Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0009861

Physical Location & Seq

Genomic Coordinates Reverse (-)

62583582 .. 62587746

Gene Structure 4165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG454400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2157 bp

ATGGGGTGCGCGCAATCGAGAATCGACAATGAGGAATCGGTGTCGAGATGCAAGGAGCGGAGGAACCTGATGAGAGAAGCGGTGGTGGCCAGAAACGCCTTCGCGGCCGGCCATTCCGGCTACGTCATGGCCTTGAAGAACACCGGCGCCGCCTTAAGCGATTACGGCCACGGAGAATCACAGCAGACACAAGAAGAGCTACTCCTCCATCACGACCAGCGGCCACTCGACCCCACCTCAACCGAGCCACCGCCTCCTCCTCCTCCGCCGCTCGAACACCTCCCTCCGCCGCCGCCGCCTCTGCCGACTTTCACTCCCAGCCCGCCGATCAAGCGCGCCACCAGCCTGCCGACGGAGGTCAGGAAAACGAGGATGCAGGGGGCTAGGTTGCCCATTGCTGAGGAGGACGAGGACGAGGAAGAAGAGGACCATGAGGAAGAAAAAGGGTTTCGCCGGAGATCGAGAAAGGAAATGGGCGCCGCGGCGGCGACGGGGTCCTCATCGCCGCAGACGCCGGAGATGAAGGCGGTGCCGCCGCCGTTGCCGGAGTCCAAGGGTGCGGCTTGGGACTATTTCTTCATGGTGGATAACATGCCGGGGCACAGCTTGAGTGAGAATGAAGGTGAAGAGTTTGGTGAAGATGAGAATGTGAATGATTTGGGTGATGGGGATGGGGATGGGGATGGGGATGAGCCCAAGACCCCGGAGAAAGCGGAGGAGATTCAGGTGAAGCCGGAGGAGATTCCGGTGTCTCCAGTGACTCCGGCGACAATTGAGCATTCGAAGACAGCCCCACCGGATTTTCAGAGGATGGTGATGCCCGGTTTTACTTTGATGGAAATATTGAATCAGATTGATGATCATTTCTTAAAGGCCTCGGAGAGTGCTCAGGAGGTTTCCAAGATGCTTGAGGCCACTCGATTGCATTATCACTCGAATTTTGCTGATAATCGAGGACACATTGATCATTCTGCACGAGTCATGCGTGTTATTACTTGGAATAAATCCTTCAGAGGCTTATCAAATGGTGATGGAGCAAAGGAGGAAGATTCAGATGATTATGAAACTCATGCCACTGTTTTGGATAAGTTGTTAGCATGGGAGAAGAAACTTTATGATGAAGTGAAGCAAGGGGAGCTTATGAAGGTTGAGTATCAGAGAAAGGTTGCTCTACTAAACAAGCAGAAAAAACGCAATGCTAGTGCTGAAACCTTGGAAAAAACGAAAGCAGCAGTAAGTCACTTGCATACAAGATATATTGTTGACATGCAGTCCATGGACTCTACAGTTTCAGAAGTGAATCAGATACGGGATGAGCAGCTGTACCCTAAACTTGTTTCTCTAGCTGACGCGATGGGAAAAATGTGGGAAAATATGTGTGCGCATCATGACAGCCAGCTGAAGATTGTTATGGACCTGAAAGCCCTTGACATTGCCCATACTCCGATGGAAACGACCAGGCACCACCATGAACGCACTGAACAGCTATTTAACGTTGTCCAACATTGGCATTCTGAATTTGAAAAGCTTGTGATTCATCAGAAACAATACATCCAAGCATTGAATAGCTGGTTGAAGTTGAATCTGATTCCTATTGAAAGCAGCTTAAAAGAGAAAATCTCTTCCCCTCCAAGAGTTCAGCGTCCCCCAATTCAACCGCTTCTCCATGCATGGCATGATTTTCTTGAAAAGCTTCCTGATGAACTTGCAAAATCTGCAACATCATCCTTTGCGGCTGTGATAAAGACTATATTACTTCATCAGGAGGAAGAGATGAAGCTAAAGGAGCAATATGAGAATACAAGGAAGGACCACATGCGTAAAAATCAGGCATTTCAAGACTGGTACCAGAAGTATATGCAGCGTAAGGGGCCTGGTGAAGCAGATCAGGAGAAAAGTGAAGATGCGAACCACAAGGATCCTATTGCAGAGAGGCAATTTGCAGTTGAGAGCTTGAAGAAGAAAATGGAAGAGGAAGCTGAAGCTCACCAGAGACATTGTATCCAGGTCAGAGAGAAGTCACTCGGGAGTCTCAAAACTCGCTTGCCTGAGCTCTTCCGCGCAATGTCAGACTATGCTCACACATGTGCTGATGCTTACGGAAAACTTAGGTCCATCACAATGCCACAAGCTTCAAATGGTAACTCTCATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF630 DUF632

