Rh1BG302900

Belongs to the helicase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0014838
Physical Location & Seq
Forward (+)
43949705 .. 43957734
8030 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG302900.1

Sequence Viewer

Length: 564 bp
ATGGCTTCTTATGGGACTACAACCGGCGCTGAGTGTCCTCCTCACGCTGTGCCTTCAACTCCTCGAACAGAGGGTGAAATCTTGCTGTTCCCCACCTTAAAGACCTTCTCCTTTAGTGAACTGAAAAGATCTACCAGGAAATTTCATTCTGATAATATGTTGGGAGAAGGTGGTTTTGGTTGTGTCTTCAAGGGTTGGGTTGATGGGAATTCACTAACAGCTGCCAAGCCTGGTACTGGCATGGTCATTGCTGTGAAGAGGCTTAACCGACAAAGTCTTCAGGGTCACAAGGAATGGATGACAGAAATTAACAACCTTGGAAGGCTGCGTCACCCGAATCTTGTGAAATTGATTGGCTATTGCACTGAGGATGATGACCGCCTTTTGGTGTACGAATTTATGCCTTGTGGAAGCTTGAATAATCATCTAGAAAAGTGCAAACAACAAACTGCAAGTGTAAACACACGAGTAGAAAACGTGTTAATTATTGGTCAACATGATGTTACCAACTCTTTCTCCTCCTCAGCTTTCCAAGAGGTCTCTCTGTCTCTGGTTAACTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460
Pfam Domains
Protein Families
Helitron_like_N Herpes_Helicase PIF1 REPA_OB_2

Protein Analysis

187

Amino Acids

20.64

Weight (kDa)

7.69

Isoelectric Point (pI)

