Rh3BG032700
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0014838
Physical Location & Seq
Forward (+)
2178607 .. 2191267
12661 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG032700.1

Sequence Viewer

Length: 486 bp
ATGACGGTGAATTCCACTAATGCAGACCTGCATGTGTCATCTGTCTCAGTGCCTTCAACTCCTCGGACAGAGGTTGAGATCTTGCTAAAGAGCTTCTTTTTTAATGAACTGAAAACCGCCACCAGGAACTTTCGGCCTGATAATGTGGTGGGTGAGGGTGGTTTTGGTACTATCTTTAAGGGGTGGATTGATCAGAATTCATTAGCAGCTGCCAAGCCTGGTAAAGGAACGACTGTTGCTATAAAGAGGCTTAACCAAGAAAGTTATCAGGGTCGAGAGGAATGGTTTAGAGCAGGCATTGTGGAGACTGGAGAGGGCCCTCAATTGCCAGGTCTTGTTCCTAGCACGGCATTGGCTTCAATGAAGCTAGGCAGGACAGTAGGTGGCGGATGTGGCTTGAGTGAGGAAGGTGGTGGTGAAACTGCGGTGGAGCGACGGCGGTGGTGGTACGCAGGAGATGCGGACGGGACGATGACGGGCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

161

Amino Acids

17.18

Weight (kDa)

5.89

Isoelectric Point (pI)

