Rh1DG335400

Belongs to the helicase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0014838
Physical Location & Seq
Forward (+)
56099927 .. 56122006
22080 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG335400.1

Sequence Viewer

Length: 909 bp
ATGGTGATTCATGCCATAAAGGAGGGGAGAGAGGGAGAGAGGAAGGAGAACAAGGAGCATATATATATTGAACACTACGATGAGTGGTGGGCTTCGGACAAGCGTGAAGGGTACATTATTGCACAACGGGTCACTGGGGCACTAGAAATAAACACGGTGCACGAGAATGAGAATGAGACGAGCATAAATGTAACTAGCAATTCCACAGCTGGTGACTCTGCTGACTCTGTGGATCATCCACCTCTGCTTTCATTTCCAGAGACTTCAGCTTCATACGGGCTCAATATCTGTGATGGGAACATTCCTTGCCTGCCAATGTTGAGCTCTGCTGCATCGTGTATGGCTTCTTATGGGACTACAACCGGCGCTGAGTGTCCTCCTCACGCTGTGCCTTCAACTCCTCGAACAGAGGGTGAAATCTTGCTGTTCCCCACCTTAAAGACCTTCTCCTTTAGTGAACTGAAAAGATCTACCAGGAAATTTCATTCTGATAATATGTTGGGAGAAGGTGGTTTTGGTTGTGTCTTCAAGGGTTGGGTTGATGGGAATTCACTAACAGCTGCCAAGCCTGGTACTGGCATGGTCATTGCTGTGAAGAGGCTTAACCGACAAAGTCTTCAGGGTCACAAGGAATGGATGACAGAAATTAACAACCTTGGAAGGCTGCGTCACCCGAATCTTGTGAAATTGATTGGCTATTGCACTGAGGATGATGACCGCCTTTTGGTGTACGAATTTATGCCTTGTGGAAGCTTGAATAATCATCTAGAAAAGTGCAAACAACAAACTGCAAGTGTAAACACACGAGTAGAAAACGTGTTAATTATTGGTCAACATGATGTTACCAACTCTTTCTCCTCCTCAGCTTTCCAAGAGGTCTCTCTGTCTCTGGTTAACTCCTTCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460
Pfam Domains
Protein Families
Helitron_like_N Herpes_Helicase PIF1 REPA_OB_2

Protein Analysis

302

Amino Acids

33.35

Weight (kDa)

5.57

Isoelectric Point (pI)

