Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001809.1

Orthogroup ID

OG0009861

Physical Location & Seq

Genomic Coordinates Reverse (-)

68158 .. 73594

Gene Structure 5437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001809.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2493 bp

atggggtgcgcgcagtcgagaatcgacaatgaggaatcggtgtcgagatgcaaggagcggaggaacctgatgagagaagcggtggtggccagaaacgccttcgcggccggtcattccggctacgtcatggccttgaagaacaccggcgccgccttaagcgattacggccacggagaatcgcagcagacacaagaagagctactcctccatcacgaccagcggccactggaccccaccgcaaccgacccacctccgcctcctcctccgccgctcgagcacctccctccgccgccgccgcctctgcctcccaccccgccgatcgagcgcgccaccagcctgccgacgatgccgacggaggtccttaaaacgaggatgcagggggctaggttgcccgttgctgaagaggacgaggacgtggaagaagaggaccatgaggaagaaaaagggtttcgccggagatcgagaaagcaaatgggcgccgcggctgcgacggggtcctcatcgccgcagacgccggagatgaaggcggtgccgccgccgttgccggagtccaagggtgcggcttgggactatttcttcatggtggataacatgccggggcatagcttgagtgagaatgaaggtgaagagtttggtgaagatgagaatgtggatgatttgggtgatggggatgagcccaagaccccggagaaagagaaggagattcaggtgaagccggaatcggagattccgattccggtgtctccagtgactccggcgacaattgagcattcgaagacagccccatcggattttcagaggatggtgatgcccggttttactttgatggaaatattgaatcagattgatgatcatttcttaaaggcctcggagagtgctcaggaggtttccaagatgcttgaggccactcgattgcattatcactcgaattttgctgataatcgaggacacattgatcattctgcacgagtcatgcgtgttattacatggaataaatccttcagaggcttaccaaatggtgatggagcaaaggaggaagattcagatgattatgaaactcatgccactgttttggataagttgttagcatgggagaagaaactttatgatgaagtgaagcaaggggagcttatgaaggttgagtatcagagaaaggttgctctactaaacaagcagaaaaaacgcaatgctagtgctgaaaccttggaaaaaacgaaagcagcagtaagtcacttgcatacaagatatattgttgacatgcagtccatggactctacagtttcagaagtgaatcagatacgggatgagcagctgtaccctaaacttgtttctctagctgacacgatgggaaaaatgtgggaaaatatgcatgcgcgtcatgacagccagctgaagattgttatggacctgaaaacccttgacattgcccatactccgatggaaacgaccaagcaccaccatgaacgcactgaacagctatttaatgttgtccaacattggcattccgaatttgaaaagcttgtgattcatcagaaacaatacatccaagcattgaatagctggttgaagttgaatctgattcctattgaaagcagcttaaaagagaaaatctcttctccgccaagagttcagcgtcccccaattcaaccgcttctccatgcatggcatgactttcttgaaaagcttcctgatgaacttgcaaaatctgcaacagcatcctttgcggctgtgataaagactatattacttcatcaggaggaagagatgaagctaaaggagcaatatgagaatacaaggaaggactacatgcgaaaaaatcaggcatttcaagactggtgccagaagtatatgcagcgtaaggggcctggtgaagcagatcaggagaaaagtgaagatgcgaaccacaaggatcctattgcagagaggcaatttgcagttgagagcttgaagaagaaaatggaagaggaagctgaagctcaccagagacattgtatccaggtcagagagaagtcacttgggagtctcaaaactcgattgcctgagctcttccgtgcaatgtcagactatgctcacacatgtgctgatgcttacggaaaacttaggtccatcacaatgccacaagcttcaaatgcgctcgtcggcgttggtttgccatgccgatttgagctgctgccgggcggtcggattgtgcagggatggtgggtgtcgtcgaaagctttcacgacctgcggcggtaggggcttcgtcaagggatttccagaacctgtgacggtggcgtggctatggcgatctggaccgatcatggtggcagtgtggctaggcggttctgcggagtttcgtgaggggtcgcagcagctgtgggtctggcggcgttggaggttgaggatgggtggcgggcacgggtcaaccttctttgctgagccttgggctaggcccattctcttggggctgcccctcttgggccttaatttggggtggggtgttttgccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF630 DUF632

