Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8491339.1

Orthogroup ID

OG0009861

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2230

Gene Structure 2230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8491339.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1141 bp

atgcgtgttattacatggaataaatccttcagaggcttaccaaatggtgatggagcaaaggaggaagattcagatgattatgaaactcatgccactgttttggataagttgttagcatgggagaagaaactttatgatgaagtgaaggttgagtatcagagaaaggttgctctactaaacaagcagaaaaaacgcaatgctagtgctgaaaccttggaaaaaacgaaagcagcagtaagtcacttgcatacaagatatattgttgacatgcagtccatggactctacagtttcagaagtgaatcagatacgggatgagcagctgtaccctaaacttgtttctctagctgacacgatgggaaaaatgtgggaaaatatgcatgcgcgtcatgacagccagctgaagattgttatggacctgaaaacccttgacattgcccatactccgatggaaacgaccaagcaccaccatgaacgcactgaacagctatttaatgttgtccaacattggcattccgaatttgaaaagcttgtgattcatcagaaacaatacatccaagcattgaatagctggttgaagttgaatctgattcctattgaaagcagcttaaaagagaaaatctcttctccgccaagagttcagcgtcccccaattcaaccgcttctccatgcatggcatgactttcttgaaaagcttcctgatgaacttgcaaaatctgcaacagcatcctttgcggctgtgataaagactatattacttcatcaggaggaagagatgaagctaaaggagcaatatgagaatacaaggaaggactacatgcgaaaaaatcaggcatttcaagactggtgccagaagtatatgcagcgtaaggggcctggtgaagcagatcaggagaaaagtgaagatgcgaaccacaaggatcctattgcagagaggcaatttgcagttgagagcttgaagaagaaaatggaagaggaagctgaagctcaccagagacattgtatccaggtcagagagaagtcacttgggagtctcaaaactcgattgcctgagctcttccgtgcaatgtcagactatgctcacacatgtgctgatgcttacggaaaacttaggtccatcacaatgccacaagcttcaaatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF630 DUF632

Protein Analysis

380

Amino Acids

44.38

Weight (kDa)

7.34

Isoelectric Point (pI)