Protein Analysis

718

Amino Acids

81.59

Weight (kDa)

5.64

Isoelectric Point (pI)

50.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF630	PF04783	1 - 59	9.7e-23	Protein of unknown function (DUF630)
DUF632	PF04782	278 - 582	1.4e-103	Protein of unknown function (DUF632)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25590
fragaria_vesca	FvH4_2g36270
malus_domestica	MD08G1120200.v1.1 MD15G1099400.v1.1
prunus_persica	Prupe.1G454100_v2.0.a1
pyrus_communis	pycom15g09140
rosa_chinensis	RchiOBHm_Chr6g0305621
rosa_laevigata	RLG00000010872 RLG00000018217
rosa_multiflora	Rmu_co8402805.1_g000001 Rmu_co8491339.1_g000001 Rmu_sc0001809.1_g000015
rosa_roxburghii	Rroxscaffold_7G00162520
rosa_rugosa	Rorug06G0342200
rosa_samantha	Rh2AG452300 Rh4BG182200 Rh6AG454100 Rh6BG447400 Rh6CG467800 Rh6DG454400
rosa_wichuraiana	Rw6G039590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1383
Acc65I	GGTACC	1 cut(s)	1845
AccB1I	GGYRCC	5 cut(s)	146, 476, 529, 1461, 1845
AccBSI	CCGCTC	2 cut(s)	58, 271
AccII	CGCG	6 cut(s)	11, 104, 336, 482, 1352, 2061
AclI	AACGTT	1 cut(s)	1494
AclWI	GGATC	2 cut(s)	1913, 1926
AcoI	YGGCCR	5 cut(s)	87, 105, 109, 166, 221
AcsI	RAATTY	2 cut(s)	937, 1517
AcuI	CTGAAG	3 cut(s)	994, 1421, 2001
AcyI	GRCGYC	3 cut(s)	147, 477, 512
AfaI	GTAC	2 cut(s)	1325, 1847
AfiI	CCNNNNNNNGG	1 cut(s)	352
AflII	CTTAAG	1 cut(s)	154
AflIII	ACRYGT	1 cut(s)	2084
AhdI	GACNNNNNGTC	1 cut(s)	1270
AjnI	CCWGG	3 cut(s)	1457, 1873, 2004
AleI	CACNNNNGTG	1 cut(s)	2085
Alw21I	GWGCWC	2 cut(s)	889, 2055
Alw26I	GTCTC	3 cut(s)	756, 1987, 2036
AlwI	GGATC	2 cut(s)	1913, 1926
Ama87I	CYCGRG	1 cut(s)	2024
AoxI	GGCC	9 cut(s)	87, 105, 109, 129, 166, 221, 873, 912, 1871
ApeKI	GCWGC	4 cut(s)	1229, 1318, 1602, 1861
ApoI	RAATTY	2 cut(s)	937, 1517
Asp700I	GAANNNNTTC	1 cut(s)	1692
Asp718I	GGTACC	1 cut(s)	1845
AspLEI	GCGC	8 cut(s)	11, 13, 149, 336, 338, 479, 1384, 2063
