Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0009861

Physical Location & Seq

Genomic Coordinates Forward (+)

32080870 .. 32089776

Gene Structure 8907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG182200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGTGAATAATGAAGAAGCCTCTTCTTCTTCTTTCATCCTTCCATGGACATATCATGTCTTTTTGAGTTCTGAGGTGAGGATACACAATAATTTCACAGGTCAAATATGCAGCGCTTTGCGGCAGAAGGGGATCATCACCGTCATGGATTATCAGCGACCACTGGACTCCACCGCCACTGAGCAACTGGCTCCTCCTCCGCCGCTCGAACACCTCCCTCTGCCTTTGCCGACCTTCACTCCCAGCCCGCCGATCAAGCGCGCCACCAGCCTGCCTACGATGCCGACGAAGTGCCGCGGCGAACTCCATGGTGATGTCGCGGTCGGGGGAGGAGGAGGTGTGGGCTGCAAGGTCTTCTTGGTTCTCACCGCCGCTGCTGGTGTTGCCACCTGGATCCGCAGTGCCGCGGCGAACTCCATGGTGATGTCGCGGTCGGGGGAGGAGGAGAATGTGATCGTGTACGTCATACTTCCATTCCATTGGTGGCCTGCAGAGCGTAATTCTTGGCTACGCCGGGCGCAAGTTACGCCCCATACGTCTGTTAACGGAGGGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

185

Amino Acids

20.1

Weight (kDa)

7.81

Isoelectric Point (pI)