40.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 161 - 260 1.6e-13 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 163 - 264 3e-18 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 718
AclWI GGATC 1 cut(s) 240
AcsI RAATTY 3 cut(s) 479, 547, 734
AcuI CTGAAG 2 cut(s) 249, 602
AdeI CACNNNGTG 1 cut(s) 388
AfaI GTAC 3 cut(s) 113, 574, 731
AfiI CCNNNNNNNGG 2 cut(s) 575, 724
AflIII ACRYGT 1 cut(s) 816
AgsI TTSAA 4 cut(s) 71, 396, 529, 757
AjnI CCWGG 2 cut(s) 473, 568
AjuI GAANNNNNNNTTGG 2 cut(s) 498, 530
AluBI AGCT 6 cut(s) 209, 269, 324, 560, 753, 866
AluI AGCT 6 cut(s) 209, 269, 324, 560, 753, 866
Alw21I GWGCWC 2 cut(s) 162, 326
Alw26I GTCTC 4 cut(s) 170, 254, 883, 891
Alw44I GTGCAC 1 cut(s) 158
AlwI GGATC 1 cut(s) 240
ApaLI GTGCAC 1 cut(s) 158
ApeKI GCWGC 3 cut(s) 329, 560, 664
ApoI RAATTY 3 cut(s) 479, 547, 734
AspLEI GCGC 1 cut(s) 368
AsuHPI GGTGA 4 cut(s) 16, 224, 425, 662
BaeGI GKGCMC 2 cut(s) 142, 162
BanII GRGCYC 2 cut(s) 282, 326
BauI CACGAG 2 cut(s) 161, 804
BbsI GAAGAC 2 cut(s) 517, 608
Bbv12I GWGCWC 2 cut(s) 162, 326
BbvCI CCTCAGC 1 cut(s) 862
BbvI GCAGC 3 cut(s) 316, 547, 651
BccI CCATC 2 cut(s) 287, 536
BciT130I CCWGG 2 cut(s) 475, 570
BcoDI GTCTC 4 cut(s) 170, 254, 883, 891
BfaI CTAG 3 cut(s) 143, 195, 767
BfoI RGCGCY 1 cut(s) 369
BglII AGATCT 1 cut(s) 467
BisI GCNGC 3 cut(s) 330, 561, 665
BlsI GCNGC 3 cut(s) 331, 562, 666
Bme1390I CCNGG 2 cut(s) 475, 570
BmrFI CCNGG 2 cut(s) 475, 570
BmrI ACTGGG 1 cut(s) 144
BmsI GCATC 1 cut(s) 341
BmuI ACTGGG 1 cut(s) 144
BpiI GAAGAC 2 cut(s) 517, 608
Bpu10I CCTNAGC 1 cut(s) 862
BsaI GGTCTC 1 cut(s) 883
BsaJI CCNNGG 1 cut(s) 655
BsaXI ACNNNNNCTCC 2 cut(s) 839, 869
Bsc4I CCNNNNNNNGG 2 cut(s) 575, 724
Bse118I RCCGGY 1 cut(s) 362
Bse1I ACTGG 2 cut(s) 139, 580
Bse3DI GCAATG 1 cut(s) 585
BseBI CCWGG 2 cut(s) 475, 570
BseDI CCNNGG 1 cut(s) 655
BseGI GGATG 3 cut(s) 235, 642, 715
BseLI CCNNNNNNNGG 2 cut(s) 575, 724
BseMI GCAATG 1 cut(s) 585
BseMII CTCAG 3 cut(s) 360, 696, 876
BseNI ACTGG 2 cut(s) 139, 580
BseRI GAGGAG 4 cut(s) 369, 390, 847, 850
BseSI GKGCMC 2 cut(s) 142, 162
BseXI GCAGC 3 cut(s) 316, 547, 651
BsiHKAI GWGCWC 2 cut(s) 162, 326
BsiSI CCGG 1 cut(s) 363
BslFI GGGAC 1 cut(s) 367
BslI CCNNNNNNNGG 2 cut(s) 575, 724
BsmAI GTCTC 4 cut(s) 170, 254, 883, 891
BsmBI CGTCTC 1 cut(s) 170
BsmFI GGGAC 1 cut(s) 367
Bso31I GGTCTC 1 cut(s) 883
Bsp1286I GDGCHC 4 cut(s) 142, 162, 282, 326
Bsp143I GATC 2 cut(s) 232, 467
BspACI CCGC 1 cut(s) 718
BspCNI CTCAG 3 cut(s) 361, 697, 875
BspPI GGATC 1 cut(s) 240
BspTNI GGTCTC 1 cut(s) 883
BsrDI GCAATG 1 cut(s) 585