37.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25590
fragaria_vesca	FvH4_2g36270
malus_domestica	MD08G1120200.v1.1 MD15G1099400.v1.1
prunus_persica	Prupe.1G454100_v2.0.a1
pyrus_communis	pycom15g09140
rosa_chinensis	RchiOBHm_Chr6g0305621
rosa_laevigata	RLG00000010872 RLG00000018217
rosa_multiflora	Rmu_co8402805.1_g000001 Rmu_co8491339.1_g000001 Rmu_sc0001809.1_g000015
rosa_roxburghii	Rroxscaffold_7G00162520
rosa_rugosa	Rorug06G0342200
rosa_samantha	Rh2AG452300 Rh4BG182200 Rh6AG454100 Rh6BG447400 Rh6CG467800 Rh6DG454400
rosa_wichuraiana	Rw6G039590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	846
AccII	CGCG	1 cut(s)	385
AciI	CCGC	3 cut(s)	629, 659, 734
AclWI	GGATC	2 cut(s)	914, 927
AcsI	RAATTY	1 cut(s)	518
AcuI	CTGAAG	3 cut(s)	13, 422, 1002
AfaI	GTAC	1 cut(s)	326
AflIII	ACRYGT	1 cut(s)	1085
AhdI	GACNNNNNGTC	1 cut(s)	271
AjnI	CCWGG	2 cut(s)	874, 1005
AleI	CACNNNNGTG	1 cut(s)	1086
Alw21I	GWGCWC	1 cut(s)	1056
Alw26I	GTCTC	2 cut(s)	988, 1037
AlwI	GGATC	2 cut(s)	914, 927
AoxI	GGCC	1 cut(s)	872
ApeKI	GCWGC	4 cut(s)	230, 319, 603, 862
ApoI	RAATTY	1 cut(s)	518
Asp700I	GAANNNNTTC	1 cut(s)	693
AspLEI	GCGC	1 cut(s)	385
AspS9I	GGNCC	3 cut(s)	415, 872, 1113
AsuHPI	GGTGA	3 cut(s)	59, 890, 980
AvaII	GGWCC	2 cut(s)	415, 1113
BamHI	GGATCC	1 cut(s)	919
BanI	GGYRCC	1 cut(s)	846
BanII	GRGCYC	1 cut(s)	1056
Bbv12I	GWGCWC	1 cut(s)	1056
BbvI	GCAGC	4 cut(s)	242, 331, 615, 874
BccI	CCATC	4 cut(s)	44, 349, 442, 1124
BciT130I	CCWGG	2 cut(s)	876, 1007
BciVI	GTATCC	1 cut(s)	1013
BcoDI	GTCTC	2 cut(s)	988, 1037
BfaI	CTAG	2 cut(s)	201, 344
BfmI	CTRYAG	1 cut(s)	285
BfuI	GTATCC	1 cut(s)	1013
BisI	GCNGC	5 cut(s)	231, 320, 604, 735, 863
BlsI	GCNGC	5 cut(s)	232, 321, 605, 736, 864
Bme1390I	CCNGG	2 cut(s)	876, 1007
Bme18I	GGWCC	2 cut(s)	415, 1113
BmeRI	GACNNNNNGTC	1 cut(s)	271
BmgT120I	GGNCC	3 cut(s)	415, 872, 1113
BmiI	GGNNCC	3 cut(s)	848, 873, 921
BmrFI	CCNGG	2 cut(s)	876, 1007
BmsI	GCATC	3 cut(s)	734, 895, 1084
BplI	GAGNNNNNCTC	2 cut(s)	605, 637
Bpu10I	CCTNAGC	1 cut(s)	1050
BsaJI	CCNNGG	2 cut(s)	213, 276
BsaXI	ACNNNNNCTCC	2 cut(s)	648, 678
Bse1I	ACTGG	1 cut(s)	848
Bse3DI	GCAATG	3 cut(s)	202, 432, 1071
BseBI	CCWGG	2 cut(s)	876, 1007
BseDI	CCNNGG	2 cut(s)	213, 276
BseGI	GGATG	3 cut(s)	319, 552, 725
BseMI	GCAATG	3 cut(s)	202, 432, 1071
BseMII	CTCAG	1 cut(s)	1041
BseNI	ACTGG	1 cut(s)	848
BseXI	GCAGC	4 cut(s)	242, 331, 615, 874
Bsh1236I	CGCG	1 cut(s)	385
BshFI	GGCC	1 cut(s)	874
BshNI	GGYRCC	1 cut(s)	846
BsiHKAI	GWGCWC	1 cut(s)	1056
BslFI	GGGAC	1 cut(s)	630
BsmAI	GTCTC	2 cut(s)	988, 1037
BsmFI	GGGAC	1 cut(s)	630
BsmI	GAATGC	1 cut(s)	511
BsnI	GGCC	1 cut(s)	874
Bsp1286I	GDGCHC	1 cut(s)	1056
Bsp143I	GATC	2 cut(s)	886, 919
Bsp19I	CCATGG	1 cut(s)	276
BspACI	CCGC	3 cut(s)	629, 659, 734
BspANI	GGCC	1 cut(s)	874
BspCNI	CTCAG	1 cut(s)	1042
BspFNI	CGCG	1 cut(s)	385
BspHI	TCATGA	1 cut(s)	388
BspLI	GGNNCC	3 cut(s)	848, 873, 921
BspPI	GGATC	2 cut(s)	914, 927
BspQI	GCTCTTC	1 cut(s)	1061