58.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25590
fragaria_vesca	FvH4_2g36270
malus_domestica	MD08G1120200.v1.1 MD15G1099400.v1.1
prunus_persica	Prupe.1G454100_v2.0.a1
pyrus_communis	pycom15g09140
rosa_chinensis	RchiOBHm_Chr6g0305621
rosa_laevigata	RLG00000010872 RLG00000018217
rosa_multiflora	Rmu_co8402805.1_g000001 Rmu_co8491339.1_g000001 Rmu_sc0001809.1_g000015
rosa_roxburghii	Rroxscaffold_7G00162520
rosa_rugosa	Rorug06G0342200
rosa_samantha	Rh2AG452300 Rh4BG182200 Rh6AG454100 Rh6BG447400 Rh6CG467800 Rh6DG454400
rosa_wichuraiana	Rw6G039590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	205
AccII	CGCG	5 cut(s)	261, 297, 320, 407, 430
AclWI	GGATC	3 cut(s)	140, 388, 401
AfaI	GTAC	1 cut(s)	461
AfeI	AGCGCT	1 cut(s)	115
AjnI	CCWGG	1 cut(s)	389
AlwI	GGATC	3 cut(s)	140, 388, 401
Aor51HI	AGCGCT	1 cut(s)	115
AoxI	GGCC	1 cut(s)	485
ApeKI	GCWGC	3 cut(s)	111, 345, 374
AspLEI	GCGC	4 cut(s)	116, 261, 263, 520
AsuC2I	CCSGG	1 cut(s)	515
AsuHPI	GGTGA	6 cut(s)	16, 88, 130, 323, 358, 433
BamHI	GGATCC	1 cut(s)	393
BbsI	GAAGAC	1 cut(s)	346
BbvI	GCAGC	3 cut(s)	123, 332, 361
BciT130I	CCWGG	1 cut(s)	391
BciVI	GTATCC	1 cut(s)	75
BcnI	CCSGG	1 cut(s)	515
BfmI	CTRYAG	1 cut(s)	489
BfoI	RGCGCY	1 cut(s)	117
BfuI	GTATCC	1 cut(s)	75
Bme1390I	CCNGG	2 cut(s)	391, 515
BmiI	GGNNCC	2 cut(s)	192, 395
BmrFI	CCNGG	2 cut(s)	391, 515
BmsI	GCATC	1 cut(s)	270
BpiI	GAAGAC	1 cut(s)	346
BpuMI	CCSGG	1 cut(s)	515
BsaJI	CCNNGG	5 cut(s)	44, 295, 307, 405, 417
BsaXI	ACNNNNNCTCC	4 cut(s)	223, 253, 324, 354
Bse1I	ACTGG	2 cut(s)	168, 192
BseBI	CCWGG	1 cut(s)	391
BseDI	CCNNGG	5 cut(s)	44, 295, 307, 405, 417
BseGI	GGATG	1 cut(s)	36
BseMII	CTCAG	2 cut(s)	63, 171
BseNI	ACTGG	2 cut(s)	168, 192
BsePI	GCGCGC	1 cut(s)	259
BseRI	GAGGAG	6 cut(s)	183, 186, 345, 348, 455, 458
BseXI	GCAGC	3 cut(s)	123, 332, 361
BseYI	CCCAGC	1 cut(s)	242
Bsh1236I	CGCG	5 cut(s)	261, 297, 320, 407, 430
Bsh1285I	CGRYCG	2 cut(s)	324, 434
BshFI	GGCC	1 cut(s)	487
BsiEI	CGRYCG	2 cut(s)	324, 434
BsiSI	CCGG	1 cut(s)	514
BsnI	GGCC	1 cut(s)	487
Bsp143I	GATC	4 cut(s)	132, 252, 393, 453
Bsp19I	CCATGG	3 cut(s)	44, 307, 417
BspANI	GGCC	1 cut(s)	487
BspCNI	CTCAG	2 cut(s)	64, 172
BspFNI	CGCG	5 cut(s)	261, 297, 320, 407, 430
BspLI	GGNNCC	2 cut(s)	192, 395
BspMAI	CTGCAG	1 cut(s)	493
BspPI	GGATC	3 cut(s)	140, 388, 401
BsrBI	CCGCTC	1 cut(s)	205
BsrI	ACTGG	2 cut(s)	168, 192
BssECI	CCNNGG	5 cut(s)	44, 295, 307, 405, 417
BssHII	GCGCGC	1 cut(s)	259
BssMI	GATC	4 cut(s)	132, 252, 393, 453
BssT1I	CCWWGG	3 cut(s)	44, 307, 417
Bst2UI	CCWGG	1 cut(s)	391
Bst4CI	ACNGT	1 cut(s)	142
Bst6I	CTCTTC	1 cut(s)	28
BstC8I	GCNNGC	4 cut(s)	248, 261, 272, 489
BstDEI	CTNAG	2 cut(s)	72, 180
BstDSI	CCRYGG	5 cut(s)	44, 295, 307, 405, 417
BstF5I	GGATG	1 cut(s)	36
BstFNI	CGCG	5 cut(s)	261, 297, 320, 407, 430
BstH2I	RGCGCY	1 cut(s)	117
BstHHI	GCGC	4 cut(s)	116, 261, 263, 520
BstKTI	GATC	4 cut(s)	135, 255, 396, 456
BstMBI	GATC	4 cut(s)	132, 252, 393, 453
BstMCI	CGRYCG	2 cut(s)	324, 434
BstMWI	GCNNNNNNNGC	6 cut(s)	256, 267, 280, 383, 493, 526
BstNI	CCWGG	1 cut(s)	391
BstSCI	CCNGG	2 cut(s)	389, 513
BstSFI	CTRYAG	1 cut(s)	489
BstUI	CGCG	5 cut(s)	261, 297, 320, 407, 430
BstV1I	GCAGC	3 cut(s)	123, 332, 361
BstV2I	GAAGAC	1 cut(s)	346
BstX2I	RGATCY	1 cut(s)	393
BstXI	CCANNNNNNTGG	1 cut(s)	480
BstYI	RGATCY	1 cut(s)	393
BsuI	GTATCC	1 cut(s)	75
BsuRI	GGCC	1 cut(s)	487
BtgI	CCRYGG	5 cut(s)	44, 295, 307, 405, 417
BtsCI	GGATG	1 cut(s)	36
BtsI	GCAGTG	1 cut(s)	406
BtsIMutI	CAGTG	3 cut(s)	161, 177, 406
Cac8I	GCNNGC	4 cut(s)	248, 261, 272, 489
CfoI	GCGC	4 cut(s)	116, 261, 263, 520
Cfr42I	CCGCGG	2 cut(s)	298, 408
Csp6I	GTAC	1 cut(s)	460
CviAII	CATG	5 cut(s)	45, 56, 145, 308, 418
CviJI	RGCY	7 cut(s)	20, 191, 246, 270, 345, 487, 508
CviKI_1	RGCY	7 cut(s)	20, 191, 246, 270, 345, 487, 508