AspS9I	GGNCC	6 cut(s)	427, 495, 1414, 1810, 1871, 2112
AsuC2I	CCSGG	3 cut(s)	597, 704, 822
AsuHPI	GGTGA	8 cut(s)	635, 647, 674, 739, 826, 1040, 1889, 1979
AsuII	TTCGAA	1 cut(s)	782
AvaI	CYCGRG	1 cut(s)	2024
AvaII	GGWCC	5 cut(s)	427, 495, 1414, 1810, 2112
BaeGI	GKGCMC	1 cut(s)	603
BalI	TGGCCA	1 cut(s)	89
BamHI	GGATCC	1 cut(s)	1918
BanI	GGYRCC	5 cut(s)	146, 476, 529, 1461, 1845
BanII	GRGCYC	2 cut(s)	696, 2055
BauI	CACGAG	1 cut(s)	975
BbsI	GAAGAC	1 cut(s)	791
Bbv12I	GWGCWC	2 cut(s)	889, 2055
BbvCI	CCTCAGC	1 cut(s)	399
BbvI	GCAGC	4 cut(s)	1241, 1330, 1614, 1873
BceAI	ACGGC	2 cut(s)	181, 523
BciT130I	CCWGG	3 cut(s)	1459, 1875, 2006
BciVI	GTATCC	1 cut(s)	2012
BclI	TGATCA	2 cut(s)	859, 964
BcnI	CCSGG	3 cut(s)	597, 704, 822
BcoDI	GTCTC	3 cut(s)	756, 1987, 2036
BfaI	CTAG	3 cut(s)	384, 1200, 1343
BfmI	CTRYAG	1 cut(s)	1284
BfoI	RGCGCY	2 cut(s)	150, 480
BfrI	CTTAAG	1 cut(s)	154
BfuI	GTATCC	1 cut(s)	2012
BglI	GCCNNNNNGGC	3 cut(s)	104, 117, 485
Bme1390I	CCNGG	6 cut(s)	597, 704, 822, 1459, 1875, 2006
Bme18I	GGWCC	5 cut(s)	427, 495, 1414, 1810, 2112
BmeRI	GACNNNNNGTC	1 cut(s)	1270
BmeT110I	CYCGRG	1 cut(s)	2024
BmgT120I	GGNCC	6 cut(s)	427, 495, 1414, 1810, 1871, 2112
BmiI	GGNNCC	9 cut(s)	65, 148, 478, 496, 531, 1463, 1847, 1872, 1920
BmrFI	CCNGG	6 cut(s)	597, 704, 822, 1459, 1875, 2006
BmsI	GCATC	7 cut(s)	38, 363, 807, 894, 1393, 1894, 2083
BoxI	GACNNNNGTC	1 cut(s)	356
BpiI	GAAGAC	1 cut(s)	791
BplI	GAGNNNNNCTC	2 cut(s)	1604, 1636
BpmI	CTGGAG	1 cut(s)	738
Bpu10I	CCTNAGC	3 cut(s)	399, 888, 2049
Bpu14I	TTCGAA	1 cut(s)	782
BpuEI	CTTGAG	2 cut(s)	628, 929
BpuMI	CCSGG	3 cut(s)	597, 704, 822
BsaHI	GRCGYC	3 cut(s)	147, 477, 512
BsaJI	CCNNGG	8 cut(s)	169, 480, 552, 596, 702, 876, 1212, 1275
BsaWI	WCCGGW	2 cut(s)	745, 796
BsaXI	ACNNNNNCTCC	4 cut(s)	298, 328, 1647, 1677
Bsc4I	CCNNNNNNNGG	1 cut(s)	352
Bse118I	RCCGGY	2 cut(s)	107, 143
Bse1I	ACTGG	2 cut(s)	755, 1847
Bse3DI	GCAATG	4 cut(s)	393, 1201, 1431, 2070
BseBI	CCWGG	3 cut(s)	1459, 1875, 2006
BseDI	CCNNGG	8 cut(s)	169, 480, 552, 596, 702, 876, 1212, 1275
BseGI	GGATG	9 cut(s)	378, 676, 682, 688, 694, 816, 1318, 1551, 1724
BseLI	CCNNNNNNNGG	1 cut(s)	352
BseMI	GCAATG	4 cut(s)	393, 1201, 1431, 2070