Protein Analysis

830

Amino Acids

94.05

Weight (kDa)

5.99

Isoelectric Point (pI)

51.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25590
fragaria_vesca	FvH4_2g36270
malus_domestica	MD08G1120200.v1.1 MD15G1099400.v1.1
prunus_persica	Prupe.1G454100_v2.0.a1
pyrus_communis	pycom15g09140
rosa_chinensis	RchiOBHm_Chr6g0305621
rosa_laevigata	RLG00000010872 RLG00000018217
rosa_multiflora	Rmu_co8402805.1_g000001 Rmu_co8491339.1_g000001 Rmu_sc0001809.1_g000015
rosa_roxburghii	Rroxscaffold_7G00162520
rosa_rugosa	Rorug06G0342200
rosa_samantha	Rh2AG452300 Rh4BG182200 Rh6AG454100 Rh6BG447400 Rh6CG467800 Rh6DG454400
rosa_wichuraiana	Rw6G039590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2234
AccB1I	GGYRCC	4 cut(s)	146, 476, 529, 1836
AccBSI	CCGCTC	2 cut(s)	58, 271
AccII	CGCG	5 cut(s)	11, 104, 327, 482, 1375
AclWI	GGATC	2 cut(s)	1904, 1917
AcoI	YGGCCR	4 cut(s)	87, 105, 166, 221
AcsI	RAATTY	2 cut(s)	928, 1508
AcuI	CTGAAG	4 cut(s)	420, 985, 1412, 1992
AcyI	GRCGYC	3 cut(s)	147, 477, 512
AfaI	GTAC	1 cut(s)	1316
AfiI	CCNNNNNNNGG	2 cut(s)	2459, 2470
AflII	CTTAAG	1 cut(s)	154
AflIII	ACRYGT	1 cut(s)	2075
AhdI	GACNNNNNGTC	1 cut(s)	1261
AjiI	CACGTC	1 cut(s)	415
AjnI	CCWGG	2 cut(s)	1864, 1995
AleI	CACNNNNGTG	1 cut(s)	2076
Alw21I	GWGCWC	3 cut(s)	279, 880, 2046
Alw26I	GTCTC	3 cut(s)	747, 1978, 2027
AlwI	GGATC	2 cut(s)	1904, 1917
AlwNI	CAGNNNCTG	2 cut(s)	2264, 2356
Ama87I	CYCGRG	1 cut(s)	272
ApoI	RAATTY	2 cut(s)	928, 1508
Asp700I	GAANNNNTTC	2 cut(s)	1683, 2216
AspLEI	GCGC	8 cut(s)	11, 13, 149, 327, 329, 479, 1375, 2134
AsuC2I	CCSGG	4 cut(s)	597, 686, 813, 2175
AsuHPI	GGTGA	8 cut(s)	635, 647, 674, 721, 817, 1031, 1880, 1970
AsuII	TTCGAA	1 cut(s)	773
AvaI	CYCGRG	1 cut(s)	272
AvaII	GGWCC	7 cut(s)	229, 358, 427, 495, 1405, 2103, 2294
BaeGI	GKGCMC	1 cut(s)	2400
BalI	TGGCCA	1 cut(s)	89
BamHI	GGATCC	1 cut(s)	1909
BanI	GGYRCC	4 cut(s)	146, 476, 529, 1836
BanII	GRGCYC	2 cut(s)	678, 2046
BauI	CACGAG	1 cut(s)	966
BbsI	GAAGAC	1 cut(s)	782
Bbv12I	GWGCWC	3 cut(s)	279, 880, 2046
BceAI	ACGGC	2 cut(s)	181, 523
BciT130I	CCWGG	2 cut(s)	1866, 1997
BciVI	GTATCC	1 cut(s)	2003
