Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0014838

Physical Location & Seq

Genomic Coordinates Forward (+)

57818323 .. 57819652

Gene Structure 1330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG342400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGTTGAGCTCTGCTGCAGAGTGTATGGCTTCTTATGGGACTACAACCGGTGCTGAGTGTCCTCCTCATGCTGTGCCTTCAACTCCTCGAACAGAGGGTGAAATCTTGCTGTTCCCCACCTTAAAGACCTTCTCCTTTAGTGAACTGAAAAGATCTACCAGGCAATTTCGTTCTGATAATATGTTGGGAGAAGGTAGTTTTGGTTGTGTCTTCAAGGGTTGGGTTAATGGGAATTCACTAACAGCTGCCAAGCCTGGTACTGGCATGGTCATTGCTGTGAAGAGGCTTAACCGACAAAGTCTTCTGGGTCACAAGGAATGGATGGCCATTGCACAAAATGATTCTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

Helitron_like_N Herpes_Helicase PIF1 REPA_OB_2

Protein Analysis

116

Amino Acids

12.54

Weight (kDa)

9.22

Isoelectric Point (pI)

51.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014838)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g06700
rosa_laevigata	RLG00000027287
rosa_multiflora	Rmu_sc0014291.1_g000006
rosa_rugosa	Rorug01G0336000
rosa_samantha	Rh1AG342400 Rh1BG302800 Rh1BG302900 Rh1CG319100 Rh1CG319300 Rh1DG335200 Rh1DG335400 Rh2AG599800 Rh3AG032400 Rh3BG032700 Rh3CG031500 Rh3DG032300 Rh3DG084100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	324
AcsI	RAATTY	1 cut(s)	232
AfaI	GTAC	1 cut(s)	259
AfiI	CCNNNNNNNGG	1 cut(s)	260
AgeI	ACCGGT	1 cut(s)	47
AgsI	TTSAA	2 cut(s)	81, 214
AjnI	CCWGG	2 cut(s)	158, 253
AjuI	GAANNNNNNNTTGG	2 cut(s)	183, 215
AluBI	AGCT	2 cut(s)	9, 245
AluI	AGCT	2 cut(s)	9, 245
Alw21I	GWGCWC	1 cut(s)	11
AoxI	GGCC	1 cut(s)	324
ApeKI	GCWGC	2 cut(s)	14, 245
ApoI	RAATTY	1 cut(s)	232
AsiGI	ACCGGT	1 cut(s)	47
AsuHPI	GGTGA	1 cut(s)	110
BalI	TGGCCA	1 cut(s)	326
BanII	GRGCYC	1 cut(s)	11
BbsI	GAAGAC	2 cut(s)	202, 293
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	1 cut(s)	232
BccI	CCATC	1 cut(s)	316
BciT130I	CCWGG	2 cut(s)	160, 255
BfmI	CTRYAG	1 cut(s)	15
BglII	AGATCT	1 cut(s)	152
BisI	GCNGC	2 cut(s)	15, 246
BlsI	GCNGC	2 cut(s)	16, 247
Bme1390I	CCNGG	2 cut(s)	160, 255
BmrFI	CCNGG	2 cut(s)	160, 255
BpiI	GAAGAC	2 cut(s)	202, 293
BsaWI	WCCGGW	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
Bse118I	RCCGGY	1 cut(s)	47
Bse1I	ACTGG	1 cut(s)	265
Bse3DI	GCAATG	2 cut(s)	270, 327
BseBI	CCWGG	2 cut(s)	160, 255
BseGI	GGATG	1 cut(s)	327
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseMI	GCAATG	2 cut(s)	270, 327
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	1 cut(s)	265
BseRI	GAGGAG	2 cut(s)	54, 75
BseXI	GCAGC	1 cut(s)	232
BshFI	GGCC	1 cut(s)	326
BshTI	ACCGGT	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	11
BsiSI	CCGG	1 cut(s)	48
BslFI	GGGAC	1 cut(s)	52
BslI	CCNNNNNNNGG	1 cut(s)	260
BsmFI	GGGAC	1 cut(s)	52
BsnI	GGCC	1 cut(s)	326
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	1 cut(s)	152
BspANI	GGCC	1 cut(s)	326
BspCNI	CTCAG	1 cut(s)	46
BspMAI	CTGCAG	1 cut(s)	19
BsrDI	GCAATG	2 cut(s)	270, 327
BsrFI	RCCGGY	1 cut(s)	47
BsrI	ACTGG	1 cut(s)	265
BssAI	RCCGGY	1 cut(s)	47
BssMI	GATC	1 cut(s)	152
Bst2UI	CCWGG	2 cut(s)	160, 255
Bst6I	CTCTTC	1 cut(s)	275
BstDEI	CTNAG	1 cut(s)	54
BstF5I	GGATG	1 cut(s)	327
BstKTI	GATC	1 cut(s)	155
BstMBI	GATC	1 cut(s)	152
BstNI	CCWGG	2 cut(s)	160, 255
BstSCI	CCNGG	2 cut(s)	158, 253