33.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 36
AciI CCGC 5 cut(s) 117, 387, 425, 439, 461
AcsI RAATTY 2 cut(s) 10, 196
AfaI GTAC 2 cut(s) 169, 449
AfiI CCNNNNNNNGG 2 cut(s) 123, 224
AgsI TTSAA 2 cut(s) 57, 360
AjnI CCWGG 3 cut(s) 122, 217, 328
AluBI AGCT 3 cut(s) 93, 209, 367
AluI AGCT 3 cut(s) 93, 209, 367
Alw26I GTCTC 2 cut(s) 49, 299
AoxI GGCC 2 cut(s) 134, 316
ApaI GGGCCC 1 cut(s) 320
ApeKI GCWGC 2 cut(s) 206, 209
ApoI RAATTY 2 cut(s) 10, 196
AspS9I GGNCC 2 cut(s) 316, 317
AsuHPI GGTGA 3 cut(s) 19, 164, 428
BaeGI GKGCMC 1 cut(s) 320
BanII GRGCYC 1 cut(s) 320
BbvI GCAGC 2 cut(s) 196, 218
BceAI ACGGC 2 cut(s) 363, 452
BciT130I CCWGG 3 cut(s) 124, 219, 330
BclI TGATCA 1 cut(s) 190
BcoDI GTCTC 2 cut(s) 49, 299
BfaI CTAG 2 cut(s) 342, 368
BfuAI ACCTGC 1 cut(s) 36
BglII AGATCT 1 cut(s) 78
BisI GCNGC 2 cut(s) 207, 210
BlsI GCNGC 2 cut(s) 208, 211
Bme1390I CCNGG 3 cut(s) 124, 219, 330
BmgT120I GGNCC 2 cut(s) 316, 317
BmiI GGNNCC 1 cut(s) 318
BmrFI CCNGG 3 cut(s) 124, 219, 330
BmsI GCATC 1 cut(s) 448
BpmI CTGGAG 1 cut(s) 330
BpuEI CTTGAG 1 cut(s) 418
BsaJI CCNNGG 1 cut(s) 62
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 224
Bse1I ACTGG 1 cut(s) 313
BseBI CCWGG 3 cut(s) 124, 219, 330
BseDI CCNNGG 1 cut(s) 62
BseGI GGATG 1 cut(s) 395
BseLI CCNNNNNNNGG 2 cut(s) 123, 224
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 313
BseRI GAGGAG 1 cut(s) 51
BseSI GKGCMC 1 cut(s) 320
BseXI GCAGC 2 cut(s) 196, 218
BshFI GGCC 2 cut(s) 136, 318
BslFI GGGAC 1 cut(s) 481
BslI CCNNNNNNNGG 2 cut(s) 123, 224
BsmAI GTCTC 2 cut(s) 49, 299
BsmFI GGGAC 1 cut(s) 481
BsnI GGCC 2 cut(s) 136, 318
Bsp120I GGGCCC 1 cut(s) 316
Bsp1286I GDGCHC 1 cut(s) 320
Bsp143I GATC 2 cut(s) 78, 190
BspACI CCGC 5 cut(s) 117, 387, 425, 439, 461
BspANI GGCC 2 cut(s) 136, 318
BspCNI CTCAG 1 cut(s) 59
BspLI GGNNCC 1 cut(s) 318
BspMI ACCTGC 1 cut(s) 36
BsrI ACTGG 1 cut(s) 313
BssECI CCNNGG 1 cut(s) 62
BssMI GATC 2 cut(s) 78, 190
Bst2UI CCWGG 3 cut(s) 124, 219, 330
Bst4CI ACNGT 3 cut(s) 7, 235, 379
BstAPI GCANNNNNTGC 1 cut(s) 458
BstC8I GCNNGC 1 cut(s) 295
BstDEI CTNAG 1 cut(s) 46
BstENI CCTNNNNNAGG 1 cut(s) 222
BstF5I GGATG 1 cut(s) 395
BstKTI GATC 2 cut(s) 81, 193
BstMAI GTCTC 2 cut(s) 49, 299
BstMBI GATC 2 cut(s) 78, 190
BstMWI GCNNNNNNNGC 2 cut(s) 393, 458
BstNI CCWGG 3 cut(s) 124, 219, 330
BstNSI RCATGY 1 cut(s) 35
BstSCI CCNGG 3 cut(s) 122, 217, 328
BstSLI GKGCMC 1 cut(s) 320
BstV1I GCAGC 2 cut(s) 196, 218
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
BsuRI GGCC 2 cut(s) 136, 318
BtsCI GGATG 1 cut(s) 395
BtsIMutI CAGTG 1 cut(s) 54
BveI ACCTGC 1 cut(s) 36
Cac8I GCNNGC 1 cut(s) 295
Cfr13I GGNCC 2 cut(s) 316, 317
Csp6I GTAC 2 cut(s) 168, 448
CviAII CATG 1 cut(s) 32
CviJI RGCY 9 cut(s) 93, 136, 209, 217, 250, 318, 356, 367, 396
CviKI_1 RGCY 9 cut(s) 93, 136, 209, 217, 250, 318, 356, 367, 396
CviQI GTAC 2 cut(s) 168, 448
DdeI CTNAG 1 cut(s) 46