BsrFI RCCGGY 1 cut(s) 362
BsrI ACTGG 2 cut(s) 139, 580
BssAI RCCGGY 1 cut(s) 362
BssECI CCNNGG 1 cut(s) 655
BssMI GATC 2 cut(s) 232, 467
BssSI CACGAG 2 cut(s) 161, 804
BssT1I CCWWGG 1 cut(s) 655
Bst2BI CACGAG 2 cut(s) 161, 804
Bst2UI CCWGG 2 cut(s) 475, 570
Bst4CI ACNGT 1 cut(s) 157
Bst6I CTCTTC 1 cut(s) 590
BstC8I GCNNGC 1 cut(s) 311
BstDEI CTNAG 3 cut(s) 369, 705, 862
BstF5I GGATG 3 cut(s) 235, 642, 715
BstH2I RGCGCY 1 cut(s) 369
BstHHI GCGC 1 cut(s) 368
BstKTI GATC 2 cut(s) 235, 470
BstMAI GTCTC 4 cut(s) 170, 254, 883, 891
BstMBI GATC 2 cut(s) 232, 467
BstNI CCWGG 2 cut(s) 475, 570
BstSCI CCNGG 2 cut(s) 473, 568
BstSLI GKGCMC 2 cut(s) 142, 162
BstV1I GCAGC 3 cut(s) 316, 547, 651
BstV2I GAAGAC 2 cut(s) 517, 608
BstX2I RGATCY 1 cut(s) 467
BstYI RGATCY 1 cut(s) 467
BtsCI GGATG 3 cut(s) 235, 642, 715
BtsIMutI CAGTG 2 cut(s) 132, 702
Cac8I GCNNGC 1 cut(s) 311
CfoI GCGC 1 cut(s) 368
Cfr10I RCCGGY 1 cut(s) 362
CseI GACGC 1 cut(s) 656
Csp6I GTAC 3 cut(s) 112, 573, 730
CviAII CATG 3 cut(s) 11, 580, 836
CviQI GTAC 3 cut(s) 112, 573, 730
DdeI CTNAG 3 cut(s) 369, 705, 862
DpnI GATC 2 cut(s) 234, 469
DpnII GATC 2 cut(s) 232, 467
DraIII CACNNNGTG 1 cut(s) 388
Eam1104I CTCTTC 1 cut(s) 590
EarI CTCTTC 1 cut(s) 590
Ecl136II GAGCTC 1 cut(s) 324
Eco130I CCWWGG 1 cut(s) 655
Eco24I GRGCYC 2 cut(s) 282, 326
Eco31I GGTCTC 1 cut(s) 883
Eco53kI GAGCTC 1 cut(s) 324
Eco57I CTGAAG 2 cut(s) 249, 602
EcoICRI GAGCTC 1 cut(s) 324
EcoRI GAATTC 1 cut(s) 547
EcoRII CCWGG 2 cut(s) 473, 568
EcoT14I CCWWGG 1 cut(s) 655
EcoT38I GRGCYC 2 cut(s) 282, 326
ErhI CCWWGG 1 cut(s) 655
Esp3I CGTCTC 1 cut(s) 170
FaeI CATG 3 cut(s) 14, 583, 839
FaqI GGGAC 1 cut(s) 367
FatI CATG 3 cut(s) 10, 579, 835
Fnu4HI GCNGC 3 cut(s) 330, 561, 665
FokI GGATG 3 cut(s) 222, 649, 722
FriOI GRGCYC 2 cut(s) 282, 326
Fsp4HI GCNGC 3 cut(s) 330, 561, 665
FspBI CTAG 3 cut(s) 143, 195, 767
GlaI GCGC 1 cut(s) 367
GluI GCNGC 3 cut(s) 330, 561, 665
HaeII RGCGCY 1 cut(s) 369
HapII CCGG 1 cut(s) 363
HgaI GACGC 1 cut(s) 656
HhaI GCGC 1 cut(s) 368
Hin1II CATG 3 cut(s) 14, 583, 839
Hin6I GCGC 1 cut(s) 366
HinP1I GCGC 1 cut(s) 366
HincII GTYRAC 2 cut(s) 833, 895
HindII GTYRAC 2 cut(s) 833, 895
HindIII AAGCTT 1 cut(s) 751
HinfI GANTC 4 cut(s) 7, 215, 224, 676
HpaI GTTAAC 1 cut(s) 895
HpaII CCGG 1 cut(s) 363
HphI GGTGA 4 cut(s) 16, 224, 425, 662
Hpy166II GTNNAC 6 cut(s) 160, 458, 730, 799, 833, 895
Hpy188I TCNGA 2 cut(s) 97, 490
Hpy188III TCNNGA 2 cut(s) 257, 767
Hpy8I GTNNAC 6 cut(s) 160, 458, 730, 799, 833, 895
HpyAV CCTTC 6 cut(s) 37, 101, 402, 454, 500, 654
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4IV ACGT 1 cut(s) 816
