Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0014838

Physical Location & Seq

Genomic Coordinates Forward (+)

59435667 .. 59457746

Gene Structure 22080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG319300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGTGATTCATGCCATAAAGGAGGGGAGAGAGGGAGAGAGGAAGGAGAACAAGGAGCATATATATATTGAACACTGTAATCTTTGTATGGCTTCTTATGGGACTACAACCGGCGCTGAGTGTCCTCCTCACGCTGTGCCTTCAACTCCTCGAACAGAGGGTGAAATCTTGCTGTTCCCCACCTTAAAGACCTTCTCCTTTAGTGAACTGAAAAGATCTACCAGGAAATTTCATTCTGATAATATGTTGGGAGAAGGTGGTTTTGGTTGTGTCTTCAAGGGTTGGGTTGATGGGAATTCACTAACAGCTGCCAAGCCTGGTACTGGCATGGTCATTGCTGTGAAGAGGCTTAACCGACAAAGTCTTCAGGGTCACAAGGAATGGATGACAGAAATTAACAACCTTGGAAGGCTGCGTCACCCGAATCTTGTGAAATTGATTGGCTATTGCACTGAGGATGATGACCGCCTTTTGGTGTACGAATTTATGCCTTGTGGAAGCTTGAATAATCATCTAGAAAAGTGCAAACAACAAACTGCAAGTGTAAACACACGAGTAGAAAACGTGTTAATTATTGGTCAACATGATGTTACCAACTCTTTCTCCTCCTCAGCTTTCCAAGAGGTCTCTCTGTCTCTGGTTAACTCCTTCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

Helitron_like_N Herpes_Helicase PIF1 REPA_OB_2

Protein Analysis

218

Amino Acids

24.35

Weight (kDa)

7.11

Isoelectric Point (pI)

