Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014291.1

Orthogroup ID

OG0014838

Physical Location & Seq

Genomic Coordinates Reverse (-)

37328 .. 38766

Gene Structure 1439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014291.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

atgagtggtgggattcggacaagcgtgaaggggtaccttattgcacaacgggtcactggggcactggaaataaacacagtgcacgagaatgagaatgagaatgagacgagcataaatgtagctagcaattccacagctgctgactctgtggatcatccacctccgctttcagttccagagacttcagcttcatacgggctcaatatctgtgatgggaacattccttgcttttcaatgttgagctctgctgcagagtgtatggcttcttatgggactacaaccggtgctgagtgtcctcctcatgctgtgccttcaactcctcgaacagagggtgaaatcttgctgttccccaccttaaagaccttctcctttagtgaactgaaaagatctaccaggcaatttcgttctgatgatatgttgggacatggtggttttggttgtgtcttcaagggttgggttaatgggaattcactaacagctgccaagcctggtactggcatggtcattgctgtgaagaggcttaaccgacaaagtcttctgggtcacaaggaatggatggtgagtattacttctacgcttcatttgcttgcatgcactttcacaatgtcatataaattacttgttgatttgtttttggcaccccaaacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

216

Amino Acids

23.15

Weight (kDa)

6.29

Isoelectric Point (pI)

