Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0009861

Physical Location & Seq

Genomic Coordinates Forward (+)

66665066 .. 66665419

Gene Structure 354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG452300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGCCTTGAAGAAAACCGGCGCCGCCTTAAGCGATTACGGCCACGGAGAATCAAAGCAGACACAAGAAGAGCTACTCCTCCATCACGACCAGCGGCCACTGGACTCCACCGCCACTGAGCAACTGCCTCCTCCTCCTCCGCCGCTCGAACACCTCCCTCTGCCTCTGCTGACCTTCACTCCCAGCCCGCCGATCAAGCGCACCACCAGCCTACCGACGATGCCGACGAAGGTCCAGAAAACAAGGATGCAAGGGGTTAGGTTGCCCATTGCTGAAGAGGACGAATCCGCCCACGCCTCCTCCTCCCTCGACTGCGACATCACCATAAAGTTCGTCGTGGCACCGCTGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF630 DUF632

Protein Analysis

117

Amino Acids

12.77

Weight (kDa)

5.9

Isoelectric Point (pI)

60.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25590
fragaria_vesca	FvH4_2g36270
malus_domestica	MD08G1120200.v1.1 MD15G1099400.v1.1
prunus_persica	Prupe.1G454100_v2.0.a1
pyrus_communis	pycom15g09140
rosa_chinensis	RchiOBHm_Chr6g0305621
rosa_laevigata	RLG00000010872 RLG00000018217
rosa_multiflora	Rmu_co8402805.1_g000001 Rmu_co8491339.1_g000001 Rmu_sc0001809.1_g000015
rosa_roxburghii	Rroxscaffold_7G00162520
rosa_rugosa	Rorug06G0342200
rosa_samantha	Rh2AG452300 Rh4BG182200 Rh6AG454100 Rh6BG447400 Rh6CG467800 Rh6DG454400
rosa_wichuraiana	Rw6G039590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	20, 340
AccBSI	CCGCTC	1 cut(s)	145
AciI	CCGC	8 cut(s)	24, 94, 111, 140, 143, 188, 288, 344
AcoI	YGGCCR	2 cut(s)	40, 95
AcuI	CTGAAG	1 cut(s)	294
AcyI	GRCGYC	1 cut(s)	21
AflII	CTTAAG	1 cut(s)	28
AgsI	TTSAA	1 cut(s)	10
AluBI	AGCT	2 cut(s)	73, 351
AluI	AGCT	2 cut(s)	73, 351
AoxI	GGCC	3 cut(s)	3, 40, 95
AspLEI	GCGC	2 cut(s)	23, 201
AspS9I	GGNCC	1 cut(s)	232
AsuHPI	GGTGA	1 cut(s)	313
AvaII	GGWCC	1 cut(s)	232
BanI	GGYRCC	2 cut(s)	20, 340
BccI	CCATC	1 cut(s)	90
BceAI	ACGGC	1 cut(s)	55
BfaI	CTAG	1 cut(s)	352
BfoI	RGCGCY	1 cut(s)	24
BfrI	CTTAAG	1 cut(s)	28
BisI	GCNGC	3 cut(s)	24, 95, 143
BlpI	GCTNAGC	1 cut(s)	347
BlsI	GCNGC	3 cut(s)	25, 96, 144
Bme18I	GGWCC	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	2 cut(s)	22, 342
BmsI	GCATC	2 cut(s)	210, 237
BoxI	GACNNNNGTC	1 cut(s)	230
Bpu1102I	GCTNAGC	1 cut(s)	347
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	43