BstSFI	CTRYAG	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	232
BstV2I	GAAGAC	2 cut(s)	202, 293
BstX2I	RGATCY	1 cut(s)	152
BstYI	RGATCY	1 cut(s)	152
BsuRI	GGCC	1 cut(s)	326
BtsCI	GGATG	1 cut(s)	327
Cfr10I	RCCGGY	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	258
CspAI	ACCGGT	1 cut(s)	47
CviAII	CATG	2 cut(s)	68, 265
CviJI	RGCY	6 cut(s)	9, 29, 245, 253, 286, 326
CviKI_1	RGCY	6 cut(s)	9, 29, 245, 253, 286, 326
CviQI	GTAC	1 cut(s)	258
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	1 cut(s)	154
DpnII	GATC	1 cut(s)	152
EaeI	YGGCCR	1 cut(s)	324
Eam1104I	CTCTTC	1 cut(s)	275
EarI	CTCTTC	1 cut(s)	275
Ecl136II	GAGCTC	1 cut(s)	9
Eco24I	GRGCYC	1 cut(s)	11
Eco53kI	GAGCTC	1 cut(s)	9
EcoICRI	GAGCTC	1 cut(s)	9
EcoRI	GAATTC	1 cut(s)	232
EcoRII	CCWGG	2 cut(s)	158, 253
EcoT38I	GRGCYC	1 cut(s)	11
FaeI	CATG	2 cut(s)	71, 268
FaiI	YATR	5 cut(s)	26, 36, 69, 182, 266
FaqI	GGGAC	1 cut(s)	52
FatI	CATG	2 cut(s)	67, 264
Fnu4HI	GCNGC	2 cut(s)	15, 246
FokI	GGATG	1 cut(s)	334
FriOI	GRGCYC	1 cut(s)	11
Fsp4HI	GCNGC	2 cut(s)	15, 246
GluI	GCNGC	2 cut(s)	15, 246
HaeIII	GGCC	1 cut(s)	326
HapII	CCGG	1 cut(s)	48
Hin1II	CATG	2 cut(s)	71, 268
HinfI	GANTC	1 cut(s)	341
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	1 cut(s)	143
Hpy188I	TCNGA	1 cut(s)	175
Hpy8I	GTNNAC	1 cut(s)	143
HpyAV	CCTTC	3 cut(s)	87, 139, 185
HpyCH4V	TGCA	2 cut(s)	17, 332
HpyF3I	CTNAG	1 cut(s)	54
Hsp92II	CATG	2 cut(s)	71, 268
Kzo9I	GATC	1 cut(s)	152
LpnPI	CCDG	7 cut(s)	61, 145, 172, 240, 246, 267, 290
Lsp1109I	GCAGC	1 cut(s)	232
MaeIII	GTNAC	1 cut(s)	308
MalI	GATC	1 cut(s)	154
MboI	GATC	1 cut(s)	152
MboII	GAAGA	3 cut(s)	202, 292, 293
MflI	RGATCY	1 cut(s)	152
MhlI	GDGCHC	1 cut(s)	11
MlsI	TGGCCA	1 cut(s)	326
MluCI	AATT	2 cut(s)	164, 232
MluNI	TGGCCA	1 cut(s)	326
MnlI	CCTC	5 cut(s)	72, 75, 88, 96, 276
Mox20I	TGGCCA	1 cut(s)	326
MscI	TGGCCA	1 cut(s)	326
MseI	TTAA	3 cut(s)	122, 225, 288
MslI	CAYNNNNRTG	1 cut(s)	275
Msp20I	TGGCCA	1 cut(s)	326
MspA1I	CMGCKG	1 cut(s)	245
MspI	CCGG	1 cut(s)	48
MspR9I	CCNGG	2 cut(s)	160, 255
MvaI	CCWGG	2 cut(s)	160, 255
NdeII	GATC	1 cut(s)	152
NlaIII	CATG	2 cut(s)	71, 268
NmuCI	GTSAC	1 cut(s)	308
PfeI	GAWTC	1 cut(s)	341
PflFI	GACNNNGTC	1 cut(s)	297
PinAI	ACCGGT	1 cut(s)	47
PkrI	GCNGC	2 cut(s)	16, 247
Psp124BI	GAGCTC	1 cut(s)	11
Psp6I	CCWGG	2 cut(s)	158, 253
PspGI	CCWGG	2 cut(s)	158, 253
PstI	CTGCAG	1 cut(s)	19
PsuI	RGATCY	1 cut(s)	152
PsyI	GACNNNGTC	1 cut(s)	297
PvuII	CAGCTG	1 cut(s)	245
RsaI	GTAC	1 cut(s)	259
RsaNI	GTAC	1 cut(s)	258
RseI	CAYNNNNRTG	1 cut(s)	275
SacI	GAGCTC	1 cut(s)	11
SaqAI	TTAA	3 cut(s)	122, 225, 288
SatI	GCNGC	2 cut(s)	15, 246
Sau3AI	GATC	1 cut(s)	152
ScrFI	CCNGG	2 cut(s)	160, 255
SduI	GDGCHC	1 cut(s)	11
SetI	ASST	5 cut(s)	11, 122, 131, 196, 247
SfcI	CTRYAG	1 cut(s)	15
SmiMI	CAYNNNNRTG	1 cut(s)	275
Sse9I	AATT	2 cut(s)	164, 232
SstI	GAGCTC	1 cut(s)	11
StyD4I	CCNGG	2 cut(s)	158, 253
TaqI	TCGA	1 cut(s)	88
TasI	AATT	2 cut(s)	164, 232
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	3 cut(s)	122, 225, 288
Tru9I	TTAA	3 cut(s)	122, 225, 288
TseFI	GTSAC	1 cut(s)	308
TseI	GCWGC	2 cut(s)	14, 245
Tsp45I	GTSAC	1 cut(s)	308
Tth111I	GACNNNGTC	1 cut(s)	297
XapI	RAATTY	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.