RLG00000027287

Belongs to the helicase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0014838
Physical Location & Seq
Reverse (-)
10320930 .. 10322034
1105 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027287

Sequence Viewer

Length: 321 bp
ATGTTGAGCTCTGCAGCAGAGTGTATGGCTTCTTATGGGACTACAACCGGTGCTGAGTGTCCTCCTCACTCTGTGCCTTCAACTCCTCGAACAGAGGGTGAAATCTTGCTGTTCCCCACCTTGAAGACCTTCTCCTTTAGTGAACTGAAAAGATCTACCAGGAAATTTCGTTCTGATAATATGTTGGGAGAAGGTGGTTTTGGTTGTGTCTTCAAGGGTTGGGTTGATGGGAATTCACTAACAGCTGCCAAGCCTGGTACTGGCATGGTCATTGCTGTGAAGAAGCTTAACCGACAAAGTCTTCAGGGTCACAAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460
Pfam Domains
Protein Families
Helitron_like_N Herpes_Helicase PIF1 REPA_OB_2

Protein Analysis

107

Amino Acids

11.37

Weight (kDa)

9.18

Isoelectric Point (pI)

50.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 164, 232
AcuI CTGAAG 1 cut(s) 287
AdeI CACNNNGTG 1 cut(s) 73
AfaI GTAC 1 cut(s) 259
AfiI CCNNNNNNNGG 1 cut(s) 260
AgeI ACCGGT 1 cut(s) 47
AgsI TTSAA 3 cut(s) 81, 124, 214
AjnI CCWGG 2 cut(s) 158, 253
AjuI GAANNNNNNNTTGG 2 cut(s) 183, 215
AloI GAACNNNNNNTCC 2 cut(s) 154, 186
AluBI AGCT 3 cut(s) 9, 245, 286
AluI AGCT 3 cut(s) 9, 245, 286
Alw21I GWGCWC 1 cut(s) 11
ApeKI GCWGC 2 cut(s) 14, 245
ApoI RAATTY 2 cut(s) 164, 232
AsiGI ACCGGT 1 cut(s) 47
Asp700I GAANNNNTTC 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 110
BanII GRGCYC 1 cut(s) 11
BbsI GAAGAC 3 cut(s) 131, 202, 293
Bbv12I GWGCWC 1 cut(s) 11
BbvI GCAGC 2 cut(s) 26, 232
BccI CCATC 1 cut(s) 221
BciT130I CCWGG 2 cut(s) 160, 255
BfmI CTRYAG 1 cut(s) 12
BglII AGATCT 1 cut(s) 152
BisI GCNGC 2 cut(s) 15, 246
BlsI GCNGC 2 cut(s) 16, 247
Bme1390I CCNGG 2 cut(s) 160, 255
BmrFI CCNGG 2 cut(s) 160, 255
BpiI GAAGAC 3 cut(s) 131, 202, 293
BsaWI WCCGGW 1 cut(s) 47
Bsc4I CCNNNNNNNGG 1 cut(s) 260
Bse118I RCCGGY 1 cut(s) 47
Bse1I ACTGG 1 cut(s) 265
Bse3DI GCAATG 1 cut(s) 270
BseBI CCWGG 2 cut(s) 160, 255
BseLI CCNNNNNNNGG 1 cut(s) 260
BseMI GCAATG 1 cut(s) 270
BseMII CTCAG 1 cut(s) 45
BseNI ACTGG 1 cut(s) 265
BseRI GAGGAG 2 cut(s) 54, 75
BseXI GCAGC 2 cut(s) 26, 232
BshTI ACCGGT 1 cut(s) 47
BsiHKAI GWGCWC 1 cut(s) 11
BsiSI CCGG 1 cut(s) 48
BslFI GGGAC 1 cut(s) 52
BslI CCNNNNNNNGG 1 cut(s) 260
BsmFI GGGAC 1 cut(s) 52
Bsp1286I GDGCHC 1 cut(s) 11
Bsp143I GATC 1 cut(s) 152
BspCNI CTCAG 1 cut(s) 46
BspMAI CTGCAG 1 cut(s) 16
BsrDI GCAATG 1 cut(s) 270
BsrFI RCCGGY 1 cut(s) 47
BsrI ACTGG 1 cut(s) 265
BssAI RCCGGY 1 cut(s) 47
BssMI GATC 1 cut(s) 152
Bst2UI CCWGG 2 cut(s) 160, 255
BstDEI CTNAG 1 cut(s) 54
BstKTI GATC 1 cut(s) 155
BstMBI GATC 1 cut(s) 152
BstNI CCWGG 2 cut(s) 160, 255
BstSCI CCNGG 2 cut(s) 158, 253
BstSFI CTRYAG 1 cut(s) 12
BstV1I GCAGC 2 cut(s) 26, 232
BstV2I GAAGAC 3 cut(s) 131, 202, 293
BstX2I RGATCY 1 cut(s) 152
