Rh3AG032400
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0014838
Physical Location & Seq
Forward (+)
2178607 .. 2191069
12463 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG032400.1

Sequence Viewer

Length: 492 bp
ATGACGGTGAATTCCACTAATGCAGACCTGCATGTGTCATCTGTCTCAGTGCCTTCAACTCCTCGGACAGAGGTTGAGATCTTGCTAAAGAGCTTCTTTTTTAATGAACTGAAAACCGCCACCAGGAACTTTCGGCCTGATAATGTGGTGGGTGAGGGTGGTTTTGGTACTATCTTTAAGGGGTGGATTGATCAGAATTCATTAGCAGCTGCCAAGCCTGGTAAAGGAACGACTGTTGCTATAAAGAGGCTTAACCAAGAAAGTTATCAGGGTCGAGAGGAATGGTTTCGCACCCACATCGGCATGTGGCGCATGCAGCCGGAAGGACTCCTCCTTTTGTGGGATTGTCGTTTTCCTCAGAAGTTCATTTTGGGAGGCAATTTTCTCTCAGATTGCAGACGATGCAATGGTGGGTGCCTCTGGATCGAAATCATTCTGGCCTGGGTTATCGCTATGTTTGGTGAGAGTGGGGTGGCAGGTCCGATGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

163

Amino Acids

18.23

Weight (kDa)

8.42

Isoelectric Point (pI)