45.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014838)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g06700
rosa_laevigata	RLG00000027287
rosa_multiflora	Rmu_sc0014291.1_g000006
rosa_rugosa	Rorug01G0336000
rosa_samantha	Rh1AG342400 Rh1BG302800 Rh1BG302900 Rh1CG319100 Rh1CG319300 Rh1DG335200 Rh1DG335400 Rh2AG599800 Rh3AG032400 Rh3BG032700 Rh3CG031500 Rh3DG032300 Rh3DG084100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	33
AccB1I	GGYRCC	2 cut(s)	33, 637
AciI	CCGC	1 cut(s)	164
AclWI	GGATC	1 cut(s)	159
AcsI	RAATTY	1 cut(s)	466
AcuI	CTGAAG	1 cut(s)	168
AfaI	GTAC	2 cut(s)	35, 493
AfiI	CCNNNNNNNGG	1 cut(s)	494
AgeI	ACCGGT	1 cut(s)	281
AgsI	TTSAA	3 cut(s)	234, 315, 448
AjnI	CCWGG	2 cut(s)	392, 487
AluBI	AGCT	5 cut(s)	122, 137, 188, 243, 479
AluI	AGCT	5 cut(s)	122, 137, 188, 243, 479
Alw21I	GWGCWC	2 cut(s)	84, 245
Alw26I	GTCTC	2 cut(s)	98, 173
Alw44I	GTGCAC	1 cut(s)	80
AlwI	GGATC	1 cut(s)	159
AlwNI	CAGNNNCTG	1 cut(s)	140
ApaLI	GTGCAC	1 cut(s)	80
ApeKI	GCWGC	3 cut(s)	137, 248, 479
ApoI	RAATTY	1 cut(s)	466
AsiGI	ACCGGT	1 cut(s)	281
Asp718I	GGTACC	1 cut(s)	33
AsuHPI	GGTGA	2 cut(s)	344, 571
AsuNHI	GCTAGC	1 cut(s)	122
BaeGI	GKGCMC	2 cut(s)	64, 84
BanI	GGYRCC	2 cut(s)	33, 637
BanII	GRGCYC	2 cut(s)	201, 245
BauI	CACGAG	1 cut(s)	83
BbsI	GAAGAC	2 cut(s)	436, 527
Bbv12I	GWGCWC	2 cut(s)	84, 245
BbvI	GCAGC	3 cut(s)	124, 235, 466
BccI	CCATC	2 cut(s)	206, 550
BciT130I	CCWGG	2 cut(s)	394, 489
BcoDI	GTCTC	2 cut(s)	98, 173
BfaI	CTAG	1 cut(s)	123
BfmI	CTRYAG	1 cut(s)	249
BglII	AGATCT	1 cut(s)	386
BisI	GCNGC	3 cut(s)	138, 249, 480
BlsI	GCNGC	3 cut(s)	139, 250, 481
Bme1390I	CCNGG	2 cut(s)	394, 489
BmiI	GGNNCC	2 cut(s)	35, 639
BmrFI	CCNGG	2 cut(s)	394, 489
BmrI	ACTGGG	1 cut(s)	66
BmtI	GCTAGC	1 cut(s)	126
BmuI	ACTGGG	1 cut(s)	66
BpiI	GAAGAC	2 cut(s)	436, 527
BsaWI	WCCGGW	1 cut(s)	281
Bsc4I	CCNNNNNNNGG	1 cut(s)	494
Bse118I	RCCGGY	1 cut(s)	281
Bse1I	ACTGG	3 cut(s)	61, 69, 499
Bse3DI	GCAATG	1 cut(s)	504
BseBI	CCWGG	2 cut(s)	394, 489
BseGI	GGATG	2 cut(s)	154, 561
BseLI	CCNNNNNNNGG	1 cut(s)	494
BseMI	GCAATG	1 cut(s)	504
BseMII	CTCAG	1 cut(s)	279
BseNI	ACTGG	3 cut(s)	61, 69, 499
BseRI	GAGGAG	2 cut(s)	288, 309
BseSI	GKGCMC	2 cut(s)	64, 84
BseXI	GCAGC	3 cut(s)	124, 235, 466
BshNI	GGYRCC	2 cut(s)	33, 637
BshTI	ACCGGT	1 cut(s)	281
BsiHKAI	GWGCWC	2 cut(s)	84, 245
BsiSI	CCGG	1 cut(s)	282
BslFI	GGGAC	2 cut(s)	286, 435
BslI	CCNNNNNNNGG	1 cut(s)	494
BsmAI	GTCTC	2 cut(s)	98, 173
BsmBI	CGTCTC	1 cut(s)	98
BsmFI	GGGAC	2 cut(s)	286, 435
Bsp1286I	GDGCHC	4 cut(s)	64, 84, 201, 245