BstYI RGATCY 1 cut(s) 152
Cfr10I RCCGGY 1 cut(s) 47
Csp6I GTAC 1 cut(s) 258
CspAI ACCGGT 1 cut(s) 47
CviAII CATG 1 cut(s) 265
CviJI RGCY 5 cut(s) 9, 29, 245, 253, 286
CviKI_1 RGCY 5 cut(s) 9, 29, 245, 253, 286
CviQI GTAC 1 cut(s) 258
DdeI CTNAG 1 cut(s) 54
DpnI GATC 1 cut(s) 154
DpnII GATC 1 cut(s) 152
DraIII CACNNNGTG 1 cut(s) 73
Ecl136II GAGCTC 1 cut(s) 9
Eco24I GRGCYC 1 cut(s) 11
Eco53kI GAGCTC 1 cut(s) 9
Eco57I CTGAAG 1 cut(s) 287
EcoICRI GAGCTC 1 cut(s) 9
EcoRI GAATTC 1 cut(s) 232
EcoRII CCWGG 2 cut(s) 158, 253
EcoT38I GRGCYC 1 cut(s) 11
FaeI CATG 1 cut(s) 268
FaiI YATR 4 cut(s) 26, 36, 182, 266
FaqI GGGAC 1 cut(s) 52
FatI CATG 1 cut(s) 264
Fnu4HI GCNGC 2 cut(s) 15, 246
FriOI GRGCYC 1 cut(s) 11
Fsp4HI GCNGC 2 cut(s) 15, 246
GluI GCNGC 2 cut(s) 15, 246
HapII CCGG 1 cut(s) 48
Hin1II CATG 1 cut(s) 268
HindIII AAGCTT 1 cut(s) 284
HpaII CCGG 1 cut(s) 48
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 1 cut(s) 143
Hpy188I TCNGA 1 cut(s) 175
Hpy8I GTNNAC 1 cut(s) 143
HpyAV CCTTC 3 cut(s) 87, 139, 185
HpyCH4V TGCA 1 cut(s) 14
HpyF3I CTNAG 1 cut(s) 54
Hsp92II CATG 1 cut(s) 268
Kzo9I GATC 1 cut(s) 152
LpnPI CCDG 7 cut(s) 61, 145, 172, 240, 246, 267, 290
Lsp1109I GCAGC 2 cut(s) 26, 232
MaeIII GTNAC 1 cut(s) 308
MalI GATC 1 cut(s) 154
MboI GATC 1 cut(s) 152
MboII GAAGA 4 cut(s) 136, 202, 292, 293
MflI RGATCY 1 cut(s) 152
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 2 cut(s) 164, 232
MnlI CCTC 4 cut(s) 72, 75, 88, 96
MroXI GAANNNNTTC 1 cut(s) 128
MseI TTAA 1 cut(s) 288
MslI CAYNNNNRTG 1 cut(s) 275
MspA1I CMGCKG 1 cut(s) 245
MspI CCGG 1 cut(s) 48
MspR9I CCNGG 2 cut(s) 160, 255
MvaI CCWGG 2 cut(s) 160, 255
NdeII GATC 1 cut(s) 152
NlaIII CATG 1 cut(s) 268
NmuCI GTSAC 1 cut(s) 308
PdmI GAANNNNTTC 1 cut(s) 128
PflFI GACNNNGTC 1 cut(s) 297
PinAI ACCGGT 1 cut(s) 47
PkrI GCNGC 2 cut(s) 16, 247
Psp124BI GAGCTC 1 cut(s) 11
Psp6I CCWGG 2 cut(s) 158, 253
PspGI CCWGG 2 cut(s) 158, 253
PstI CTGCAG 1 cut(s) 16
PsuI RGATCY 1 cut(s) 152
PsyI GACNNNGTC 1 cut(s) 297
PvuII CAGCTG 1 cut(s) 245
RsaI GTAC 1 cut(s) 259
RsaNI GTAC 1 cut(s) 258
RseI CAYNNNNRTG 1 cut(s) 275
SacI GAGCTC 1 cut(s) 11
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 2 cut(s) 15, 246
Sau3AI GATC 1 cut(s) 152
ScrFI CCNGG 2 cut(s) 160, 255
SduI GDGCHC 1 cut(s) 11
SetI ASST 6 cut(s) 11, 122, 131, 196, 247, 288
SfcI CTRYAG 1 cut(s) 12
SmiMI CAYNNNNRTG 1 cut(s) 275
Sse9I AATT 2 cut(s) 164, 232
SstI GAGCTC 1 cut(s) 11
StyD4I CCNGG 2 cut(s) 158, 253
TaqI TCGA 1 cut(s) 88
TasI AATT 2 cut(s) 164, 232
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TseFI GTSAC 1 cut(s) 308
TseI GCWGC 2 cut(s) 14, 245
Tsp45I GTSAC 1 cut(s) 308
Tth111I GACNNNGTC 1 cut(s) 297
XapI RAATTY 2 cut(s) 164, 232
XmnI GAANNNNTTC 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.