40.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	77 - 176	7.4e-14	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	79 - 180	1.4e-18	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014838)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g06700
rosa_laevigata	RLG00000027287
rosa_multiflora	Rmu_sc0014291.1_g000006
rosa_rugosa	Rorug01G0336000
rosa_samantha	Rh1AG342400 Rh1BG302800 Rh1BG302900 Rh1CG319100 Rh1CG319300 Rh1DG335200 Rh1DG335400 Rh2AG599800 Rh3AG032400 Rh3BG032700 Rh3CG031500 Rh3DG032300 Rh3DG084100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	466
AcsI	RAATTY	3 cut(s)	227, 295, 482
AcuI	CTGAAG	1 cut(s)	350
AdeI	CACNNNGTG	1 cut(s)	136
AfaI	GTAC	2 cut(s)	322, 479
AfiI	CCNNNNNNNGG	2 cut(s)	323, 472
AflIII	ACRYGT	1 cut(s)	564
AgsI	TTSAA	4 cut(s)	71, 144, 277, 505
AjnI	CCWGG	2 cut(s)	221, 316
AjuI	GAANNNNNNNTTGG	2 cut(s)	246, 278
AluBI	AGCT	3 cut(s)	308, 501, 614
AluI	AGCT	3 cut(s)	308, 501, 614
Alw26I	GTCTC	2 cut(s)	631, 639
ApeKI	GCWGC	2 cut(s)	308, 412
ApoI	RAATTY	3 cut(s)	227, 295, 482
AspLEI	GCGC	1 cut(s)	116
AsuHPI	GGTGA	3 cut(s)	16, 173, 410
BauI	CACGAG	1 cut(s)	552
BbsI	GAAGAC	2 cut(s)	265, 356
BbvCI	CCTCAGC	1 cut(s)	610
BbvI	GCAGC	2 cut(s)	295, 399
BccI	CCATC	1 cut(s)	284
BciT130I	CCWGG	2 cut(s)	223, 318
BcoDI	GTCTC	2 cut(s)	631, 639
BfaI	CTAG	1 cut(s)	515
BfoI	RGCGCY	1 cut(s)	117
BglII	AGATCT	1 cut(s)	215
BisI	GCNGC	2 cut(s)	309, 413
BlsI	GCNGC	2 cut(s)	310, 414
Bme1390I	CCNGG	2 cut(s)	223, 318
BmrFI	CCNGG	2 cut(s)	223, 318
BpiI	GAAGAC	2 cut(s)	265, 356
Bpu10I	CCTNAGC	1 cut(s)	610
BsaI	GGTCTC	1 cut(s)	631
BsaJI	CCNNGG	1 cut(s)	403
BsaXI	ACNNNNNCTCC	2 cut(s)	587, 617
Bsc4I	CCNNNNNNNGG	2 cut(s)	323, 472
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	1 cut(s)	328
Bse3DI	GCAATG	1 cut(s)	333
BseBI	CCWGG	2 cut(s)	223, 318
BseDI	CCNNGG	1 cut(s)	403
BseGI	GGATG	2 cut(s)	390, 463
BseLI	CCNNNNNNNGG	2 cut(s)	323, 472
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	3 cut(s)	108, 444, 624
BseNI	ACTGG	1 cut(s)	328
BseRI	GAGGAG	4 cut(s)	117, 138, 595, 598
BseXI	GCAGC	2 cut(s)	295, 399
BsiSI	CCGG	1 cut(s)	111
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	2 cut(s)	323, 472
BsmAI	GTCTC	2 cut(s)	631, 639
BsmFI	GGGAC	1 cut(s)	115
Bso31I	GGTCTC	1 cut(s)	631
Bsp143I	GATC	1 cut(s)	215
BspACI	CCGC	1 cut(s)	466
BspCNI	CTCAG	3 cut(s)	109, 445, 623
BspTNI	GGTCTC	1 cut(s)	631
BsrDI	GCAATG	1 cut(s)	333
BsrFI	RCCGGY	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	328
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	1 cut(s)	403
BssMI	GATC	1 cut(s)	215
BssSI	CACGAG	1 cut(s)	552
BssT1I	CCWWGG	1 cut(s)	403
Bst2BI	CACGAG	1 cut(s)	552
Bst2UI	CCWGG	2 cut(s)	223, 318
Bst4CI	ACNGT	1 cut(s)	77
Bst6I	CTCTTC	1 cut(s)	338
BstDEI	CTNAG	3 cut(s)	117, 453, 610
BstF5I	GGATG	2 cut(s)	390, 463
BstH2I	RGCGCY	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	1 cut(s)	218
BstMAI	GTCTC	2 cut(s)	631, 639
BstMBI	GATC	1 cut(s)	215
BstNI	CCWGG	2 cut(s)	223, 318
BstSCI	CCNGG	2 cut(s)	221, 316
BstV1I	GCAGC	2 cut(s)	295, 399
BstV2I	GAAGAC	2 cut(s)	265, 356
BstX2I	RGATCY	1 cut(s)	215
BstYI	RGATCY	1 cut(s)	215
BtsCI	GGATG	2 cut(s)	390, 463
BtsIMutI	CAGTG	2 cut(s)	73, 450
CfoI	GCGC	1 cut(s)	116
Cfr10I	RCCGGY	1 cut(s)	110
CseI	GACGC	1 cut(s)	404
Csp6I	GTAC	2 cut(s)	321, 478
CviAII	CATG	3 cut(s)	11, 328, 584
CviJI	RGCY	8 cut(s)	92, 308, 316, 349, 412, 444, 501, 614
CviKI_1	RGCY	8 cut(s)	92, 308, 316, 349, 412, 444, 501, 614
CviQI	GTAC	2 cut(s)	321, 478