CviQI	GTAC	1 cut(s)	460
DdeI	CTNAG	2 cut(s)	72, 180
DpnI	GATC	4 cut(s)	134, 254, 395, 455
DpnII	GATC	4 cut(s)	132, 252, 393, 453
Eam1104I	CTCTTC	1 cut(s)	28
EarI	CTCTTC	1 cut(s)	28
EciI	GGCGGA	1 cut(s)	189
Eco130I	CCWWGG	3 cut(s)	44, 307, 417
Eco47III	AGCGCT	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	389
EcoT14I	CCWWGG	3 cut(s)	44, 307, 417
ErhI	CCWWGG	3 cut(s)	44, 307, 417
FaeI	CATG	5 cut(s)	48, 59, 148, 311, 421
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FatI	CATG	5 cut(s)	44, 55, 144, 307, 417
FauI	CCCGC	1 cut(s)	255
FokI	GGATG	1 cut(s)	23
GlaI	GCGC	4 cut(s)	115, 260, 262, 519
GsaI	CCCAGC	1 cut(s)	246
HaeII	RGCGCY	1 cut(s)	117
HaeIII	GGCC	1 cut(s)	487
HapII	CCGG	1 cut(s)	514
HhaI	GCGC	4 cut(s)	116, 261, 263, 520
Hin1II	CATG	5 cut(s)	48, 59, 148, 311, 421
Hin6I	GCGC	4 cut(s)	114, 259, 261, 518
HinP1I	GCGC	4 cut(s)	114, 259, 261, 518
HincII	GTYRAC	1 cut(s)	544
HindII	GTYRAC	1 cut(s)	544
HinfI	GANTC	1 cut(s)	167
HpaI	GTTAAC	1 cut(s)	544
HpaII	CCGG	1 cut(s)	514
HphI	GGTGA	6 cut(s)	16, 88, 130, 323, 358, 433
Hpy166II	GTNNAC	2 cut(s)	460, 544
Hpy188I	TCNGA	1 cut(s)	73
Hpy8I	GTNNAC	2 cut(s)	460, 544
Hpy99I	CGWCG	1 cut(s)	289
HpyAV	CCTTC	3 cut(s)	50, 121, 244
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4IV	ACGT	2 cut(s)	462, 536
HpyCH4V	TGCA	3 cut(s)	111, 348, 491
HpyF10VI	GCNNNNNNNGC	6 cut(s)	256, 267, 280, 383, 493, 526
HpyF3I	CTNAG	2 cut(s)	72, 180
HpySE526I	ACGT	2 cut(s)	462, 536
Hsp92II	CATG	5 cut(s)	48, 59, 148, 311, 421
HspAI	GCGC	4 cut(s)	114, 259, 261, 518
KspAI	GTTAAC	1 cut(s)	544
KspI	CCGCGG	2 cut(s)	298, 408
Kzo9I	GATC	4 cut(s)	132, 252, 393, 453
LmnI	GCTCC	1 cut(s)	196
Lsp1109I	GCAGC	3 cut(s)	123, 332, 361
LweI	GCATC	1 cut(s)	270
MaeII	ACGT	2 cut(s)	462, 536
MaeIII	GTNAC	1 cut(s)	523
MalI	GATC	4 cut(s)	134, 254, 395, 455
MbiI	CCGCTC	1 cut(s)	205
MboI	GATC	4 cut(s)	132, 252, 393, 453
MboII	GAAGA	5 cut(s)	15, 18, 21, 26, 346
MflI	RGATCY	1 cut(s)	393
MluCI	AATT	2 cut(s)	91, 499
MlyI	GAGTC	1 cut(s)	161
MseI	TTAA	1 cut(s)	543
MslI	CAYNNNNRTG	3 cut(s)	143, 312, 422
MspA1I	CMGCKG	3 cut(s)	297, 374, 407
MspI	CCGG	1 cut(s)	514
MspR9I	CCNGG	2 cut(s)	391, 515
MvaI	CCWGG	1 cut(s)	391
MvnI	CGCG	5 cut(s)	261, 297, 320, 407, 430
MwoI	GCNNNNNNNGC	6 cut(s)	256, 267, 280, 383, 493, 526
NciI	CCSGG	1 cut(s)	515
NcoI	CCATGG	3 cut(s)	44, 307, 417
NdeII	GATC	4 cut(s)	132, 252, 393, 453
NlaIII	CATG	5 cut(s)	48, 59, 148, 311, 421
NlaIV	GGNNCC	2 cut(s)	192, 395
PauI	GCGCGC	1 cut(s)	259
PcsI	WCGNNNNNNNCGW	2 cut(s)	284, 533
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
Psp6I	CCWGG	1 cut(s)	389
PspFI	CCCAGC	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	389
PspN4I	GGNNCC	2 cut(s)	192, 395
PstI	CTGCAG	1 cut(s)	493
PsuI	RGATCY	1 cut(s)	393
PteI	GCGCGC	1 cut(s)	259
RsaI	GTAC	1 cut(s)	461
RsaNI	GTAC	1 cut(s)	460
RseI	CAYNNNNRTG	3 cut(s)	143, 312, 422
SacII	CCGCGG	2 cut(s)	298, 408
SaqAI	TTAA	1 cut(s)	543
Sau3AI	GATC	4 cut(s)	132, 252, 393, 453
SchI	GAGTC	1 cut(s)	161
ScrFI	CCNGG	2 cut(s)	391, 515
SetI	ASST	9 cut(s)	78, 103, 216, 236, 340, 354, 392, 465, 539
SfaNI	GCATC	1 cut(s)	270
SfcI	CTRYAG	1 cut(s)	489
Sfr303I	CCGCGG	2 cut(s)	298, 408
SgrBI	CCGCGG	2 cut(s)	298, 408
SmiMI	CAYNNNNRTG	3 cut(s)	143, 312, 422
Sse9I	AATT	2 cut(s)	91, 499
StyD4I	CCNGG	2 cut(s)	389, 513
StyI	CCWWGG	3 cut(s)	44, 307, 417
TaaI	ACNGT	1 cut(s)	142
TaiI	ACGT	2 cut(s)	465, 539
TaqI	TCGA	1 cut(s)	207
TasI	AATT	2 cut(s)	91, 499
TauI	GCSGC	7 cut(s)	124, 205, 297, 300, 374, 407, 410
Tru1I	TTAA	1 cut(s)	543
Tru9I	TTAA	1 cut(s)	543
TscAI	CASTG	3 cut(s)	168, 184, 406
TseI	GCWGC	3 cut(s)	111, 345, 374
TspDTI	ATGAA	2 cut(s)	25, 27
TspRI	CASTG	3 cut(s)	168, 184, 406
XcmI	CCANNNNNNNNNTGG	2 cut(s)	184, 480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.