BseMII	CTCAG	3 cut(s)	390, 902, 2040
BseNI	ACTGG	2 cut(s)	755, 1847
BsePI	GCGCGC	2 cut(s)	9, 334
BseRI	GAGGAG	7 cut(s)	194, 246, 249, 252, 416, 731, 752
BseSI	GKGCMC	1 cut(s)	603
BseX3I	CGGCCG	1 cut(s)	105
BseXI	GCAGC	4 cut(s)	1241, 1330, 1614, 1873
BseYI	CCCAGC	1 cut(s)	317
BsgI	GTGCAG	1 cut(s)	957
Bsh1236I	CGCG	6 cut(s)	11, 104, 336, 482, 1352, 2061
Bsh1285I	CGRYCG	1 cut(s)	108
BshFI	GGCC	9 cut(s)	89, 107, 111, 131, 168, 223, 875, 914, 1873
BshNI	GGYRCC	5 cut(s)	146, 476, 529, 1461, 1845
BsiEI	CGRYCG	1 cut(s)	108
BsiHKAI	GWGCWC	2 cut(s)	889, 2055
BsiHKCI	CYCGRG	1 cut(s)	2024
BslFI	GGGAC	2 cut(s)	581, 1629
BslI	CCNNNNNNNGG	1 cut(s)	352
BsmAI	GTCTC	3 cut(s)	756, 1987, 2036
BsmFI	GGGAC	2 cut(s)	581, 1629
BsmI	GAATGC	2 cut(s)	778, 1510
BsnI	GGCC	9 cut(s)	89, 107, 111, 131, 168, 223, 875, 914, 1873
BsoBI	CYCGRG	1 cut(s)	2024
Bsp119I	TTCGAA	1 cut(s)	782
Bsp1286I	GDGCHC	4 cut(s)	603, 696, 889, 2055
Bsp143I	GATC	6 cut(s)	327, 458, 859, 964, 1885, 1918
Bsp19I	CCATGG	1 cut(s)	1275
BspANI	GGCC	9 cut(s)	89, 107, 111, 131, 168, 223, 875, 914, 1873
BspCNI	CTCAG	3 cut(s)	391, 901, 2041
BspFNI	CGCG	6 cut(s)	11, 104, 336, 482, 1352, 2061
BspHI	TCATGA	1 cut(s)	1387
BspLI	GGNNCC	9 cut(s)	65, 148, 478, 496, 531, 1463, 1847, 1872, 1920
BspPI	GGATC	2 cut(s)	1913, 1926
BspQI	GCTCTTC	2 cut(s)	189, 2060
BspT104I	TTCGAA	1 cut(s)	782
BspT107I	GGYRCC	5 cut(s)	146, 476, 529, 1461, 1845
BspTI	CTTAAG	1 cut(s)	154
BsrBI	CCGCTC	2 cut(s)	58, 271
BsrDI	GCAATG	4 cut(s)	393, 1201, 1431, 2070
BsrFI	RCCGGY	2 cut(s)	107, 143
BsrI	ACTGG	2 cut(s)	755, 1847
BssAI	RCCGGY	2 cut(s)	107, 143
BssECI	CCNNGG	8 cut(s)	169, 480, 552, 596, 702, 876, 1212, 1275
BssHII	GCGCGC	2 cut(s)	9, 334
BssMI	GATC	6 cut(s)	327, 458, 859, 964, 1885, 1918
BssNI	GRCGYC	3 cut(s)	147, 477, 512
BssSI	CACGAG	1 cut(s)	975
BssT1I	CCWWGG	3 cut(s)	552, 1212, 1275
Bst2BI	CACGAG	1 cut(s)	975
Bst2UI	CCWGG	3 cut(s)	1459, 1875, 2006
Bst4CI	ACNGT	2 cut(s)	1078, 1288
Bst6I	CTCTTC	7 cut(s)	189, 417, 621, 1627, 1764, 1965, 2060
BstACI	GRCGYC	3 cut(s)	147, 477, 512
BstAFI	CTTAAG	1 cut(s)	154
BstAPI	GCANNNNNTGC	1 cut(s)	1715
BstBI	TTCGAA	1 cut(s)	782
BstC8I	GCNNGC	7 cut(s)	11, 109, 323, 336, 347, 1397, 2045
BstDEI	CTNAG	4 cut(s)	399, 888, 2049, 2108