DdeI	CTNAG	3 cut(s)	117, 453, 610
DpnI	GATC	1 cut(s)	217
DpnII	GATC	1 cut(s)	215
DraIII	CACNNNGTG	1 cut(s)	136
Eam1104I	CTCTTC	1 cut(s)	338
EarI	CTCTTC	1 cut(s)	338
Eco130I	CCWWGG	1 cut(s)	403
Eco31I	GGTCTC	1 cut(s)	631
Eco57I	CTGAAG	1 cut(s)	350
EcoRI	GAATTC	1 cut(s)	295
EcoRII	CCWGG	2 cut(s)	221, 316
EcoT14I	CCWWGG	1 cut(s)	403
ErhI	CCWWGG	1 cut(s)	403
FaeI	CATG	3 cut(s)	14, 331, 587
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	3 cut(s)	10, 327, 583
Fnu4HI	GCNGC	2 cut(s)	309, 413
FokI	GGATG	2 cut(s)	397, 470
Fsp4HI	GCNGC	2 cut(s)	309, 413
FspBI	CTAG	1 cut(s)	515
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	2 cut(s)	309, 413
HaeII	RGCGCY	1 cut(s)	117
HapII	CCGG	1 cut(s)	111
HgaI	GACGC	1 cut(s)	404
HhaI	GCGC	1 cut(s)	116
Hin1II	CATG	3 cut(s)	14, 331, 587
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HincII	GTYRAC	2 cut(s)	581, 643
HindII	GTYRAC	2 cut(s)	581, 643
HindIII	AAGCTT	1 cut(s)	499
HinfI	GANTC	2 cut(s)	7, 424
HpaI	GTTAAC	1 cut(s)	643
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	3 cut(s)	16, 173, 410
Hpy166II	GTNNAC	5 cut(s)	206, 478, 547, 581, 643
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	1 cut(s)	515
Hpy8I	GTNNAC	5 cut(s)	206, 478, 547, 581, 643
HpyAV	CCTTC	5 cut(s)	37, 150, 202, 248, 402
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4IV	ACGT	1 cut(s)	564
HpyCH4V	TGCA	3 cut(s)	450, 525, 539
HpyF3I	CTNAG	3 cut(s)	117, 453, 610
HpySE526I	ACGT	1 cut(s)	564
Hsp92II	CATG	3 cut(s)	14, 331, 587
HspAI	GCGC	1 cut(s)	114
KspAI	GTTAAC	1 cut(s)	643
Kzo9I	GATC	1 cut(s)	215
LmnI	GCTCC	1 cut(s)	55
LpnPI	CCDG	8 cut(s)	124, 208, 235, 303, 309, 330, 353, 623
Lsp1109I	GCAGC	2 cut(s)	295, 399
MaeI	CTAG	1 cut(s)	515
MaeII	ACGT	1 cut(s)	564
MaeIII	GTNAC	3 cut(s)	371, 416, 589
MalI	GATC	1 cut(s)	217
MboI	GATC	1 cut(s)	215
MboII	GAAGA	3 cut(s)	265, 355, 356
MflI	RGATCY	1 cut(s)	215
MluCI	AATT	6 cut(s)	227, 295, 393, 434, 482, 570
MseI	TTAA	5 cut(s)	185, 351, 396, 569, 642
MslI	CAYNNNNRTG	1 cut(s)	338
MspA1I	CMGCKG	1 cut(s)	308
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	2 cut(s)	223, 318
MvaI	CCWGG	2 cut(s)	223, 318
NdeII	GATC	1 cut(s)	215
NlaIII	CATG	3 cut(s)	14, 331, 587
NmuCI	GTSAC	2 cut(s)	371, 416
PfeI	GAWTC	2 cut(s)	7, 424
PflFI	GACNNNGTC	1 cut(s)	360
PkrI	GCNGC	2 cut(s)	310, 414
Psp6I	CCWGG	2 cut(s)	221, 316
PspGI	CCWGG	2 cut(s)	221, 316
PsuI	RGATCY	1 cut(s)	215
PsyI	GACNNNGTC	1 cut(s)	360
PvuII	CAGCTG	1 cut(s)	308
RsaI	GTAC	2 cut(s)	322, 479
RsaNI	GTAC	2 cut(s)	321, 478
RseI	CAYNNNNRTG	1 cut(s)	338
SaqAI	TTAA	5 cut(s)	185, 351, 396, 569, 642
SatI	GCNGC	2 cut(s)	309, 413
Sau3AI	GATC	1 cut(s)	215
ScrFI	CCNGG	2 cut(s)	223, 318
SetI	ASST	9 cut(s)	185, 194, 259, 310, 405, 503, 567, 616, 627
SmiMI	CAYNNNNRTG	1 cut(s)	338
Sse9I	AATT	6 cut(s)	227, 295, 393, 434, 482, 570
SsiI	CCGC	1 cut(s)	466
SspMI	CTAG	1 cut(s)	515
StyD4I	CCNGG	2 cut(s)	221, 316
StyI	CCWWGG	1 cut(s)	403
TaaI	ACNGT	1 cut(s)	77
TaiI	ACGT	1 cut(s)	567
TaqI	TCGA	1 cut(s)	151
TasI	AATT	6 cut(s)	227, 295, 393, 434, 482, 570
TfiI	GAWTC	2 cut(s)	7, 424
Tru1I	TTAA	5 cut(s)	185, 351, 396, 569, 642
Tru9I	TTAA	5 cut(s)	185, 351, 396, 569, 642
TscAI	CASTG	2 cut(s)	80, 457
TseFI	GTSAC	2 cut(s)	371, 416
TseI	GCWGC	2 cut(s)	308, 412
Tsp45I	GTSAC	2 cut(s)	371, 416
TspDTI	ATGAA	1 cut(s)	221
TspRI	CASTG	2 cut(s)	80, 457
Tth111I	GACNNNGTC	1 cut(s)	360
XapI	RAATTY	3 cut(s)	227, 295, 482
XbaI	TCTAGA	1 cut(s)	514
XspI	CTAG	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.