DpnI GATC 2 cut(s) 80, 192
DpnII GATC 2 cut(s) 78, 190
EciI GGCGGA 1 cut(s) 402
Eco24I GRGCYC 1 cut(s) 320
EcoNI CCTNNNNNAGG 1 cut(s) 222
EcoO109I RGGNCCY 2 cut(s) 316, 317
EcoRI GAATTC 2 cut(s) 10, 196
EcoRII CCWGG 3 cut(s) 122, 217, 328
EcoT38I GRGCYC 1 cut(s) 320
FaeI CATG 1 cut(s) 35
FaiI YATR 2 cut(s) 33, 242
FalI AAGNNNNNCTT 2 cut(s) 80, 112
FaqI GGGAC 1 cut(s) 481
FatI CATG 1 cut(s) 31
FbaI TGATCA 1 cut(s) 190
Fnu4HI GCNGC 2 cut(s) 207, 210
FokI GGATG 1 cut(s) 402
FriOI GRGCYC 1 cut(s) 320
Fsp4HI GCNGC 2 cut(s) 207, 210
FspBI CTAG 2 cut(s) 342, 368
GluI GCNGC 2 cut(s) 207, 210
GsuI CTGGAG 1 cut(s) 330
HaeIII GGCC 2 cut(s) 136, 318
Hin1II CATG 1 cut(s) 35
HphI GGTGA 3 cut(s) 19, 164, 428
Hpy188I TCNGA 2 cut(s) 66, 195
Hpy188III TCNNGA 1 cut(s) 275
Hpy99I CGWCG 1 cut(s) 438
HpyAV CCTTC 2 cut(s) 63, 401
HpyCH4III ACNGT 3 cut(s) 7, 235, 379
HpyCH4V TGCA 2 cut(s) 23, 31
HpyF10VI GCNNNNNNNGC 2 cut(s) 393, 458
HpyF3I CTNAG 1 cut(s) 46
Hsp92II CATG 1 cut(s) 35
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 2 cut(s) 78, 190
LmnI GCTCC 1 cut(s) 430
Lsp1109I GCAGC 2 cut(s) 196, 218
LweI GCATC 1 cut(s) 448
MaeI CTAG 2 cut(s) 342, 368
MalI GATC 2 cut(s) 80, 192
MboI GATC 2 cut(s) 78, 190
MfeI CAATTG 1 cut(s) 323
MflI RGATCY 1 cut(s) 78
MhlI GDGCHC 1 cut(s) 320
MluCI AATT 3 cut(s) 10, 196, 323
MnlI CCTC 8 cut(s) 64, 72, 148, 240, 271, 307, 330, 397
MseI TTAA 4 cut(s) 102, 177, 252, 484
MspA1I CMGCKG 1 cut(s) 209
MspR9I CCNGG 3 cut(s) 124, 219, 330
MunI CAATTG 1 cut(s) 323
MvaI CCWGG 3 cut(s) 124, 219, 330
MwoI GCNNNNNNNGC 2 cut(s) 393, 458
NdeII GATC 2 cut(s) 78, 190
NlaIII CATG 1 cut(s) 35
NlaIV GGNNCC 1 cut(s) 318
NspI RCATGY 1 cut(s) 35
PkrI GCNGC 2 cut(s) 208, 211
Psp6I CCWGG 3 cut(s) 122, 217, 328
PspGI CCWGG 3 cut(s) 122, 217, 328
PspN4I GGNNCC 1 cut(s) 318
PspOMI GGGCCC 1 cut(s) 316
PspPI GGNCC 2 cut(s) 316, 317
PsuI RGATCY 1 cut(s) 78
PvuII CAGCTG 1 cut(s) 209
RsaI GTAC 2 cut(s) 169, 449
RsaNI GTAC 2 cut(s) 168, 448
SaqAI TTAA 4 cut(s) 102, 177, 252, 484
SatI GCNGC 2 cut(s) 207, 210
Sau3AI GATC 2 cut(s) 78, 190
Sau96I GGNCC 2 cut(s) 316, 317
ScrFI CCNGG 3 cut(s) 124, 219, 330
SduI GDGCHC 1 cut(s) 320
SetI ASST 8 cut(s) 30, 75, 95, 211, 334, 369, 385, 412
SfaNI GCATC 1 cut(s) 448
SmlI CTYRAG 1 cut(s) 397
SmoI CTYRAG 1 cut(s) 397
Sse9I AATT 3 cut(s) 10, 196, 323
SsiI CCGC 5 cut(s) 117, 387, 425, 439, 461
SspMI CTAG 2 cut(s) 342, 368
StyD4I CCNGG 3 cut(s) 122, 217, 328
TaaI ACNGT 3 cut(s) 7, 235, 379
TaqI TCGA 1 cut(s) 274
TasI AATT 3 cut(s) 10, 196, 323
Tru1I TTAA 4 cut(s) 102, 177, 252, 484
Tru9I TTAA 4 cut(s) 102, 177, 252, 484
TscAI CASTG 1 cut(s) 54
TseI GCWGC 2 cut(s) 206, 209
TspDTI ATGAA 3 cut(s) 120, 189, 377
TspRI CASTG 1 cut(s) 54
XagI CCTNNNNNAGG 1 cut(s) 222
XapI RAATTY 2 cut(s) 10, 196
XceI RCATGY 1 cut(s) 35
XspI CTAG 2 cut(s) 342, 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.