BstDSI	CCRYGG	3 cut(s)	169, 480, 1275
BstF5I	GGATG	9 cut(s)	378, 676, 682, 688, 694, 816, 1318, 1551, 1724
BstFNI	CGCG	6 cut(s)	11, 104, 336, 482, 1352, 2061
BstH2I	RGCGCY	2 cut(s)	150, 480
BstHHI	GCGC	8 cut(s)	11, 13, 149, 336, 338, 479, 1384, 2063
BstKTI	GATC	6 cut(s)	330, 461, 862, 967, 1888, 1921
BstMAI	GTCTC	3 cut(s)	756, 1987, 2036
BstMBI	GATC	6 cut(s)	327, 458, 859, 964, 1885, 1918
BstMCI	CGRYCG	1 cut(s)	108
BstNI	CCWGG	3 cut(s)	1459, 1875, 2006
BstNSI	RCATGY	4 cut(s)	595, 1270, 1819, 2088
BstPAI	GACNNNNGTC	1 cut(s)	356
BstSCI	CCNGG	6 cut(s)	595, 702, 820, 1457, 1873, 2004
BstSFI	CTRYAG	1 cut(s)	1284
BstSLI	GKGCMC	1 cut(s)	603
BstUI	CGCG	6 cut(s)	11, 104, 336, 482, 1352, 2061
BstV1I	GCAGC	4 cut(s)	1241, 1330, 1614, 1873
BstV2I	GAAGAC	1 cut(s)	791
BstX2I	RGATCY	1 cut(s)	1918
BstXI	CCANNNNNNTGG	1 cut(s)	1081
BstYI	RGATCY	1 cut(s)	1918
BstZI	CGGCCG	1 cut(s)	105
BsuI	GTATCC	1 cut(s)	2012
BsuRI	GGCC	9 cut(s)	89, 107, 111, 131, 168, 223, 875, 914, 1873
BtgI	CCRYGG	3 cut(s)	169, 480, 1275
BtgZI	GCGATG	2 cut(s)	486, 1367
BtsCI	GGATG	9 cut(s)	378, 676, 682, 688, 694, 816, 1318, 1551, 1724
BtsIMutI	CAGTG	3 cut(s)	762, 1074, 1476
Cac8I	GCNNGC	7 cut(s)	11, 109, 323, 336, 347, 1397, 2045
CciI	TCATGA	1 cut(s)	1387
CfoI	GCGC	8 cut(s)	11, 13, 149, 336, 338, 479, 1384, 2063
Cfr10I	RCCGGY	2 cut(s)	107, 143
Cfr13I	GGNCC	6 cut(s)	427, 495, 1414, 1810, 1871, 2112
Cfr42I	CCGCGG	1 cut(s)	483
CseI	GACGC	3 cut(s)	520, 1358, 1631
Csp6I	GTAC	2 cut(s)	1324, 1846
CviQI	GTAC	2 cut(s)	1324, 1846
DdeI	CTNAG	4 cut(s)	399, 888, 2049, 2108
DinI	GGCGCC	2 cut(s)	148, 478
DpnI	GATC	6 cut(s)	329, 460, 861, 966, 1887, 1920
DpnII	GATC	6 cut(s)	327, 458, 859, 964, 1885, 1918
DriI	GACNNNNNGTC	1 cut(s)	1270
EaeI	YGGCCR	5 cut(s)	87, 105, 109, 166, 221
EagI	CGGCCG	1 cut(s)	105
Eam1104I	CTCTTC	7 cut(s)	189, 417, 621, 1627, 1764, 1965, 2060
Eam1105I	GACNNNNNGTC	1 cut(s)	1270
EarI	CTCTTC	7 cut(s)	189, 417, 621, 1627, 1764, 1965, 2060
EciI	GGCGGA	2 cut(s)	255, 276
Ecl136II	GAGCTC	1 cut(s)	2053
EclXI	CGGCCG	1 cut(s)	105
Eco130I	CCWWGG	3 cut(s)	552, 1212, 1275
Eco147I	AGGCCT	1 cut(s)	875
Eco24I	GRGCYC	2 cut(s)	696, 2055
Eco47I	GGWCC	5 cut(s)	427, 495, 1414, 1810, 2112