BsaXI	ACNNNNNCTCC	4 cut(s)	163, 193, 284, 314
Bse118I	RCCGGY	1 cut(s)	17
Bse1I	ACTGG	1 cut(s)	105
Bse3DI	GCAATG	1 cut(s)	267
BseDI	CCNNGG	1 cut(s)	43
BseGI	GGATG	1 cut(s)	252
BseMI	GCAATG	1 cut(s)	267
BseMII	CTCAG	2 cut(s)	108, 338
BseNI	ACTGG	1 cut(s)	105
BseRI	GAGGAG	6 cut(s)	68, 120, 123, 126, 289, 292
BseYI	CCCAGC	1 cut(s)	182
BshFI	GGCC	3 cut(s)	5, 42, 97
BshNI	GGYRCC	2 cut(s)	20, 340
BsiSI	CCGG	1 cut(s)	18
BsnI	GGCC	3 cut(s)	5, 42, 97
Bsp143I	GATC	1 cut(s)	192
Bsp1720I	GCTNAGC	1 cut(s)	347
BspACI	CCGC	8 cut(s)	24, 94, 111, 140, 143, 188, 288, 344
BspANI	GGCC	3 cut(s)	5, 42, 97
BspCNI	CTCAG	2 cut(s)	109, 339
BspLI	GGNNCC	2 cut(s)	22, 342
BspQI	GCTCTTC	1 cut(s)	63
BspT107I	GGYRCC	2 cut(s)	20, 340
BspTI	CTTAAG	1 cut(s)	28
BsrBI	CCGCTC	1 cut(s)	145
BsrDI	GCAATG	1 cut(s)	267
BsrFI	RCCGGY	1 cut(s)	17
BsrI	ACTGG	1 cut(s)	105
BssAI	RCCGGY	1 cut(s)	17
BssECI	CCNNGG	1 cut(s)	43
BssMI	GATC	1 cut(s)	192
BssNI	GRCGYC	1 cut(s)	21
Bst6I	CTCTTC	2 cut(s)	63, 270
BstACI	GRCGYC	1 cut(s)	21
BstAFI	CTTAAG	1 cut(s)	28
BstC8I	GCNNGC	1 cut(s)	188
BstDEI	CTNAG	2 cut(s)	117, 347
BstDSI	CCRYGG	1 cut(s)	43
BstF5I	GGATG	1 cut(s)	252
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	2 cut(s)	23, 201
BstKTI	GATC	1 cut(s)	195
BstMBI	GATC	1 cut(s)	192
BstMWI	GCNNNNNNNGC	3 cut(s)	39, 196, 207
BstPAI	GACNNNNGTC	1 cut(s)	230
BsuRI	GGCC	3 cut(s)	5, 42, 97
BtgI	CCRYGG	1 cut(s)	43
BtsCI	GGATG	1 cut(s)	252
BtsIMutI	CAGTG	2 cut(s)	98, 114
Cac8I	GCNNGC	1 cut(s)	188
CfoI	GCGC	2 cut(s)	23, 201
Cfr10I	RCCGGY	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	232
CviJI	RGCY	7 cut(s)	5, 42, 73, 97, 186, 210, 351
CviKI_1	RGCY	7 cut(s)	5, 42, 73, 97, 186, 210, 351
DdeI	CTNAG	2 cut(s)	117, 347
DinI	GGCGCC	1 cut(s)	22
DpnI	GATC	1 cut(s)	194
DpnII	GATC	1 cut(s)	192
EaeI	YGGCCR	2 cut(s)	40, 95
Eam1104I	CTCTTC	2 cut(s)	63, 270
EarI	CTCTTC	2 cut(s)	63, 270
EciI	GGCGGA	2 cut(s)	129, 277
Eco47I	GGWCC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	294
EgeI	GGCGCC	1 cut(s)	22
EheI	GGCGCC	1 cut(s)	22
FaiI	YATR	1 cut(s)	326
FauI	CCCGC	1 cut(s)	195
Fnu4HI	GCNGC	3 cut(s)	24, 95, 143
FokI	GGATG	1 cut(s)	259
Fsp4HI	GCNGC	3 cut(s)	24, 95, 143
FspBI	CTAG	1 cut(s)	352
GlaI	GCGC	2 cut(s)	22, 200