BclI	TGATCA	2 cut(s)	850, 955
BcnI	CCSGG	4 cut(s)	597, 686, 813, 2175
BcoDI	GTCTC	3 cut(s)	747, 1978, 2027
BfaI	CTAG	5 cut(s)	384, 1191, 1334, 2318, 2430
BfmI	CTRYAG	1 cut(s)	1275
BfoI	RGCGCY	2 cut(s)	150, 480
BfrI	CTTAAG	1 cut(s)	154
BfuAI	ACCTGC	1 cut(s)	2234
BfuI	GTATCC	1 cut(s)	2003
BglI	GCCNNNNNGGC	1 cut(s)	104
BlpI	GCTNAGC	1 cut(s)	2418
Bme1390I	CCNGG	6 cut(s)	597, 686, 813, 1866, 1997, 2175
Bme18I	GGWCC	7 cut(s)	229, 358, 427, 495, 1405, 2103, 2294
BmeRI	GACNNNNNGTC	1 cut(s)	1261
BmeT110I	CYCGRG	1 cut(s)	272
BmgBI	CACGTC	1 cut(s)	415
BmiI	GGNNCC	9 cut(s)	65, 148, 231, 478, 496, 531, 1838, 1863, 1911
BmrFI	CCNGG	6 cut(s)	597, 686, 813, 1866, 1997, 2175
BmsI	GCATC	8 cut(s)	38, 336, 363, 798, 885, 1724, 1885, 2074
BoxI	GACNNNNGTC	1 cut(s)	356
BpiI	GAAGAC	1 cut(s)	782
BplI	GAGNNNNNCTC	2 cut(s)	1595, 1627
BpmI	CTGGAG	1 cut(s)	729
Bpu10I	CCTNAGC	2 cut(s)	879, 2040
Bpu1102I	GCTNAGC	1 cut(s)	2418
Bpu14I	TTCGAA	1 cut(s)	773
BpuEI	CTTGAG	2 cut(s)	628, 920
BpuMI	CCSGG	4 cut(s)	597, 686, 813, 2175
BsaHI	GRCGYC	3 cut(s)	147, 477, 512
BsaJI	CCNNGG	9 cut(s)	169, 480, 552, 596, 684, 867, 1203, 1266, 2423
BsaWI	WCCGGW	1 cut(s)	736
BsaXI	ACNNNNNCTCC	2 cut(s)	1638, 1668
Bsc4I	CCNNNNNNNGG	2 cut(s)	2459, 2470
Bse118I	RCCGGY	2 cut(s)	107, 143
Bse1I	ACTGG	3 cut(s)	231, 746, 1838
Bse3DI	GCAATG	3 cut(s)	1192, 1422, 2061
BseBI	CCWGG	2 cut(s)	1866, 1997
BseDI	CCNNGG	9 cut(s)	169, 480, 552, 596, 684, 867, 1203, 1266, 2423
BseGI	GGATG	9 cut(s)	378, 658, 676, 807, 1309, 1542, 1715, 2201, 2391
BseLI	CCNNNNNNNGG	2 cut(s)	2459, 2470
BseMI	GCAATG	3 cut(s)	1192, 1422, 2061
BseMII	CTCAG	3 cut(s)	893, 2031, 2409
BseNI	ACTGG	3 cut(s)	231, 746, 1838
BsePI	GCGCGC	2 cut(s)	9, 325
BseRI	GAGGAG	3 cut(s)	194, 249, 252
BseSI	GKGCMC	1 cut(s)	2400
BseX3I	CGGCCG	1 cut(s)	105
BsgI	GTGCAG	2 cut(s)	948, 2210
Bsh1236I	CGCG	5 cut(s)	11, 104, 327, 482, 1375
Bsh1285I	CGRYCG	3 cut(s)	108, 321, 2182
BshNI	GGYRCC	4 cut(s)	146, 476, 529, 1836
BsiEI	CGRYCG	3 cut(s)	108, 321, 2182
BsiHKAI	GWGCWC	3 cut(s)	279, 880, 2046
BsiHKCI	CYCGRG	1 cut(s)	272
BslFI	GGGAC	2 cut(s)	581, 1620