35.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 36, 467
AccB1I GGYRCC 1 cut(s) 414
AciI CCGC 1 cut(s) 117
AclWI GGATC 1 cut(s) 431
AcsI RAATTY 2 cut(s) 10, 196
AfaI GTAC 1 cut(s) 169
AfiI CCNNNNNNNGG 3 cut(s) 123, 224, 340
AgsI TTSAA 1 cut(s) 57
AjnI CCWGG 3 cut(s) 122, 217, 440
AjuI GAANNNNNNNTTGG 2 cut(s) 353, 385
AluBI AGCT 2 cut(s) 93, 209
AluI AGCT 2 cut(s) 93, 209
Alw26I GTCTC 1 cut(s) 49
AlwI GGATC 1 cut(s) 431
AoxI GGCC 2 cut(s) 134, 438
ApeKI GCWGC 3 cut(s) 206, 209, 316
ApoI RAATTY 2 cut(s) 10, 196
Asp700I GAANNNNTTC 2 cut(s) 285, 432
AspLEI GCGC 1 cut(s) 312
AspS9I GGNCC 1 cut(s) 479
AsuHPI GGTGA 3 cut(s) 19, 164, 473
AvaII GGWCC 1 cut(s) 479
BanI GGYRCC 1 cut(s) 414
BbvI GCAGC 3 cut(s) 196, 218, 328
BccI CCATC 1 cut(s) 478
BcgI CGANNNNNNTGC 2 cut(s) 280, 314
BciT130I CCWGG 3 cut(s) 124, 219, 442
BclI TGATCA 1 cut(s) 190
BcoDI GTCTC 1 cut(s) 49
BfuAI ACCTGC 2 cut(s) 36, 467
BglII AGATCT 1 cut(s) 78
BisI GCNGC 3 cut(s) 207, 210, 317
BlsI GCNGC 3 cut(s) 208, 211, 318
Bme1390I CCNGG 3 cut(s) 124, 219, 442
Bme18I GGWCC 1 cut(s) 479
BmgT120I GGNCC 1 cut(s) 479
BmiI GGNNCC 1 cut(s) 416
BmrFI CCNGG 3 cut(s) 124, 219, 442
BmsI GCATC 1 cut(s) 392
BsaBI GATNNNNATC 1 cut(s) 428
BsaJI CCNNGG 2 cut(s) 62, 441
Bsc4I CCNNNNNNNGG 3 cut(s) 123, 224, 340
Bse3DI GCAATG 1 cut(s) 412
Bse8I GATNNNNATC 1 cut(s) 428
BseBI CCWGG 3 cut(s) 124, 219, 442
BseDI CCNNGG 2 cut(s) 62, 441
BseJI GATNNNNATC 1 cut(s) 428
BseLI CCNNNNNNNGG 3 cut(s) 123, 224, 340
BseMI GCAATG 1 cut(s) 412
BseMII CTCAG 3 cut(s) 60, 371, 402
BseRI GAGGAG 2 cut(s) 51, 320
BseXI GCAGC 3 cut(s) 196, 218, 328
BshFI GGCC 2 cut(s) 136, 440
BshNI GGYRCC 1 cut(s) 414
BsiSI CCGG 1 cut(s) 320
BslI CCNNNNNNNGG 3 cut(s) 123, 224, 340
BsmAI GTCTC 1 cut(s) 49
BsnI GGCC 2 cut(s) 136, 440
Bsp143I GATC 3 cut(s) 78, 190, 423
BspACI CCGC 1 cut(s) 117
BspANI GGCC 2 cut(s) 136, 440
BspCNI CTCAG 3 cut(s) 59, 370, 401
BspLI GGNNCC 1 cut(s) 416
BspMI ACCTGC 2 cut(s) 36, 467
BspPI GGATC 1 cut(s) 431
BspT107I GGYRCC 1 cut(s) 414
BsrDI GCAATG 1 cut(s) 412
BssECI CCNNGG 2 cut(s) 62, 441
BssMI GATC 3 cut(s) 78, 190, 423
Bst2UI CCWGG 3 cut(s) 124, 219, 442
Bst4CI ACNGT 2 cut(s) 7, 235
BstAPI GCANNNNNTGC 1 cut(s) 402
BstC8I GCNNGC 1 cut(s) 314
BstDEI CTNAG 3 cut(s) 46, 357, 388
BstENI CCTNNNNNAGG 1 cut(s) 222
BstHHI GCGC 1 cut(s) 312
BstKTI GATC 3 cut(s) 81, 193, 426
BstMAI GTCTC 1 cut(s) 49
BstMBI GATC 3 cut(s) 78, 190, 423
BstMWI GCNNNNNNNGC 3 cut(s) 309, 316, 402
BstNI CCWGG 3 cut(s) 124, 219, 442
BstNSI RCATGY 3 cut(s) 35, 307, 316
BstSCI CCNGG 3 cut(s) 122, 217, 440
BstV1I GCAGC 3 cut(s) 196, 218, 328
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
BsuRI GGCC 2 cut(s) 136, 440
BtsIMutI CAGTG 1 cut(s) 54
BveI ACCTGC 2 cut(s) 36, 467
Cac8I GCNNGC 1 cut(s) 314
CfoI GCGC 1 cut(s) 312
Cfr13I GGNCC 1 cut(s) 479
Csp6I GTAC 1 cut(s) 168
CviAII CATG 3 cut(s) 32, 304, 313
CviJI RGCY 7 cut(s) 93, 136, 209, 217, 250, 319, 440
CviKI_1 RGCY 7 cut(s) 93, 136, 209, 217, 250, 319, 440
CviQI GTAC 1 cut(s) 168
DdeI CTNAG 3 cut(s) 46, 357, 388
DpnI GATC 3 cut(s) 80, 192, 425