BspT107I	GGYRCC	1 cut(s)	846
BsrDI	GCAATG	3 cut(s)	202, 432, 1071
BsrI	ACTGG	1 cut(s)	848
BssECI	CCNNGG	2 cut(s)	213, 276
BssMI	GATC	2 cut(s)	886, 919
BssT1I	CCWWGG	2 cut(s)	213, 276
Bst2UI	CCWGG	2 cut(s)	876, 1007
Bst4CI	ACNGT	2 cut(s)	97, 289
Bst6I	CTCTTC	4 cut(s)	628, 765, 966, 1061
BstAPI	GCANNNNNTGC	2 cut(s)	716, 731
BstC8I	GCNNGC	2 cut(s)	381, 398
BstDEI	CTNAG	2 cut(s)	1050, 1109
BstDSI	CCRYGG	1 cut(s)	276
BstF5I	GGATG	3 cut(s)	319, 552, 725
BstFNI	CGCG	1 cut(s)	385
BstHHI	GCGC	1 cut(s)	385
BstKTI	GATC	2 cut(s)	889, 922
BstMAI	GTCTC	2 cut(s)	988, 1037
BstMBI	GATC	2 cut(s)	886, 919
BstMWI	GCNNNNNNNGC	4 cut(s)	716, 731, 787, 871
BstNI	CCWGG	2 cut(s)	876, 1007
BstNSI	RCATGY	4 cut(s)	271, 383, 820, 1089
BstSCI	CCNGG	2 cut(s)	874, 1005
BstSFI	CTRYAG	1 cut(s)	285
BstUI	CGCG	1 cut(s)	385
BstV1I	GCAGC	4 cut(s)	242, 331, 615, 874
BstX2I	RGATCY	1 cut(s)	919
BstXI	CCANNNNNNTGG	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	919
BsuI	GTATCC	1 cut(s)	1013
BsuRI	GGCC	1 cut(s)	874
BtgI	CCRYGG	1 cut(s)	276
BtsCI	GGATG	3 cut(s)	319, 552, 725
BtsIMutI	CAGTG	2 cut(s)	93, 477
Cac8I	GCNNGC	2 cut(s)	381, 398
CciI	TCATGA	1 cut(s)	388
CfoI	GCGC	1 cut(s)	385
Cfr13I	GGNCC	3 cut(s)	415, 872, 1113
CseI	GACGC	2 cut(s)	374, 632
Csp6I	GTAC	1 cut(s)	325
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	2 cut(s)	1050, 1109
DpnI	GATC	2 cut(s)	888, 921
DpnII	GATC	2 cut(s)	886, 919
DriI	GACNNNNNGTC	1 cut(s)	271
Eam1104I	CTCTTC	4 cut(s)	628, 765, 966, 1061
Eam1105I	GACNNNNNGTC	1 cut(s)	271
EarI	CTCTTC	4 cut(s)	628, 765, 966, 1061
EciI	GGCGGA	1 cut(s)	618
Ecl136II	GAGCTC	1 cut(s)	1054
Eco130I	CCWWGG	2 cut(s)	213, 276
Eco24I	GRGCYC	1 cut(s)	1056
Eco47I	GGWCC	2 cut(s)	415, 1113
Eco53kI	GAGCTC	1 cut(s)	1054
Eco57I	CTGAAG	3 cut(s)	13, 422, 1002
EcoICRI	GAGCTC	1 cut(s)	1054
EcoO109I	RGGNCCY	1 cut(s)	872
EcoRII	CCWGG	2 cut(s)	874, 1005
EcoT14I	CCWWGG	2 cut(s)	213, 276
EcoT22I	ATGCAT	2 cut(s)	381, 673
EcoT38I	GRGCYC	1 cut(s)	1056
ErhI	CCWWGG	2 cut(s)	213, 276
FaqI	GGGAC	1 cut(s)	630
Fnu4HI	GCNGC	5 cut(s)	231, 320, 604, 735, 863
FokI	GGATG	3 cut(s)	326, 539, 712
FriOI	GRGCYC	1 cut(s)	1056
Fsp4HI	GCNGC	5 cut(s)	231, 320, 604, 735, 863
FspBI	CTAG	2 cut(s)	201, 344
GlaI	GCGC	1 cut(s)	384
GluI	GCNGC	5 cut(s)	231, 320, 604, 735, 863
HaeIII	GGCC	1 cut(s)	874
HgaI	GACGC	2 cut(s)	374, 632
HhaI	GCGC	1 cut(s)	385
Hin6I	GCGC	1 cut(s)	383
HinP1I	GCGC	1 cut(s)	383
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HindIII	AAGCTT	3 cut(s)	527, 692, 1131
HinfI	GANTC	7 cut(s)	68, 281, 301, 535, 583, 589, 1030
HphI	GGTGA	3 cut(s)	59, 890, 980
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188III	TCNNGA	6 cut(s)	389, 686, 698, 764, 839, 890
Hpy8I	GTNNAC	1 cut(s)	265
HpyAV	CCTTC	3 cut(s)	37, 139, 802
HpyCH4III	ACNGT	2 cut(s)	97, 289
HpyF10VI	GCNNNNNNNGC	4 cut(s)	716, 731, 787, 871
HpyF3I	CTNAG	2 cut(s)	1050, 1109
HspAI	GCGC	1 cut(s)	383
Kzo9I	GATC	2 cut(s)	886, 919
LguI	GCTCTTC	1 cut(s)	1061