Bsp143I	GATC	2 cut(s)	151, 386
BspACI	CCGC	1 cut(s)	164
BspCNI	CTCAG	1 cut(s)	280
BspLI	GGNNCC	2 cut(s)	35, 639
BspMAI	CTGCAG	1 cut(s)	253
BspOI	GCTAGC	1 cut(s)	126
BspPI	GGATC	1 cut(s)	159
BspT107I	GGYRCC	2 cut(s)	33, 637
BsrDI	GCAATG	1 cut(s)	504
BsrFI	RCCGGY	1 cut(s)	281
BsrI	ACTGG	3 cut(s)	61, 69, 499
BssAI	RCCGGY	1 cut(s)	281
BssMI	GATC	2 cut(s)	151, 386
BssSI	CACGAG	1 cut(s)	83
Bst2BI	CACGAG	1 cut(s)	83
Bst2UI	CCWGG	2 cut(s)	394, 489
Bst4CI	ACNGT	1 cut(s)	79
Bst6I	CTCTTC	1 cut(s)	509
BstC8I	GCNNGC	3 cut(s)	124, 588, 592
BstDEI	CTNAG	1 cut(s)	288
BstF5I	GGATG	2 cut(s)	154, 561
BstKTI	GATC	2 cut(s)	154, 389
BstMAI	GTCTC	2 cut(s)	98, 173
BstMBI	GATC	2 cut(s)	151, 386
BstMWI	GCNNNNNNNGC	1 cut(s)	583
BstNI	CCWGG	2 cut(s)	394, 489
BstNSI	RCATGY	1 cut(s)	594
BstSCI	CCNGG	2 cut(s)	392, 487
BstSFI	CTRYAG	1 cut(s)	249
BstSLI	GKGCMC	2 cut(s)	64, 84
BstV1I	GCAGC	3 cut(s)	124, 235, 466
BstV2I	GAAGAC	2 cut(s)	436, 527
BstX2I	RGATCY	1 cut(s)	386
BstYI	RGATCY	1 cut(s)	386
BtsCI	GGATG	2 cut(s)	154, 561
BtsIMutI	CAGTG	3 cut(s)	54, 62, 84
Cac8I	GCNNGC	3 cut(s)	124, 588, 592
CaiI	CAGNNNCTG	1 cut(s)	140
Cfr10I	RCCGGY	1 cut(s)	281
Csp6I	GTAC	2 cut(s)	34, 492
CspAI	ACCGGT	1 cut(s)	281
CviAII	CATG	4 cut(s)	302, 425, 499, 591
CviJI	RGCY	9 cut(s)	122, 137, 188, 199, 243, 263, 479, 487, 520
CviKI_1	RGCY	9 cut(s)	122, 137, 188, 199, 243, 263, 479, 487, 520
CviQI	GTAC	2 cut(s)	34, 492
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	2 cut(s)	153, 388
DpnII	GATC	2 cut(s)	151, 386
Eam1104I	CTCTTC	1 cut(s)	509
EarI	CTCTTC	1 cut(s)	509
Ecl136II	GAGCTC	1 cut(s)	243
Eco24I	GRGCYC	2 cut(s)	201, 245
Eco53kI	GAGCTC	1 cut(s)	243
Eco57I	CTGAAG	1 cut(s)	168
EcoICRI	GAGCTC	1 cut(s)	243
EcoRI	GAATTC	1 cut(s)	466
EcoRII	CCWGG	2 cut(s)	392, 487
EcoT38I	GRGCYC	2 cut(s)	201, 245
Esp3I	CGTCTC	1 cut(s)	98
FaeI	CATG	4 cut(s)	305, 428, 502, 594
FaqI	GGGAC	2 cut(s)	286, 435
FatI	CATG	4 cut(s)	301, 424, 498, 590
Fnu4HI	GCNGC	3 cut(s)	138, 249, 480
FokI	GGATG	2 cut(s)	141, 568
FriOI	GRGCYC	2 cut(s)	201, 245
Fsp4HI	GCNGC	3 cut(s)	138, 249, 480
FspBI	CTAG	1 cut(s)	123
GluI	GCNGC	3 cut(s)	138, 249, 480
HapII	CCGG	1 cut(s)	282
Hin1II	CATG	4 cut(s)	305, 428, 502, 594
HinfI	GANTC	2 cut(s)	13, 143
HpaII	CCGG	1 cut(s)	282
HphI	GGTGA	2 cut(s)	344, 571
Hpy166II	GTNNAC	2 cut(s)	82, 377
Hpy188I	TCNGA	2 cut(s)	18, 409
Hpy188III	TCNNGA	1 cut(s)	176
Hpy8I	GTNNAC	2 cut(s)	82, 377
HpyAV	CCTTC	3 cut(s)	22, 321, 373
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4V	TGCA	5 cut(s)	44, 82, 251, 590, 594
