Rh1CG319100
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0014838
Physical Location & Seq
Forward (+)
59433350 .. 59433715
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG319100.1

Sequence Viewer

Length: 366 bp
ATGTACTCGAGGTTGATCTCTTATATTGCTTGTTTAGGGAATTCTAATAGCAAGGTGTCATCTGTCTCACTGCCTTCAACTCCTCGAACAGAGGGTGAGATCTTGATGTCTTCCAACTTGAAGAACTTCTTTTTTAATGAACTGAAAACAGCCACAAGGAACTTTCGTCCTGACAGTATGGTGGGTGAAGGCGGTTTTGGTAGTGTTTTTAAGGGCTGGGTTGATGAGAATGCATTAACAGCTGCCAAGCCTGGTACTGGAATGGTTATTGCTGTGAAGAGGCTTAACCAAGAAGGTCTCCAGGGTCACAAGGAATGGTTGGTGAGTGTAACTCTCTCCTTCATTTGCTTGCGTTCGCTTCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

121

Amino Acids

13.24

Weight (kDa)

9.34

Isoelectric Point (pI)

40.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 192
AcsI RAATTY 1 cut(s) 40
AfaI GTAC 2 cut(s) 5, 256
AfiI CCNNNNNNNGG 1 cut(s) 257
AgsI TTSAA 2 cut(s) 78, 121
AjnI CCWGG 2 cut(s) 250, 300
AjuI GAANNNNNNNTTGG 2 cut(s) 180, 212
AluBI AGCT 1 cut(s) 242
AluI AGCT 1 cut(s) 242
Alw26I GTCTC 2 cut(s) 70, 302
Ama87I CYCGRG 1 cut(s) 7
ApeKI GCWGC 1 cut(s) 242
ApoI RAATTY 1 cut(s) 40
Asp700I GAANNNNTTC 1 cut(s) 125
AsuHPI GGTGA 3 cut(s) 107, 197, 334
AvaI CYCGRG 1 cut(s) 7
BbsI GAAGAC 1 cut(s) 102
BbvI GCAGC 1 cut(s) 229
BciT130I CCWGG 2 cut(s) 252, 302
BcoDI GTCTC 2 cut(s) 70, 302
BglII AGATCT 1 cut(s) 99
BisI GCNGC 1 cut(s) 243
BlsI GCNGC 1 cut(s) 244
Bme1390I CCNGG 2 cut(s) 252, 302
BmeT110I CYCGRG 1 cut(s) 7
BmrFI CCNGG 2 cut(s) 252, 302
BpiI GAAGAC 1 cut(s) 102
BplI GAGNNNNNCTC 2 cut(s) 316, 348
BpmI CTGGAG 1 cut(s) 284
BsaI GGTCTC 1 cut(s) 302
BsaJI CCNNGG 1 cut(s) 301
Bsc4I CCNNNNNNNGG 1 cut(s) 257
Bse1I ACTGG 1 cut(s) 262
BseBI CCWGG 2 cut(s) 252, 302
BseDI CCNNGG 1 cut(s) 301
BseLI CCNNNNNNNGG 1 cut(s) 257
BseNI ACTGG 1 cut(s) 262
BseRI GAGGAG 1 cut(s) 72
BseXI GCAGC 1 cut(s) 229
BseYI CCCAGC 1 cut(s) 216
BsiHKCI CYCGRG 1 cut(s) 7
BslI CCNNNNNNNGG 1 cut(s) 257
BsmAI GTCTC 2 cut(s) 70, 302
BsmI GAATGC 1 cut(s) 235
Bso31I GGTCTC 1 cut(s) 302
BsoBI CYCGRG 1 cut(s) 7
Bsp143I GATC 2 cut(s) 15, 99
BspACI CCGC 1 cut(s) 192
BspTNI GGTCTC 1 cut(s) 302
BsrI ACTGG 1 cut(s) 262
BssECI CCNNGG 1 cut(s) 301
BssMI GATC 2 cut(s) 15, 99
Bst2UI CCWGG 2 cut(s) 252, 302
Bst4CI ACNGT 1 cut(s) 176
Bst6I CTCTTC 1 cut(s) 272
BstC8I GCNNGC 1 cut(s) 350
BstKTI GATC 2 cut(s) 18, 102
BstMAI GTCTC 2 cut(s) 70, 302
BstMBI GATC 2 cut(s) 15, 99
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNI CCWGG 2 cut(s) 252, 302
BstSCI CCNGG 2 cut(s) 250, 300
BstV1I GCAGC 1 cut(s) 229
BstV2I GAAGAC 1 cut(s) 102
BstX2I RGATCY 1 cut(s) 99
BstYI RGATCY 1 cut(s) 99
BtsI GCAGTG 1 cut(s) 68
BtsIMutI CAGTG 1 cut(s) 68