LmnI	GCTCC	2 cut(s)	53, 787
Lsp1109I	GCAGC	4 cut(s)	242, 331, 615, 874
LweI	GCATC	3 cut(s)	734, 895, 1084
MaeI	CTAG	2 cut(s)	201, 344
MaeIII	GTNAC	2 cut(s)	239, 1020
MalI	GATC	2 cut(s)	888, 921
MboI	GATC	2 cut(s)	886, 919
MflI	RGATCY	1 cut(s)	919
MhlI	GDGCHC	1 cut(s)	1056
MluCI	AATT	3 cut(s)	518, 651, 938
MlyI	GAGTC	2 cut(s)	275, 1039
MmeI	TCCRAC	1 cut(s)	526
MnlI	CCTC	5 cut(s)	26, 55, 760, 927, 967
Mph1103I	ATGCAT	2 cut(s)	381, 673
MroXI	GAANNNNTTC	1 cut(s)	693
MseI	TTAA	2 cut(s)	492, 608
MslI	CAYNNNNRTG	3 cut(s)	468, 1086, 1121
MspA1I	CMGCKG	2 cut(s)	322, 400
MspR9I	CCNGG	2 cut(s)	876, 1007
Mva1269I	GAATGC	1 cut(s)	511
MvaI	CCWGG	2 cut(s)	876, 1007
MvnI	CGCG	1 cut(s)	385
MwoI	GCNNNNNNNGC	4 cut(s)	716, 731, 787, 871
NcoI	CCATGG	1 cut(s)	276
NdeII	GATC	2 cut(s)	886, 919
NlaIV	GGNNCC	3 cut(s)	848, 873, 921
NmuCI	GTSAC	2 cut(s)	239, 1020
NsiI	ATGCAT	2 cut(s)	381, 673
NspI	RCATGY	4 cut(s)	271, 383, 820, 1089
OliI	CACNNNNGTG	1 cut(s)	1086
PaeI	GCATGC	1 cut(s)	383
PagI	TCATGA	1 cut(s)	388
PciI	ACATGT	1 cut(s)	1085
PciSI	GCTCTTC	1 cut(s)	1061
PctI	GAATGC	1 cut(s)	511
PdmI	GAANNNNTTC	1 cut(s)	693
PfeI	GAWTC	5 cut(s)	68, 301, 535, 583, 589
PkrI	GCNGC	5 cut(s)	232, 321, 605, 736, 864
PleI	GAGTC	2 cut(s)	275, 1038
PpsI	GAGTC	2 cut(s)	275, 1038
PscI	ACATGT	1 cut(s)	1085
Psp124BI	GAGCTC	1 cut(s)	1056
Psp6I	CCWGG	2 cut(s)	874, 1005
PspGI	CCWGG	2 cut(s)	874, 1005
PspN4I	GGNNCC	3 cut(s)	848, 873, 921
PspPI	GGNCC	3 cut(s)	415, 872, 1113
PsuI	RGATCY	1 cut(s)	919
PvuII	CAGCTG	2 cut(s)	322, 400
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
RseI	CAYNNNNRTG	3 cut(s)	468, 1086, 1121
SacI	GAGCTC	1 cut(s)	1056
SapI	GCTCTTC	1 cut(s)	1061
SaqAI	TTAA	2 cut(s)	492, 608
SatI	GCNGC	5 cut(s)	231, 320, 604, 735, 863
Sau3AI	GATC	2 cut(s)	886, 919
Sau96I	GGNCC	3 cut(s)	415, 872, 1113
SchI	GAGTC	2 cut(s)	275, 1039
ScrFI	CCNGG	2 cut(s)	876, 1007
SduI	GDGCHC	1 cut(s)	1056
SfaNI	GCATC	3 cut(s)	734, 895, 1084
SfcI	CTRYAG	1 cut(s)	285
SinI	GGWCC	2 cut(s)	415, 1113
SmiMI	CAYNNNNRTG	3 cut(s)	468, 1086, 1121
SphI	GCATGC	1 cut(s)	383
Sse9I	AATT	3 cut(s)	518, 651, 938
SsiI	CCGC	3 cut(s)	629, 659, 734
SspMI	CTAG	2 cut(s)	201, 344
SstI	GAGCTC	1 cut(s)	1056
StyD4I	CCNGG	2 cut(s)	874, 1005
StyI	CCWWGG	2 cut(s)	213, 276
TaaI	ACNGT	2 cut(s)	97, 289
TaqI	TCGA	1 cut(s)	1042
TasI	AATT	3 cut(s)	518, 651, 938
TauI	GCSGC	1 cut(s)	737
TfiI	GAWTC	5 cut(s)	68, 301, 535, 583, 589
Tru1I	TTAA	2 cut(s)	492, 608
Tru9I	TTAA	2 cut(s)	492, 608
TscAI	CASTG	2 cut(s)	100, 484
TseFI	GTSAC	2 cut(s)	239, 1020
TseI	GCWGC	4 cut(s)	230, 319, 603, 862
Tsp45I	GTSAC	2 cut(s)	239, 1020
TspDTI	ATGAA	7 cut(s)	96, 153, 486, 527, 717, 749, 791
TspGWI	ACGGA	2 cut(s)	1049, 1116
TspRI	CASTG	2 cut(s)	100, 484
VpaK11BI	GGWCC	2 cut(s)	415, 1113
XapI	RAATTY	1 cut(s)	518
XceI	RCATGY	4 cut(s)	271, 383, 820, 1089
XmnI	GAANNNNTTC	1 cut(s)	693
XspI	CTAG	2 cut(s)	201, 344
Zsp2I	ATGCAT	2 cut(s)	381, 673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.