HpyF10VI	GCNNNNNNNGC	1 cut(s)	583
HpyF3I	CTNAG	1 cut(s)	288
Hsp92II	CATG	4 cut(s)	305, 428, 502, 594
KpnI	GGTACC	1 cut(s)	37
Kzo9I	GATC	2 cut(s)	151, 386
Lsp1109I	GCAGC	3 cut(s)	124, 235, 466
MaeI	CTAG	1 cut(s)	123
MaeIII	GTNAC	2 cut(s)	52, 542
MalI	GATC	2 cut(s)	153, 388
MboI	GATC	2 cut(s)	151, 386
MboII	GAAGA	3 cut(s)	436, 526, 527
MflI	RGATCY	1 cut(s)	386
MhlI	GDGCHC	4 cut(s)	64, 84, 201, 245
MluCI	AATT	4 cut(s)	127, 398, 466, 614
MlyI	GAGTC	1 cut(s)	137
MnlI	CCTC	6 cut(s)	171, 306, 309, 322, 330, 510
MseI	TTAA	3 cut(s)	356, 459, 522
MslI	CAYNNNNRTG	2 cut(s)	87, 509
MspA1I	CMGCKG	2 cut(s)	137, 479
MspI	CCGG	1 cut(s)	282
MspR9I	CCNGG	2 cut(s)	394, 489
MvaI	CCWGG	2 cut(s)	394, 489
MwoI	GCNNNNNNNGC	1 cut(s)	583
NdeII	GATC	2 cut(s)	151, 386
NheI	GCTAGC	1 cut(s)	122
NlaIII	CATG	4 cut(s)	305, 428, 502, 594
NlaIV	GGNNCC	2 cut(s)	35, 639
NmuCI	GTSAC	2 cut(s)	52, 542
NspI	RCATGY	1 cut(s)	594
PaeI	GCATGC	1 cut(s)	594
PfeI	GAWTC	1 cut(s)	13
PflFI	GACNNNGTC	1 cut(s)	531
PinAI	ACCGGT	1 cut(s)	281
PkrI	GCNGC	3 cut(s)	139, 250, 481
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
Psp124BI	GAGCTC	1 cut(s)	245
Psp6I	CCWGG	2 cut(s)	392, 487
PspGI	CCWGG	2 cut(s)	392, 487
PspN4I	GGNNCC	2 cut(s)	35, 639
PstI	CTGCAG	1 cut(s)	253
PstNI	CAGNNNCTG	1 cut(s)	140
PsuI	RGATCY	1 cut(s)	386
PsyI	GACNNNGTC	1 cut(s)	531
PvuII	CAGCTG	2 cut(s)	137, 479
RsaI	GTAC	2 cut(s)	35, 493
RsaNI	GTAC	2 cut(s)	34, 492
RseI	CAYNNNNRTG	2 cut(s)	87, 509
SacI	GAGCTC	1 cut(s)	245
SaqAI	TTAA	3 cut(s)	356, 459, 522
SatI	GCNGC	3 cut(s)	138, 249, 480
Sau3AI	GATC	2 cut(s)	151, 386
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	2 cut(s)	394, 489
SduI	GDGCHC	4 cut(s)	64, 84, 201, 245
SetI	ASST	9 cut(s)	39, 124, 139, 163, 190, 245, 356, 365, 481
SfcI	CTRYAG	1 cut(s)	249
SmiMI	CAYNNNNRTG	2 cut(s)	87, 509
SphI	GCATGC	1 cut(s)	594
Sse9I	AATT	4 cut(s)	127, 398, 466, 614
SsiI	CCGC	1 cut(s)	164
SspMI	CTAG	1 cut(s)	123
SstI	GAGCTC	1 cut(s)	245
StyD4I	CCNGG	2 cut(s)	392, 487
TaaI	ACNGT	1 cut(s)	79
TaqI	TCGA	1 cut(s)	322
TasI	AATT	4 cut(s)	127, 398, 466, 614
TfiI	GAWTC	1 cut(s)	13
Tru1I	TTAA	3 cut(s)	356, 459, 522
Tru9I	TTAA	3 cut(s)	356, 459, 522
TscAI	CASTG	3 cut(s)	61, 69, 84
TseFI	GTSAC	2 cut(s)	52, 542
TseI	GCWGC	3 cut(s)	137, 248, 479
Tsp45I	GTSAC	2 cut(s)	52, 542
TspDTI	ATGAA	2 cut(s)	180, 569
TspRI	CASTG	3 cut(s)	61, 69, 84
Tth111I	GACNNNGTC	1 cut(s)	531
VneI	GTGCAC	1 cut(s)	80
XapI	RAATTY	1 cut(s)	466
XceI	RCATGY	1 cut(s)	594
XspI	CTAG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.