DpnII GATC 3 cut(s) 78, 190, 423
Eco47I GGWCC 1 cut(s) 479
EcoNI CCTNNNNNAGG 1 cut(s) 222
EcoRI GAATTC 2 cut(s) 10, 196
EcoRII CCWGG 3 cut(s) 122, 217, 440
FaeI CATG 3 cut(s) 35, 307, 316
FaiI YATR 5 cut(s) 33, 242, 305, 314, 455
FalI AAGNNNNNCTT 2 cut(s) 80, 112
FatI CATG 3 cut(s) 31, 303, 312
FbaI TGATCA 1 cut(s) 190
Fnu4HI GCNGC 3 cut(s) 207, 210, 317
Fsp4HI GCNGC 3 cut(s) 207, 210, 317
GlaI GCGC 1 cut(s) 311
GluI GCNGC 3 cut(s) 207, 210, 317
HaeIII GGCC 2 cut(s) 136, 440
HapII CCGG 1 cut(s) 320
HhaI GCGC 1 cut(s) 312
Hin1II CATG 3 cut(s) 35, 307, 316
Hin6I GCGC 1 cut(s) 310
HinP1I GCGC 1 cut(s) 310
HinfI GANTC 1 cut(s) 327
HpaII CCGG 1 cut(s) 320
HphI GGTGA 3 cut(s) 19, 164, 473
Hpy188I TCNGA 5 cut(s) 66, 195, 360, 391, 483
Hpy188III TCNNGA 2 cut(s) 275, 421
HpyAV CCTTC 2 cut(s) 63, 317
HpyCH4III ACNGT 2 cut(s) 7, 235
HpyCH4V TGCA 5 cut(s) 23, 31, 316, 396, 405
HpyF10VI GCNNNNNNNGC 3 cut(s) 309, 316, 402
HpyF3I CTNAG 3 cut(s) 46, 357, 388
Hsp92II CATG 3 cut(s) 35, 307, 316
HspAI GCGC 1 cut(s) 310
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 3 cut(s) 78, 190, 423
Lsp1109I GCAGC 3 cut(s) 196, 218, 328
LweI GCATC 1 cut(s) 392
MalI GATC 3 cut(s) 80, 192, 425
MboI GATC 3 cut(s) 78, 190, 423
MflI RGATCY 1 cut(s) 78
MluCI AATT 3 cut(s) 10, 196, 379
MlyI GAGTC 1 cut(s) 321
MnlI CCTC 9 cut(s) 64, 72, 148, 240, 271, 341, 366, 368, 428
MroXI GAANNNNTTC 2 cut(s) 285, 432
MseI TTAA 3 cut(s) 102, 177, 252
MslI CAYNNNNRTG 1 cut(s) 302
MspA1I CMGCKG 1 cut(s) 209
MspI CCGG 1 cut(s) 320
MspR9I CCNGG 3 cut(s) 124, 219, 442
MvaI CCWGG 3 cut(s) 124, 219, 442
MwoI GCNNNNNNNGC 3 cut(s) 309, 316, 402
NdeII GATC 3 cut(s) 78, 190, 423
NlaIII CATG 3 cut(s) 35, 307, 316
NlaIV GGNNCC 1 cut(s) 416
NspI RCATGY 3 cut(s) 35, 307, 316
PaeI GCATGC 1 cut(s) 316
PdmI GAANNNNTTC 2 cut(s) 285, 432
PkrI GCNGC 3 cut(s) 208, 211, 318
PleI GAGTC 1 cut(s) 321
PpsI GAGTC 1 cut(s) 321
Psp6I CCWGG 3 cut(s) 122, 217, 440
PspGI CCWGG 3 cut(s) 122, 217, 440
PspN4I GGNNCC 1 cut(s) 416
PspPI GGNCC 1 cut(s) 479
PsuI RGATCY 1 cut(s) 78
PvuII CAGCTG 1 cut(s) 209
RsaI GTAC 1 cut(s) 169
RsaNI GTAC 1 cut(s) 168
RseI CAYNNNNRTG 1 cut(s) 302
SaqAI TTAA 3 cut(s) 102, 177, 252
SatI GCNGC 3 cut(s) 207, 210, 317
Sau3AI GATC 3 cut(s) 78, 190, 423
Sau96I GGNCC 1 cut(s) 479
SchI GAGTC 1 cut(s) 321
ScrFI CCNGG 3 cut(s) 124, 219, 442
SetI ASST 5 cut(s) 30, 75, 95, 211, 481
SfaNI GCATC 1 cut(s) 392
SinI GGWCC 1 cut(s) 479
SmiMI CAYNNNNRTG 1 cut(s) 302
SphI GCATGC 1 cut(s) 316
Sse9I AATT 3 cut(s) 10, 196, 379
SsiI CCGC 1 cut(s) 117
StyD4I CCNGG 3 cut(s) 122, 217, 440
TaaI ACNGT 2 cut(s) 7, 235
TaqI TCGA 2 cut(s) 274, 426
TasI AATT 3 cut(s) 10, 196, 379
Tru1I TTAA 3 cut(s) 102, 177, 252
Tru9I TTAA 3 cut(s) 102, 177, 252
TscAI CASTG 1 cut(s) 54
TseI GCWGC 3 cut(s) 206, 209, 316
TspDTI ATGAA 3 cut(s) 120, 189, 355
TspRI CASTG 1 cut(s) 54
VpaK11BI GGWCC 1 cut(s) 479
XagI CCTNNNNNAGG 1 cut(s) 222
XapI RAATTY 2 cut(s) 10, 196
XceI RCATGY 3 cut(s) 35, 307, 316
XmnI GAANNNNTTC 2 cut(s) 285, 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.