Eco52I	CGGCCG	1 cut(s)	105
Eco53kI	GAGCTC	1 cut(s)	2053
Eco57I	CTGAAG	3 cut(s)	994, 1421, 2001
Eco88I	CYCGRG	1 cut(s)	2024
EcoICRI	GAGCTC	1 cut(s)	2053
EcoO109I	RGGNCCY	2 cut(s)	495, 1871
EcoRII	CCWGG	3 cut(s)	1457, 1873, 2004
EcoT14I	CCWWGG	3 cut(s)	552, 1212, 1275
EcoT22I	ATGCAT	1 cut(s)	1672
EcoT38I	GRGCYC	2 cut(s)	696, 2055
EgeI	GGCGCC	2 cut(s)	148, 478
EheI	GGCGCC	2 cut(s)	148, 478
ErhI	CCWWGG	3 cut(s)	552, 1212, 1275
FalI	AAGNNNNNCTT	2 cut(s)	1122, 1154
FaqI	GGGAC	2 cut(s)	581, 1629
FauI	CCCGC	1 cut(s)	330
FbaI	TGATCA	2 cut(s)	859, 964
FokI	GGATG	9 cut(s)	385, 683, 689, 695, 701, 823, 1325, 1538, 1711
FriOI	GRGCYC	2 cut(s)	696, 2055
FseI	GGCCGGCC	1 cut(s)	111
FspAI	RTGCGCAY	1 cut(s)	1383
FspBI	CTAG	3 cut(s)	384, 1200, 1343
FspI	TGCGCA	1 cut(s)	1383
GlaI	GCGC	8 cut(s)	10, 12, 148, 335, 337, 478, 1383, 2062
GsaI	CCCAGC	1 cut(s)	321
GsuI	CTGGAG	1 cut(s)	738
HaeII	RGCGCY	2 cut(s)	150, 480
HaeIII	GGCC	9 cut(s)	89, 107, 111, 131, 168, 223, 875, 914, 1873
HgaI	GACGC	3 cut(s)	520, 1358, 1631
HhaI	GCGC	8 cut(s)	11, 13, 149, 336, 338, 479, 1384, 2063
Hin1I	GRCGYC	3 cut(s)	147, 477, 512
Hin6I	GCGC	8 cut(s)	9, 11, 147, 334, 336, 477, 1382, 2061
HinP1I	GCGC	8 cut(s)	9, 11, 147, 334, 336, 477, 1382, 2061
HincII	GTYRAC	1 cut(s)	1264
HindII	GTYRAC	1 cut(s)	1264
HindIII	AAGCTT	3 cut(s)	1526, 1691, 2130
HphI	GGTGA	8 cut(s)	635, 647, 674, 739, 826, 1040, 1889, 1979
Hpy166II	GTNNAC	1 cut(s)	1264
Hpy8I	GTNNAC	1 cut(s)	1264
Hpy99I	CGWCG	2 cut(s)	355, 493
HpyAV	CCTTC	6 cut(s)	109, 517, 614, 1018, 1138, 1801
HpyCH4III	ACNGT	2 cut(s)	1078, 1288
HpyCH4IV	ACGT	2 cut(s)	123, 1494
HpyF3I	CTNAG	4 cut(s)	399, 888, 2049, 2108
HpySE526I	ACGT	2 cut(s)	123, 1494
Hsp92I	GRCGYC	3 cut(s)	147, 477, 512
HspAI	GCGC	8 cut(s)	9, 11, 147, 334, 336, 477, 1382, 2061
KasI	GGCGCC	2 cut(s)	146, 476
KpnI	GGTACC	1 cut(s)	1849
KroI	GCCGGC	1 cut(s)	107
KroNI	GCCGGC	1 cut(s)	109
Ksp22I	TGATCA	2 cut(s)	859, 964
KspI	CCGCGG	1 cut(s)	483
Kzo9I	GATC	6 cut(s)	327, 458, 859, 964, 1885, 1918
LguI	GCTCTTC	2 cut(s)	189, 2060
LmnI	GCTCC	4 cut(s)	55, 1034, 1135, 1786
Lsp1109I	GCAGC	4 cut(s)	1241, 1330, 1614, 1873
LweI	GCATC	7 cut(s)	38, 363, 807, 894, 1393, 1894, 2083
MaeI	CTAG	3 cut(s)	384, 1200, 1343