BslI	CCNNNNNNNGG	2 cut(s)	2459, 2470
BsmAI	GTCTC	3 cut(s)	747, 1978, 2027
BsmFI	GGGAC	2 cut(s)	581, 1620
BsmI	GAATGC	2 cut(s)	769, 1501
BsoBI	CYCGRG	1 cut(s)	272
Bsp119I	TTCGAA	1 cut(s)	773
Bsp1286I	GDGCHC	5 cut(s)	279, 678, 880, 2046, 2400
Bsp143I	GATC	8 cut(s)	318, 458, 850, 955, 1876, 1909, 2288, 2298
Bsp1720I	GCTNAGC	1 cut(s)	2418
Bsp19I	CCATGG	1 cut(s)	1266
BspCNI	CTCAG	3 cut(s)	892, 2032, 2410
BspFNI	CGCG	5 cut(s)	11, 104, 327, 482, 1375
BspHI	TCATGA	1 cut(s)	1378
BspLI	GGNNCC	9 cut(s)	65, 148, 231, 478, 496, 531, 1838, 1863, 1911
BspMI	ACCTGC	1 cut(s)	2234
BspPI	GGATC	2 cut(s)	1904, 1917
BspQI	GCTCTTC	2 cut(s)	189, 2051
BspT104I	TTCGAA	1 cut(s)	773
BspT107I	GGYRCC	4 cut(s)	146, 476, 529, 1836
BspTI	CTTAAG	1 cut(s)	154
BsrBI	CCGCTC	2 cut(s)	58, 271
BsrDI	GCAATG	3 cut(s)	1192, 1422, 2061
BsrFI	RCCGGY	2 cut(s)	107, 143
BsrI	ACTGG	3 cut(s)	231, 746, 1838
BssAI	RCCGGY	2 cut(s)	107, 143
BssECI	CCNNGG	9 cut(s)	169, 480, 552, 596, 684, 867, 1203, 1266, 2423
BssHII	GCGCGC	2 cut(s)	9, 325
BssMI	GATC	8 cut(s)	318, 458, 850, 955, 1876, 1909, 2288, 2298
BssNI	GRCGYC	3 cut(s)	147, 477, 512
BssSI	CACGAG	1 cut(s)	966
BssT1I	CCWWGG	4 cut(s)	552, 1203, 1266, 2423
Bst2BI	CACGAG	1 cut(s)	966
Bst2UI	CCWGG	2 cut(s)	1866, 1997
Bst4CI	ACNGT	3 cut(s)	1069, 1279, 2272
Bst6I	CTCTTC	8 cut(s)	189, 396, 417, 621, 1618, 1755, 1956, 2051
BstACI	GRCGYC	3 cut(s)	147, 477, 512
BstAFI	CTTAAG	1 cut(s)	154
BstAPI	GCANNNNNTGC	2 cut(s)	1706, 1721
BstBI	TTCGAA	1 cut(s)	773
BstC8I	GCNNGC	6 cut(s)	11, 327, 338, 1371, 1388, 2396
BstDEI	CTNAG	5 cut(s)	879, 2040, 2099, 2418, 2490
BstDSI	CCRYGG	3 cut(s)	169, 480, 1266
BstF5I	GGATG	9 cut(s)	378, 658, 676, 807, 1309, 1542, 1715, 2201, 2391
BstFNI	CGCG	5 cut(s)	11, 104, 327, 482, 1375
BstH2I	RGCGCY	2 cut(s)	150, 480
BstHHI	GCGC	8 cut(s)	11, 13, 149, 327, 329, 479, 1375, 2134
BstKTI	GATC	8 cut(s)	321, 461, 853, 958, 1879, 1912, 2291, 2301
BstMAI	GTCTC	3 cut(s)	747, 1978, 2027
BstMBI	GATC	8 cut(s)	318, 458, 850, 955, 1876, 1909, 2288, 2298
BstMCI	CGRYCG	3 cut(s)	108, 321, 2182
BstNI	CCWGG	2 cut(s)	1866, 1997
BstNSI	RCATGY	5 cut(s)	595, 1261, 1373, 1810, 2079