Cac8I GCNNGC 1 cut(s) 350
Csp6I GTAC 2 cut(s) 4, 255
CviJI RGCY 5 cut(s) 152, 216, 242, 250, 283
CviKI_1 RGCY 5 cut(s) 152, 216, 242, 250, 283
CviQI GTAC 2 cut(s) 4, 255
DpnI GATC 2 cut(s) 17, 101
DpnII GATC 2 cut(s) 15, 99
Eam1104I CTCTTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 272
Eco31I GGTCTC 1 cut(s) 302
Eco88I CYCGRG 1 cut(s) 7
EcoRI GAATTC 1 cut(s) 40
EcoRII CCWGG 2 cut(s) 250, 300
EcoT22I ATGCAT 1 cut(s) 235
FaiI YATR 2 cut(s) 24, 179
FalI AAGNNNNNCTT 2 cut(s) 113, 145
Fnu4HI GCNGC 1 cut(s) 243
Fsp4HI GCNGC 1 cut(s) 243
GluI GCNGC 1 cut(s) 243
GsaI CCCAGC 1 cut(s) 220
GsuI CTGGAG 1 cut(s) 284
HphI GGTGA 3 cut(s) 107, 197, 334
Hpy188III TCNNGA 2 cut(s) 103, 170
HpyAV CCTTC 4 cut(s) 84, 182, 287, 349
HpyCH4III ACNGT 1 cut(s) 176
HpyCH4V TGCA 1 cut(s) 233
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
Kzo9I GATC 2 cut(s) 15, 99
LpnPI CCDG 7 cut(s) 183, 202, 237, 243, 264, 287, 314
Lsp1109I GCAGC 1 cut(s) 229
MaeIII GTNAC 2 cut(s) 305, 328
MalI GATC 2 cut(s) 17, 101
MboI GATC 2 cut(s) 15, 99
MboII GAAGA 3 cut(s) 102, 133, 289
MflI RGATCY 1 cut(s) 99
MluCI AATT 1 cut(s) 40
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 4 cut(s) 3, 85, 93, 273
Mph1103I ATGCAT 1 cut(s) 235
MroXI GAANNNNTTC 1 cut(s) 125
MseI TTAA 4 cut(s) 135, 210, 236, 285
MspA1I CMGCKG 1 cut(s) 242
MspR9I CCNGG 2 cut(s) 252, 302
Mva1269I GAATGC 1 cut(s) 235
MvaI CCWGG 2 cut(s) 252, 302
MwoI GCNNNNNNNGC 1 cut(s) 239
NdeII GATC 2 cut(s) 15, 99
NmuCI GTSAC 1 cut(s) 305
NsiI ATGCAT 1 cut(s) 235
PaeR7I CTCGAG 1 cut(s) 7
PctI GAATGC 1 cut(s) 235
PdmI GAANNNNTTC 1 cut(s) 125
PkrI GCNGC 1 cut(s) 244
Psp6I CCWGG 2 cut(s) 250, 300
PspFI CCCAGC 1 cut(s) 216
PspGI CCWGG 2 cut(s) 250, 300
PspXI VCTCGAGB 1 cut(s) 7
PsuI RGATCY 1 cut(s) 99
PvuII CAGCTG 1 cut(s) 242
RsaI GTAC 2 cut(s) 5, 256
RsaNI GTAC 2 cut(s) 4, 255
SaqAI TTAA 4 cut(s) 135, 210, 236, 285
SatI GCNGC 1 cut(s) 243
Sau3AI GATC 2 cut(s) 15, 99
ScrFI CCNGG 2 cut(s) 252, 302
SetI ASST 4 cut(s) 14, 57, 244, 298
Sfr274I CTCGAG 1 cut(s) 7
SlaI CTCGAG 1 cut(s) 7
SmlI CTYRAG 1 cut(s) 7
SmoI CTYRAG 1 cut(s) 7
Sse9I AATT 1 cut(s) 40
SsiI CCGC 1 cut(s) 192
StyD4I CCNGG 2 cut(s) 250, 300
TaaI ACNGT 1 cut(s) 176
TaqI TCGA 2 cut(s) 8, 85
TasI AATT 1 cut(s) 40
TatI WGTACW 1 cut(s) 3
Tru1I TTAA 4 cut(s) 135, 210, 236, 285
Tru9I TTAA 4 cut(s) 135, 210, 236, 285
TscAI CASTG 1 cut(s) 75
TseFI GTSAC 1 cut(s) 305
TseI GCWGC 1 cut(s) 242
Tsp45I GTSAC 1 cut(s) 305
TspDTI ATGAA 2 cut(s) 153, 331
TspRI CASTG 1 cut(s) 75
XapI RAATTY 1 cut(s) 40
XhoI CTCGAG 1 cut(s) 7
XmnI GAANNNNTTC 1 cut(s) 125
Zsp2I ATGCAT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.