MaeII	ACGT	2 cut(s)	123, 1494
MaeIII	GTNAC	4 cut(s)	757, 1238, 2019, 2141
MalI	GATC	6 cut(s)	329, 460, 861, 966, 1887, 1920
MbiI	CCGCTC	2 cut(s)	58, 271
MboI	GATC	6 cut(s)	327, 458, 859, 964, 1885, 1918
MfeI	CAATTG	1 cut(s)	771
MflI	RGATCY	1 cut(s)	1918
MhlI	GDGCHC	4 cut(s)	603, 696, 889, 2055
MlsI	TGGCCA	1 cut(s)	89
MluCI	AATT	5 cut(s)	771, 937, 1517, 1650, 1937
MluNI	TGGCCA	1 cut(s)	89
Mly113I	GGCGCC	2 cut(s)	147, 477
MlyI	GAGTC	5 cut(s)	557, 754, 987, 1274, 2038
MmeI	TCCRAC	1 cut(s)	1525
Mox20I	TGGCCA	1 cut(s)	89
Mph1103I	ATGCAT	1 cut(s)	1672
MroNI	GCCGGC	1 cut(s)	107
MroXI	GAANNNNTTC	1 cut(s)	1692
MscI	TGGCCA	1 cut(s)	89
MseI	TTAA	4 cut(s)	155, 869, 1491, 1607
MslI	CAYNNNNRTG	3 cut(s)	1467, 2085, 2120
Msp20I	TGGCCA	1 cut(s)	89
MspA1I	CMGCKG	4 cut(s)	220, 482, 1321, 1399
MspCI	CTTAAG	1 cut(s)	154
MspR9I	CCNGG	6 cut(s)	597, 704, 822, 1459, 1875, 2006
MunI	CAATTG	1 cut(s)	771
Mva1269I	GAATGC	2 cut(s)	778, 1510
MvaI	CCWGG	3 cut(s)	1459, 1875, 2006
MvnI	CGCG	6 cut(s)	11, 104, 336, 482, 1352, 2061
NaeI	GCCGGC	1 cut(s)	109
NarI	GGCGCC	2 cut(s)	147, 477
NciI	CCSGG	3 cut(s)	597, 704, 822
NcoI	CCATGG	1 cut(s)	1275
NdeII	GATC	6 cut(s)	327, 458, 859, 964, 1885, 1918
NgoMIV	GCCGGC	1 cut(s)	107
NlaIV	GGNNCC	9 cut(s)	65, 148, 478, 496, 531, 1463, 1847, 1872, 1920
NmuCI	GTSAC	3 cut(s)	757, 1238, 2019
NsbI	TGCGCA	1 cut(s)	1383
NsiI	ATGCAT	1 cut(s)	1672
NspI	RCATGY	4 cut(s)	595, 1270, 1819, 2088
NspV	TTCGAA	1 cut(s)	782
OliI	CACNNNNGTG	1 cut(s)	2085
PagI	TCATGA	1 cut(s)	1387
PauI	GCGCGC	2 cut(s)	9, 334
PceI	AGGCCT	1 cut(s)	875
PciI	ACATGT	1 cut(s)	2084
PciSI	GCTCTTC	2 cut(s)	189, 2060
PcsI	WCGNNNNNNNCGW	1 cut(s)	982
PctI	GAATGC	2 cut(s)	778, 1510
PdiI	GCCGGC	1 cut(s)	109
PdmI	GAANNNNTTC	1 cut(s)	1692
PflFI	GACNNNGTC	1 cut(s)	493
PleI	GAGTC	5 cut(s)	556, 754, 986, 1274, 2037
PluTI	GGCGCC	2 cut(s)	150, 480
PpsI	GAGTC	5 cut(s)	556, 754, 986, 1274, 2037
PpuMI	RGGWCCY	1 cut(s)	495
PscI	ACATGT	1 cut(s)	2084
PshAI	GACNNNNGTC	1 cut(s)	356
Psp124BI	GAGCTC	1 cut(s)	2055
Psp1406I	AACGTT	1 cut(s)	1494
Psp5II	RGGWCCY	1 cut(s)	495
Psp6I	CCWGG	3 cut(s)	1457, 1873, 2004
PspFI	CCCAGC	1 cut(s)	317
PspGI	CCWGG	3 cut(s)	1457, 1873, 2004