BstPAI	GACNNNNGTC	1 cut(s)	356
BstSCI	CCNGG	6 cut(s)	595, 684, 811, 1864, 1995, 2173
BstSFI	CTRYAG	1 cut(s)	1275
BstSLI	GKGCMC	1 cut(s)	2400
BstUI	CGCG	5 cut(s)	11, 104, 327, 482, 1375
BstV2I	GAAGAC	1 cut(s)	782
BstX2I	RGATCY	1 cut(s)	1909
BstXI	CCANNNNNNTGG	2 cut(s)	1072, 2443
BstYI	RGATCY	1 cut(s)	1909
BstZI	CGGCCG	1 cut(s)	105
BsuI	GTATCC	1 cut(s)	2003
BtgI	CCRYGG	3 cut(s)	169, 480, 1266
BtgZI	GCGATG	1 cut(s)	486
BtrI	CACGTC	1 cut(s)	415
BtsCI	GGATG	9 cut(s)	378, 658, 676, 807, 1309, 1542, 1715, 2201, 2391
BtsI	GCAGTG	1 cut(s)	2316
BtsIMutI	CAGTG	5 cut(s)	224, 753, 1065, 1467, 2316
BveI	ACCTGC	1 cut(s)	2234
Cac8I	GCNNGC	6 cut(s)	11, 327, 338, 1371, 1388, 2396
CaiI	CAGNNNCTG	2 cut(s)	2264, 2356
CciI	TCATGA	1 cut(s)	1378
CfoI	GCGC	8 cut(s)	11, 13, 149, 327, 329, 479, 1375, 2134
Cfr10I	RCCGGY	2 cut(s)	107, 143
Cfr42I	CCGCGG	1 cut(s)	483
CseI	GACGC	3 cut(s)	520, 1364, 1622
Csp6I	GTAC	1 cut(s)	1315
CviQI	GTAC	1 cut(s)	1315
DdeI	CTNAG	5 cut(s)	879, 2040, 2099, 2418, 2490
DinI	GGCGCC	2 cut(s)	148, 478
DpnI	GATC	8 cut(s)	320, 460, 852, 957, 1878, 1911, 2290, 2300
DpnII	GATC	8 cut(s)	318, 458, 850, 955, 1876, 1909, 2288, 2298
DriI	GACNNNNNGTC	1 cut(s)	1261
EaeI	YGGCCR	4 cut(s)	87, 105, 166, 221
EagI	CGGCCG	1 cut(s)	105
Eam1104I	CTCTTC	8 cut(s)	189, 396, 417, 621, 1618, 1755, 1956, 2051
Eam1105I	GACNNNNNGTC	1 cut(s)	1261
EarI	CTCTTC	8 cut(s)	189, 396, 417, 621, 1618, 1755, 1956, 2051
EciI	GGCGGA	4 cut(s)	243, 255, 276, 1608
Ecl136II	GAGCTC	1 cut(s)	2044
EclXI	CGGCCG	1 cut(s)	105
Eco130I	CCWWGG	4 cut(s)	552, 1203, 1266, 2423
Eco147I	AGGCCT	1 cut(s)	866
Eco24I	GRGCYC	2 cut(s)	678, 2046
Eco47I	GGWCC	7 cut(s)	229, 358, 427, 495, 1405, 2103, 2294
Eco52I	CGGCCG	1 cut(s)	105
Eco53kI	GAGCTC	1 cut(s)	2044
Eco57I	CTGAAG	4 cut(s)	420, 985, 1412, 1992
Eco88I	CYCGRG	1 cut(s)	272
EcoICRI	GAGCTC	1 cut(s)	2044
EcoO109I	RGGNCCY	3 cut(s)	358, 495, 1862
EcoRII	CCWGG	2 cut(s)	1864, 1995
EcoT14I	CCWWGG	4 cut(s)	552, 1203, 1266, 2423
EcoT22I	ATGCAT	2 cut(s)	1371, 1663
EcoT38I	GRGCYC	2 cut(s)	678, 2046
EgeI	GGCGCC	2 cut(s)	148, 478