GluI	GCNGC	3 cut(s)	24, 95, 143
GsaI	CCCAGC	1 cut(s)	186
HaeII	RGCGCY	1 cut(s)	24
HaeIII	GGCC	3 cut(s)	5, 42, 97
HapII	CCGG	1 cut(s)	18
HhaI	GCGC	2 cut(s)	23, 201
Hin1I	GRCGYC	1 cut(s)	21
Hin6I	GCGC	2 cut(s)	21, 199
HinP1I	GCGC	2 cut(s)	21, 199
HinfI	GANTC	3 cut(s)	50, 104, 284
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	1 cut(s)	313
Hpy188III	TCNNGA	2 cut(s)	86, 235
Hpy99I	CGWCG	3 cut(s)	220, 229, 338
HpyAV	CCTTC	2 cut(s)	184, 223
HpyCH4V	TGCA	1 cut(s)	250
HpyF10VI	GCNNNNNNNGC	3 cut(s)	39, 196, 207
HpyF3I	CTNAG	2 cut(s)	117, 347
Hsp92I	GRCGYC	1 cut(s)	21
HspAI	GCGC	2 cut(s)	21, 199
KasI	GGCGCC	1 cut(s)	20
Kzo9I	GATC	1 cut(s)	192
LguI	GCTCTTC	1 cut(s)	63
LpnPI	CCDG	6 cut(s)	31, 86, 104, 196, 220, 248
LweI	GCATC	2 cut(s)	210, 237
MaeI	CTAG	1 cut(s)	352
MalI	GATC	1 cut(s)	194
MbiI	CCGCTC	1 cut(s)	145
MboI	GATC	1 cut(s)	192
MboII	GAAGA	3 cut(s)	22, 80, 287
Mly113I	GGCGCC	1 cut(s)	21
MlyI	GAGTC	1 cut(s)	98
MseI	TTAA	1 cut(s)	29
MspA1I	CMGCKG	2 cut(s)	94, 346
MspCI	CTTAAG	1 cut(s)	28
MspI	CCGG	1 cut(s)	18
MwoI	GCNNNNNNNGC	3 cut(s)	39, 196, 207
NarI	GGCGCC	1 cut(s)	21
NdeII	GATC	1 cut(s)	192
NlaIV	GGNNCC	2 cut(s)	22, 342
PciSI	GCTCTTC	1 cut(s)	63
PcsI	WCGNNNNNNNCGW	1 cut(s)	224
PfeI	GAWTC	2 cut(s)	50, 284
PkrI	GCNGC	3 cut(s)	25, 96, 144
PleI	GAGTC	1 cut(s)	98
PluTI	GGCGCC	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	98
PshAI	GACNNNNGTC	1 cut(s)	230
PspFI	CCCAGC	1 cut(s)	182
PspN4I	GGNNCC	2 cut(s)	22, 342
PspPI	GGNCC	1 cut(s)	232
SapI	GCTCTTC	1 cut(s)	63
SaqAI	TTAA	1 cut(s)	29
SatI	GCNGC	3 cut(s)	24, 95, 143
Sau3AI	GATC	1 cut(s)	192
Sau96I	GGNCC	1 cut(s)	232
SchI	GAGTC	1 cut(s)	98
SetI	ASST	6 cut(s)	75, 156, 176, 234, 263, 353
SfaNI	GCATC	2 cut(s)	210, 237
SfoI	GGCGCC	1 cut(s)	22
SinI	GGWCC	1 cut(s)	232
SmlI	CTYRAG	1 cut(s)	28
SmoI	CTYRAG	1 cut(s)	28
SsiI	CCGC	8 cut(s)	24, 94, 111, 140, 143, 188, 288, 344
SspDI	GGCGCC	1 cut(s)	20
SspMI	CTAG	1 cut(s)	352
TaqI	TCGA	2 cut(s)	147, 309
TauI	GCSGC	3 cut(s)	26, 97, 145
TfiI	GAWTC	2 cut(s)	50, 284
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
TscAI	CASTG	2 cut(s)	105, 121
TspGWI	ACGGA	1 cut(s)	60
TspRI	CASTG	2 cut(s)	105, 121
Vha464I	CTTAAG	1 cut(s)	28
VpaK11BI	GGWCC	1 cut(s)	232
XspI	CTAG	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.