PspN4I	GGNNCC	9 cut(s)	65, 148, 478, 496, 531, 1463, 1847, 1872, 1920
PspPI	GGNCC	6 cut(s)	427, 495, 1414, 1810, 1871, 2112
PspPPI	RGGWCCY	1 cut(s)	495
PsuI	RGATCY	1 cut(s)	1918
PsyI	GACNNNGTC	1 cut(s)	493
PteI	GCGCGC	2 cut(s)	9, 334
PvuII	CAGCTG	2 cut(s)	1321, 1399
RigI	GGCCGGCC	1 cut(s)	111
RsaI	GTAC	2 cut(s)	1325, 1847
RsaNI	GTAC	2 cut(s)	1324, 1846
RseI	CAYNNNNRTG	3 cut(s)	1467, 2085, 2120
SacI	GAGCTC	1 cut(s)	2055
SacII	CCGCGG	1 cut(s)	483
SapI	GCTCTTC	2 cut(s)	189, 2060
SaqAI	TTAA	4 cut(s)	155, 869, 1491, 1607
Sau3AI	GATC	6 cut(s)	327, 458, 859, 964, 1885, 1918
Sau96I	GGNCC	6 cut(s)	427, 495, 1414, 1810, 1871, 2112
SchI	GAGTC	5 cut(s)	557, 754, 987, 1274, 2038
ScrFI	CCNGG	6 cut(s)	597, 704, 822, 1459, 1875, 2006
SduI	GDGCHC	4 cut(s)	603, 696, 889, 2055
SfaNI	GCATC	7 cut(s)	38, 363, 807, 894, 1393, 1894, 2083
SfcI	CTRYAG	1 cut(s)	1284
SfoI	GGCGCC	2 cut(s)	148, 478
Sfr303I	CCGCGG	1 cut(s)	483
SfuI	TTCGAA	1 cut(s)	782
SgrAI	CRCCGGYG	1 cut(s)	143
SgrBI	CCGCGG	1 cut(s)	483
SinI	GGWCC	5 cut(s)	427, 495, 1414, 1810, 2112
SmiMI	CAYNNNNRTG	3 cut(s)	1467, 2085, 2120
SmlI	CTYRAG	3 cut(s)	154, 607, 908
SmoI	CTYRAG	3 cut(s)	154, 607, 908
Sse9I	AATT	5 cut(s)	771, 937, 1517, 1650, 1937
SseBI	AGGCCT	1 cut(s)	875
SspDI	GGCGCC	2 cut(s)	146, 476
SspI	AATATT	1 cut(s)	843
SspMI	CTAG	3 cut(s)	384, 1200, 1343
SstI	GAGCTC	1 cut(s)	2055
StuI	AGGCCT	1 cut(s)	875
StyD4I	CCNGG	6 cut(s)	595, 702, 820, 1457, 1873, 2004
StyI	CCWWGG	3 cut(s)	552, 1212, 1275
TaaI	ACNGT	2 cut(s)	1078, 1288
TaiI	ACGT	2 cut(s)	126, 1497
TasI	AATT	5 cut(s)	771, 937, 1517, 1650, 1937
Tru1I	TTAA	4 cut(s)	155, 869, 1491, 1607
Tru9I	TTAA	4 cut(s)	155, 869, 1491, 1607
TscAI	CASTG	3 cut(s)	762, 1081, 1483
TseFI	GTSAC	3 cut(s)	757, 1238, 2019
TseI	GCWGC	4 cut(s)	1229, 1318, 1602, 1861
Tsp45I	GTSAC	3 cut(s)	757, 1238, 2019
TspGWI	ACGGA	3 cut(s)	186, 368, 2115
TspRI	CASTG	3 cut(s)	762, 1081, 1483
Tth111I	GACNNNGTC	1 cut(s)	493
Vha464I	CTTAAG	1 cut(s)	154
VpaK11BI	GGWCC	5 cut(s)	427, 495, 1414, 1810, 2112
XapI	RAATTY	2 cut(s)	937, 1517
XceI	RCATGY	4 cut(s)	595, 1270, 1819, 2088
XmnI	GAANNNNTTC	1 cut(s)	1692
XspI	CTAG	3 cut(s)	384, 1200, 1343
Zsp2I	ATGCAT	1 cut(s)	1672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.