EheI	GGCGCC	2 cut(s)	148, 478
ErhI	CCWWGG	4 cut(s)	552, 1203, 1266, 2423
FalI	AAGNNNNNCTT	2 cut(s)	1113, 1145
FaqI	GGGAC	2 cut(s)	581, 1620
FauI	CCCGC	2 cut(s)	321, 2387
FbaI	TGATCA	2 cut(s)	850, 955
FokI	GGATG	9 cut(s)	385, 665, 683, 814, 1316, 1529, 1702, 2208, 2398
FriOI	GRGCYC	2 cut(s)	678, 2046
FspBI	CTAG	5 cut(s)	384, 1191, 1334, 2318, 2430
GlaI	GCGC	8 cut(s)	10, 12, 148, 326, 328, 478, 1374, 2133
GsuI	CTGGAG	1 cut(s)	729
HaeII	RGCGCY	2 cut(s)	150, 480
HgaI	GACGC	3 cut(s)	520, 1364, 1622
HhaI	GCGC	8 cut(s)	11, 13, 149, 327, 329, 479, 1375, 2134
Hin1I	GRCGYC	3 cut(s)	147, 477, 512
Hin6I	GCGC	8 cut(s)	9, 11, 147, 325, 327, 477, 1373, 2132
HinP1I	GCGC	8 cut(s)	9, 11, 147, 325, 327, 477, 1373, 2132
HincII	GTYRAC	2 cut(s)	1255, 2406
HindII	GTYRAC	2 cut(s)	1255, 2406
HindIII	AAGCTT	4 cut(s)	1517, 1682, 2121, 2214
HphI	GGTGA	8 cut(s)	635, 647, 674, 721, 817, 1031, 1880, 1970
Hpy166II	GTNNAC	2 cut(s)	1255, 2406
Hpy8I	GTNNAC	2 cut(s)	1255, 2406
Hpy99I	CGWCG	5 cut(s)	346, 355, 493, 2141, 2212
HpyAV	CCTTC	8 cut(s)	109, 517, 614, 691, 1009, 1129, 1792, 2419
HpyCH4III	ACNGT	3 cut(s)	1069, 1279, 2272
HpyCH4IV	ACGT	2 cut(s)	123, 414
HpyF3I	CTNAG	5 cut(s)	879, 2040, 2099, 2418, 2490
HpySE526I	ACGT	2 cut(s)	123, 414
Hsp92I	GRCGYC	3 cut(s)	147, 477, 512
HspAI	GCGC	8 cut(s)	9, 11, 147, 325, 327, 477, 1373, 2132
KasI	GGCGCC	2 cut(s)	146, 476
Ksp22I	TGATCA	2 cut(s)	850, 955
KspI	CCGCGG	1 cut(s)	483
Kzo9I	GATC	8 cut(s)	318, 458, 850, 955, 1876, 1909, 2288, 2298
LguI	GCTCTTC	2 cut(s)	189, 2051
LmnI	GCTCC	4 cut(s)	55, 1025, 1126, 1777
LweI	GCATC	8 cut(s)	38, 336, 363, 798, 885, 1724, 1885, 2074
MaeI	CTAG	5 cut(s)	384, 1191, 1334, 2318, 2430
MaeII	ACGT	2 cut(s)	123, 414
MaeIII	GTNAC	4 cut(s)	748, 1229, 2010, 2266
MalI	GATC	8 cut(s)	320, 460, 852, 957, 1878, 1911, 2290, 2300
MbiI	CCGCTC	2 cut(s)	58, 271
MboI	GATC	8 cut(s)	318, 458, 850, 955, 1876, 1909, 2288, 2298
MfeI	CAATTG	1 cut(s)	762
MflI	RGATCY	1 cut(s)	1909
MhlI	GDGCHC	5 cut(s)	279, 678, 880, 2046, 2400
MlsI	TGGCCA	1 cut(s)	89
MluCI	AATT	6 cut(s)	762, 928, 1508, 1641, 1928, 2467
MluNI	TGGCCA	1 cut(s)	89