39.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 48 - 147 5e-14 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 50 - 151 9.3e-19 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 379
AcsI RAATTY 3 cut(s) 140, 208, 395
AcuI CTGAAG 1 cut(s) 263
AdeI CACNNNGTG 1 cut(s) 49
AfaI GTAC 2 cut(s) 235, 392
AfiI CCNNNNNNNGG 2 cut(s) 236, 385
AflIII ACRYGT 1 cut(s) 477
AgsI TTSAA 3 cut(s) 57, 190, 418
AjnI CCWGG 2 cut(s) 134, 229
AjuI GAANNNNNNNTTGG 2 cut(s) 159, 191
AluBI AGCT 3 cut(s) 221, 414, 527
AluI AGCT 3 cut(s) 221, 414, 527
Alw26I GTCTC 2 cut(s) 544, 552
ApeKI GCWGC 2 cut(s) 221, 325
ApoI RAATTY 3 cut(s) 140, 208, 395
AspLEI GCGC 1 cut(s) 29
AsuHPI GGTGA 2 cut(s) 86, 323
BauI CACGAG 1 cut(s) 465
BbsI GAAGAC 2 cut(s) 178, 269
BbvCI CCTCAGC 1 cut(s) 523
BbvI GCAGC 2 cut(s) 208, 312
BccI CCATC 1 cut(s) 197
BciT130I CCWGG 2 cut(s) 136, 231
BcoDI GTCTC 2 cut(s) 544, 552
BfaI CTAG 1 cut(s) 428
BfoI RGCGCY 1 cut(s) 30
BglII AGATCT 1 cut(s) 128
BisI GCNGC 2 cut(s) 222, 326
BlsI GCNGC 2 cut(s) 223, 327
Bme1390I CCNGG 2 cut(s) 136, 231
BmrFI CCNGG 2 cut(s) 136, 231
BpiI GAAGAC 2 cut(s) 178, 269
Bpu10I CCTNAGC 1 cut(s) 523
BsaI GGTCTC 1 cut(s) 544
BsaJI CCNNGG 1 cut(s) 316
BsaXI ACNNNNNCTCC 2 cut(s) 500, 530
Bsc4I CCNNNNNNNGG 2 cut(s) 236, 385
Bse118I RCCGGY 1 cut(s) 23
Bse1I ACTGG 1 cut(s) 241
Bse3DI GCAATG 1 cut(s) 246
BseBI CCWGG 2 cut(s) 136, 231
BseDI CCNNGG 1 cut(s) 316
BseGI GGATG 2 cut(s) 303, 376
BseLI CCNNNNNNNGG 2 cut(s) 236, 385
BseMI GCAATG 1 cut(s) 246
BseMII CTCAG 3 cut(s) 21, 357, 537
BseNI ACTGG 1 cut(s) 241
BseRI GAGGAG 4 cut(s) 30, 51, 508, 511
BseXI GCAGC 2 cut(s) 208, 312
BsiSI CCGG 1 cut(s) 24
BslFI GGGAC 1 cut(s) 28
BslI CCNNNNNNNGG 2 cut(s) 236, 385
BsmAI GTCTC 2 cut(s) 544, 552
BsmFI GGGAC 1 cut(s) 28
Bso31I GGTCTC 1 cut(s) 544
Bsp143I GATC 1 cut(s) 128
BspACI CCGC 1 cut(s) 379
BspCNI CTCAG 3 cut(s) 22, 358, 536
BspTNI GGTCTC 1 cut(s) 544
BsrDI GCAATG 1 cut(s) 246
BsrFI RCCGGY 1 cut(s) 23
BsrI ACTGG 1 cut(s) 241
BssAI RCCGGY 1 cut(s) 23
BssECI CCNNGG 1 cut(s) 316
BssMI GATC 1 cut(s) 128
BssSI CACGAG 1 cut(s) 465
BssT1I CCWWGG 1 cut(s) 316
Bst2BI CACGAG 1 cut(s) 465
Bst2UI CCWGG 2 cut(s) 136, 231
Bst6I CTCTTC 1 cut(s) 251
BstDEI CTNAG 3 cut(s) 30, 366, 523
BstF5I GGATG 2 cut(s) 303, 376
BstH2I RGCGCY 1 cut(s) 30
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 1 cut(s) 131
BstMAI GTCTC 2 cut(s) 544, 552
BstMBI GATC 1 cut(s) 128
BstNI CCWGG 2 cut(s) 136, 231
BstSCI CCNGG 2 cut(s) 134, 229
BstV1I GCAGC 2 cut(s) 208, 312
BstV2I GAAGAC 2 cut(s) 178, 269
BstX2I RGATCY 1 cut(s) 128
BstYI RGATCY 1 cut(s) 128
BtsCI GGATG 2 cut(s) 303, 376
BtsIMutI CAGTG 1 cut(s) 363
CfoI GCGC 1 cut(s) 29
Cfr10I RCCGGY 1 cut(s) 23
CseI GACGC 1 cut(s) 317
Csp6I GTAC 2 cut(s) 234, 391
CviAII CATG 2 cut(s) 241, 497
CviJI RGCY 8 cut(s) 5, 221, 229, 262, 325, 357, 414, 527
CviKI_1 RGCY 8 cut(s) 5, 221, 229, 262, 325, 357, 414, 527
CviQI GTAC 2 cut(s) 234, 391
DdeI CTNAG 3 cut(s) 30, 366, 523
DpnI GATC 1 cut(s) 130
DpnII GATC 1 cut(s) 128
DraIII CACNNNGTG 1 cut(s) 49
Eam1104I CTCTTC 1 cut(s) 251
EarI CTCTTC 1 cut(s) 251
Eco130I CCWWGG 1 cut(s) 316