HpyCH4V TGCA 6 cut(s) 122, 160, 332, 702, 777, 791
HpyF3I CTNAG 3 cut(s) 369, 705, 862
HpySE526I ACGT 1 cut(s) 816
Hsp92II CATG 3 cut(s) 14, 583, 839
HspAI GCGC 1 cut(s) 366
KspAI GTTAAC 1 cut(s) 895
Kzo9I GATC 2 cut(s) 232, 467
LmnI GCTCC 1 cut(s) 55
Lsp1109I GCAGC 3 cut(s) 316, 547, 651
LweI GCATC 1 cut(s) 341
MaeI CTAG 3 cut(s) 143, 195, 767
MaeII ACGT 1 cut(s) 816
MaeIII GTNAC 6 cut(s) 130, 190, 212, 623, 668, 841
MalI GATC 2 cut(s) 234, 469
MboI GATC 2 cut(s) 232, 467
MboII GAAGA 3 cut(s) 517, 607, 608
MflI RGATCY 1 cut(s) 467
MhlI GDGCHC 4 cut(s) 142, 162, 282, 326
MluCI AATT 7 cut(s) 199, 479, 547, 645, 686, 734, 822
MlyI GAGTC 2 cut(s) 209, 218
MseI TTAA 5 cut(s) 437, 603, 648, 821, 894
MslI CAYNNNNRTG 3 cut(s) 78, 165, 590
MspA1I CMGCKG 2 cut(s) 209, 560
MspI CCGG 1 cut(s) 363
MspR9I CCNGG 2 cut(s) 475, 570
MvaI CCWGG 2 cut(s) 475, 570
NdeII GATC 2 cut(s) 232, 467
NlaIII CATG 3 cut(s) 14, 583, 839
NmuCI GTSAC 4 cut(s) 130, 212, 623, 668
PfeI GAWTC 2 cut(s) 7, 676
PflFI GACNNNGTC 1 cut(s) 612
PkrI GCNGC 3 cut(s) 331, 562, 666
PleI GAGTC 2 cut(s) 209, 218
PpsI GAGTC 2 cut(s) 209, 218
Psp124BI GAGCTC 1 cut(s) 326
Psp6I CCWGG 2 cut(s) 473, 568
PspGI CCWGG 2 cut(s) 473, 568
PsuI RGATCY 1 cut(s) 467
PsyI GACNNNGTC 1 cut(s) 612
PvuII CAGCTG 2 cut(s) 209, 560
RsaI GTAC 3 cut(s) 113, 574, 731
RsaNI GTAC 3 cut(s) 112, 573, 730
RseI CAYNNNNRTG 3 cut(s) 78, 165, 590
SacI GAGCTC 1 cut(s) 326
SaqAI TTAA 5 cut(s) 437, 603, 648, 821, 894
SatI GCNGC 3 cut(s) 330, 561, 665
Sau3AI GATC 2 cut(s) 232, 467
SchI GAGTC 2 cut(s) 209, 218
ScrFI CCNGG 2 cut(s) 475, 570
SduI GDGCHC 4 cut(s) 142, 162, 282, 326
SfaNI GCATC 1 cut(s) 341
SmiMI CAYNNNNRTG 3 cut(s) 78, 165, 590
Sse9I AATT 7 cut(s) 199, 479, 547, 645, 686, 734, 822
SsiI CCGC 1 cut(s) 718
SspMI CTAG 3 cut(s) 143, 195, 767
SstI GAGCTC 1 cut(s) 326
StyD4I CCNGG 2 cut(s) 473, 568
StyI CCWWGG 1 cut(s) 655
TaaI ACNGT 1 cut(s) 157
TaiI ACGT 1 cut(s) 819
TaqI TCGA 1 cut(s) 403
TasI AATT 7 cut(s) 199, 479, 547, 645, 686, 734, 822
TfiI GAWTC 2 cut(s) 7, 676
Tru1I TTAA 5 cut(s) 437, 603, 648, 821, 894
Tru9I TTAA 5 cut(s) 437, 603, 648, 821, 894
TscAI CASTG 2 cut(s) 139, 709
TseFI GTSAC 4 cut(s) 130, 212, 623, 668
TseI GCWGC 3 cut(s) 329, 560, 664
Tsp45I GTSAC 4 cut(s) 130, 212, 623, 668
TspDTI ATGAA 3 cut(s) 240, 261, 473
TspRI CASTG 2 cut(s) 139, 709
Tth111I GACNNNGTC 1 cut(s) 612
VneI GTGCAC 1 cut(s) 158
XapI RAATTY 3 cut(s) 479, 547, 734
XbaI TCTAGA 1 cut(s) 766
XspI CTAG 3 cut(s) 143, 195, 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.