Mly113I	GGCGCC	2 cut(s)	147, 477
MlyI	GAGTC	5 cut(s)	557, 745, 978, 1265, 2029
MmeI	TCCRAC	3 cut(s)	1516, 2162, 2354
Mox20I	TGGCCA	1 cut(s)	89
Mph1103I	ATGCAT	2 cut(s)	1371, 1663
MroXI	GAANNNNTTC	2 cut(s)	1683, 2216
MscI	TGGCCA	1 cut(s)	89
MseI	TTAA	6 cut(s)	155, 363, 860, 1482, 1598, 2466
MslI	CAYNNNNRTG	3 cut(s)	1458, 2076, 2111
Msp20I	TGGCCA	1 cut(s)	89
MspA1I	CMGCKG	5 cut(s)	220, 482, 1312, 1390, 2356
MspCI	CTTAAG	1 cut(s)	154
MspR9I	CCNGG	6 cut(s)	597, 686, 813, 1866, 1997, 2175
MunI	CAATTG	1 cut(s)	762
Mva1269I	GAATGC	2 cut(s)	769, 1501
MvaI	CCWGG	2 cut(s)	1866, 1997
MvnI	CGCG	5 cut(s)	11, 104, 327, 482, 1375
NarI	GGCGCC	2 cut(s)	147, 477
NciI	CCSGG	4 cut(s)	597, 686, 813, 2175
NcoI	CCATGG	1 cut(s)	1266
NdeII	GATC	8 cut(s)	318, 458, 850, 955, 1876, 1909, 2288, 2298
NlaIV	GGNNCC	9 cut(s)	65, 148, 231, 478, 496, 531, 1838, 1863, 1911
NmuCI	GTSAC	4 cut(s)	748, 1229, 2010, 2266
NsiI	ATGCAT	2 cut(s)	1371, 1663
NspI	RCATGY	5 cut(s)	595, 1261, 1373, 1810, 2079
NspV	TTCGAA	1 cut(s)	773
OliI	CACNNNNGTG	1 cut(s)	2076
PaeI	GCATGC	1 cut(s)	1373
PaeR7I	CTCGAG	1 cut(s)	272
PagI	TCATGA	1 cut(s)	1378
PauI	GCGCGC	2 cut(s)	9, 325
PceI	AGGCCT	1 cut(s)	866
PciI	ACATGT	1 cut(s)	2075
PciSI	GCTCTTC	2 cut(s)	189, 2051
PcsI	WCGNNNNNNNCGW	2 cut(s)	728, 973
PctI	GAATGC	2 cut(s)	769, 1501
PdmI	GAANNNNTTC	2 cut(s)	1683, 2216
PflFI	GACNNNGTC	1 cut(s)	493
Ple19I	CGATCG	1 cut(s)	321
PleI	GAGTC	5 cut(s)	556, 745, 977, 1265, 2028
PluTI	GGCGCC	2 cut(s)	150, 480
PpsI	GAGTC	5 cut(s)	556, 745, 977, 1265, 2028
PpuMI	RGGWCCY	2 cut(s)	358, 495
PscI	ACATGT	1 cut(s)	2075
PshAI	GACNNNNGTC	1 cut(s)	356
Psp124BI	GAGCTC	1 cut(s)	2046
Psp5II	RGGWCCY	2 cut(s)	358, 495
Psp6I	CCWGG	2 cut(s)	1864, 1995
PspGI	CCWGG	2 cut(s)	1864, 1995
PspN4I	GGNNCC	9 cut(s)	65, 148, 231, 478, 496, 531, 1838, 1863, 1911
PspPPI	RGGWCCY	2 cut(s)	358, 495
PspXI	VCTCGAGB	1 cut(s)	272
PstNI	CAGNNNCTG	2 cut(s)	2264, 2356
PsuI	RGATCY	1 cut(s)	1909
PsyI	GACNNNGTC	1 cut(s)	493
PteI	GCGCGC	2 cut(s)	9, 325
PvuI	CGATCG	1 cut(s)	321
PvuII	CAGCTG	3 cut(s)	1312, 1390, 2356
RsaI	GTAC	1 cut(s)	1316
RsaNI	GTAC	1 cut(s)	1315