Eco31I GGTCTC 1 cut(s) 544
Eco57I CTGAAG 1 cut(s) 263
EcoRI GAATTC 1 cut(s) 208
EcoRII CCWGG 2 cut(s) 134, 229
EcoT14I CCWWGG 1 cut(s) 316
ErhI CCWWGG 1 cut(s) 316
FaeI CATG 2 cut(s) 244, 500
FaiI YATR 5 cut(s) 12, 158, 242, 401, 498
FaqI GGGAC 1 cut(s) 28
FatI CATG 2 cut(s) 240, 496
Fnu4HI GCNGC 2 cut(s) 222, 326
FokI GGATG 2 cut(s) 310, 383
Fsp4HI GCNGC 2 cut(s) 222, 326
FspBI CTAG 1 cut(s) 428
GlaI GCGC 1 cut(s) 28
GluI GCNGC 2 cut(s) 222, 326
HaeII RGCGCY 1 cut(s) 30
HapII CCGG 1 cut(s) 24
HgaI GACGC 1 cut(s) 317
HhaI GCGC 1 cut(s) 29
Hin1II CATG 2 cut(s) 244, 500
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HincII GTYRAC 2 cut(s) 494, 556
HindII GTYRAC 2 cut(s) 494, 556
HindIII AAGCTT 1 cut(s) 412
HinfI GANTC 1 cut(s) 337
HpaI GTTAAC 1 cut(s) 556
HpaII CCGG 1 cut(s) 24
HphI GGTGA 2 cut(s) 86, 323
Hpy166II GTNNAC 5 cut(s) 119, 391, 460, 494, 556
Hpy188I TCNGA 1 cut(s) 151
Hpy188III TCNNGA 1 cut(s) 428
Hpy8I GTNNAC 5 cut(s) 119, 391, 460, 494, 556
HpyAV CCTTC 4 cut(s) 63, 115, 161, 315
HpyCH4IV ACGT 1 cut(s) 477
HpyCH4V TGCA 3 cut(s) 363, 438, 452
HpyF3I CTNAG 3 cut(s) 30, 366, 523
HpySE526I ACGT 1 cut(s) 477
Hsp92II CATG 2 cut(s) 244, 500
HspAI GCGC 1 cut(s) 27
KspAI GTTAAC 1 cut(s) 556
Kzo9I GATC 1 cut(s) 128
LpnPI CCDG 8 cut(s) 37, 121, 148, 216, 222, 243, 266, 536
Lsp1109I GCAGC 2 cut(s) 208, 312
MaeI CTAG 1 cut(s) 428
MaeII ACGT 1 cut(s) 477
MaeIII GTNAC 3 cut(s) 284, 329, 502
MalI GATC 1 cut(s) 130
MboI GATC 1 cut(s) 128
MboII GAAGA 3 cut(s) 178, 268, 269
MflI RGATCY 1 cut(s) 128
MluCI AATT 6 cut(s) 140, 208, 306, 347, 395, 483
MnlI CCTC 9 cut(s) 48, 51, 64, 72, 252, 361, 529, 529, 532
MseI TTAA 5 cut(s) 98, 264, 309, 482, 555
MslI CAYNNNNRTG 1 cut(s) 251
MspA1I CMGCKG 1 cut(s) 221
MspI CCGG 1 cut(s) 24
MspR9I CCNGG 2 cut(s) 136, 231
MvaI CCWGG 2 cut(s) 136, 231
NdeII GATC 1 cut(s) 128
NlaIII CATG 2 cut(s) 244, 500
NmuCI GTSAC 2 cut(s) 284, 329
PfeI GAWTC 1 cut(s) 337
PflFI GACNNNGTC 1 cut(s) 273
PkrI GCNGC 2 cut(s) 223, 327
Psp6I CCWGG 2 cut(s) 134, 229
PspGI CCWGG 2 cut(s) 134, 229
PsuI RGATCY 1 cut(s) 128
PsyI GACNNNGTC 1 cut(s) 273
PvuII CAGCTG 1 cut(s) 221
RsaI GTAC 2 cut(s) 235, 392
RsaNI GTAC 2 cut(s) 234, 391
RseI CAYNNNNRTG 1 cut(s) 251
SaqAI TTAA 5 cut(s) 98, 264, 309, 482, 555
SatI GCNGC 2 cut(s) 222, 326
Sau3AI GATC 1 cut(s) 128
ScrFI CCNGG 2 cut(s) 136, 231
SetI ASST 9 cut(s) 98, 107, 172, 223, 318, 416, 480, 529, 540
SmiMI CAYNNNNRTG 1 cut(s) 251
Sse9I AATT 6 cut(s) 140, 208, 306, 347, 395, 483
SsiI CCGC 1 cut(s) 379
SspMI CTAG 1 cut(s) 428
StyD4I CCNGG 2 cut(s) 134, 229
StyI CCWWGG 1 cut(s) 316
TaiI ACGT 1 cut(s) 480
TaqI TCGA 1 cut(s) 64
TasI AATT 6 cut(s) 140, 208, 306, 347, 395, 483
TfiI GAWTC 1 cut(s) 337
Tru1I TTAA 5 cut(s) 98, 264, 309, 482, 555
Tru9I TTAA 5 cut(s) 98, 264, 309, 482, 555
TscAI CASTG 1 cut(s) 370
TseFI GTSAC 2 cut(s) 284, 329
TseI GCWGC 2 cut(s) 221, 325
Tsp45I GTSAC 2 cut(s) 284, 329
TspDTI ATGAA 1 cut(s) 134
TspRI CASTG 1 cut(s) 370
Tth111I GACNNNGTC 1 cut(s) 273
XapI RAATTY 3 cut(s) 140, 208, 395
XbaI TCTAGA 1 cut(s) 427
XspI CTAG 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.