RseI	CAYNNNNRTG	3 cut(s)	1458, 2076, 2111
SacI	GAGCTC	1 cut(s)	2046
SacII	CCGCGG	1 cut(s)	483
SapI	GCTCTTC	2 cut(s)	189, 2051
SaqAI	TTAA	6 cut(s)	155, 363, 860, 1482, 1598, 2466
Sau3AI	GATC	8 cut(s)	318, 458, 850, 955, 1876, 1909, 2288, 2298
SchI	GAGTC	5 cut(s)	557, 745, 978, 1265, 2029
ScrFI	CCNGG	6 cut(s)	597, 686, 813, 1866, 1997, 2175
SduI	GDGCHC	5 cut(s)	279, 678, 880, 2046, 2400
SfaNI	GCATC	8 cut(s)	38, 336, 363, 798, 885, 1724, 1885, 2074
SfcI	CTRYAG	1 cut(s)	1275
SfoI	GGCGCC	2 cut(s)	148, 478
Sfr274I	CTCGAG	1 cut(s)	272
Sfr303I	CCGCGG	1 cut(s)	483
SfuI	TTCGAA	1 cut(s)	773
SgrAI	CRCCGGYG	1 cut(s)	143
SgrBI	CCGCGG	1 cut(s)	483
SinI	GGWCC	7 cut(s)	229, 358, 427, 495, 1405, 2103, 2294
SlaI	CTCGAG	1 cut(s)	272
SmiMI	CAYNNNNRTG	3 cut(s)	1458, 2076, 2111
SmlI	CTYRAG	4 cut(s)	154, 272, 607, 899
SmoI	CTYRAG	4 cut(s)	154, 272, 607, 899
SphI	GCATGC	1 cut(s)	1373
Sse9I	AATT	6 cut(s)	762, 928, 1508, 1641, 1928, 2467
SseBI	AGGCCT	1 cut(s)	866
SspDI	GGCGCC	2 cut(s)	146, 476
SspI	AATATT	1 cut(s)	834
SspMI	CTAG	5 cut(s)	384, 1191, 1334, 2318, 2430
SstI	GAGCTC	1 cut(s)	2046
StuI	AGGCCT	1 cut(s)	866
StyD4I	CCNGG	6 cut(s)	595, 684, 811, 1864, 1995, 2173
StyI	CCWWGG	4 cut(s)	552, 1203, 1266, 2423
TaaI	ACNGT	3 cut(s)	1069, 1279, 2272
TaiI	ACGT	2 cut(s)	126, 417
TaqII	GACCGA	1 cut(s)	2311
TasI	AATT	6 cut(s)	762, 928, 1508, 1641, 1928, 2467
Tru1I	TTAA	6 cut(s)	155, 363, 860, 1482, 1598, 2466
Tru9I	TTAA	6 cut(s)	155, 363, 860, 1482, 1598, 2466
TscAI	CASTG	5 cut(s)	231, 753, 1072, 1474, 2316
TseFI	GTSAC	4 cut(s)	748, 1229, 2010, 2266
Tsp45I	GTSAC	4 cut(s)	748, 1229, 2010, 2266
TspGWI	ACGGA	4 cut(s)	186, 368, 2039, 2106
TspRI	CASTG	5 cut(s)	231, 753, 1072, 1474, 2316
Tth111I	GACNNNGTC	1 cut(s)	493
Vha464I	CTTAAG	1 cut(s)	154
VpaK11BI	GGWCC	7 cut(s)	229, 358, 427, 495, 1405, 2103, 2294
XapI	RAATTY	2 cut(s)	928, 1508
XceI	RCATGY	5 cut(s)	595, 1261, 1373, 1810, 2079
XhoI	CTCGAG	1 cut(s)	272
XmnI	GAANNNNTTC	2 cut(s)	1683, 2216
XspI	CTAG	5 cut(s)	384, 1191, 1334, 2318, 2430
Zsp2I	ATGCAT	2 cut(s)	1371, 1663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.