Rh3DG032300
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0014838
Physical Location & Seq
Forward (+)
2178607 .. 2192439
13833 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG032300.1

Sequence Viewer

Length: 438 bp
ATGACGGTGAATTCCACTAATGCAGACCTGCATGTGTCATCTGTCTCAGTGCCTTCAACTCCTCGGACAGAGGTTGAGATCTTGCTAAAGAGCTTCTTTTTTAATGAACTGAAAACCGCCACCAGGAACTTTCGGCCTGATAATGTGGTGGGTGAGGGTGGTTTTGGTACTATCTTTAAGGGGTGGATTGATCAGAATTCATTAGCAGCTGCCAAGCCTGGTAAAGGAACGACTGTTGCTATAAAGAGGCTTAACCAAGAAAGTTATCAGGGTCGAGAGGAATGGTTTTTAGCATTACATAGAGTTTGCATACATGTTCCACAGAATCCTTTGTATCCTTGTATTAATAATGATAAGAAGAAACCCTTAATCCCCATAACTCATGGCAGGCATGAAGAAAAAATTTCAGACTTGCTGGACCTGTATTCCAGCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

145

Amino Acids

16.31

Weight (kDa)

8.57

Isoelectric Point (pI)

22.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 36
AciI CCGC 1 cut(s) 117
AcsI RAATTY 3 cut(s) 10, 196, 402
AfaI GTAC 1 cut(s) 169
AfiI CCNNNNNNNGG 2 cut(s) 123, 224
AflIII ACRYGT 1 cut(s) 313
AgsI TTSAA 1 cut(s) 57
AjnI CCWGG 2 cut(s) 122, 217
AluBI AGCT 3 cut(s) 93, 209, 432
AluI AGCT 3 cut(s) 93, 209, 432
Alw26I GTCTC 1 cut(s) 49
AoxI GGCC 1 cut(s) 134
ApeKI GCWGC 2 cut(s) 206, 209
ApoI RAATTY 3 cut(s) 10, 196, 402
AseI ATTAAT 1 cut(s) 345
AspS9I GGNCC 1 cut(s) 418
AsuHPI GGTGA 2 cut(s) 19, 164
AvaII GGWCC 1 cut(s) 418
BbvI GCAGC 2 cut(s) 196, 218
BciT130I CCWGG 2 cut(s) 124, 219
BciVI GTATCC 1 cut(s) 345
BclI TGATCA 1 cut(s) 190
BcoDI GTCTC 1 cut(s) 49
BfuAI ACCTGC 1 cut(s) 36
BfuI GTATCC 1 cut(s) 345
BglII AGATCT 1 cut(s) 78
BisI GCNGC 2 cut(s) 207, 210
BlsI GCNGC 2 cut(s) 208, 211
Bme1390I CCNGG 2 cut(s) 124, 219
Bme18I GGWCC 1 cut(s) 418
BmgT120I GGNCC 1 cut(s) 418
BmrFI CCNGG 2 cut(s) 124, 219
BsaJI CCNNGG 1 cut(s) 62
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 224
BseBI CCWGG 2 cut(s) 124, 219
BseDI CCNNGG 1 cut(s) 62
BseLI CCNNNNNNNGG 2 cut(s) 123, 224
BseMII CTCAG 1 cut(s) 60
BseRI GAGGAG 1 cut(s) 51
BseXI GCAGC 2 cut(s) 196, 218
BshFI GGCC 1 cut(s) 136
BslI CCNNNNNNNGG 2 cut(s) 123, 224
BsmAI GTCTC 1 cut(s) 49
BsnI GGCC 1 cut(s) 136
Bsp143I GATC 2 cut(s) 78, 190
BspACI CCGC 1 cut(s) 117
BspANI GGCC 1 cut(s) 136
BspCNI CTCAG 1 cut(s) 59
BspMI ACCTGC 1 cut(s) 36
BssECI CCNNGG 1 cut(s) 62
BssMI GATC 2 cut(s) 78, 190
Bst2UI CCWGG 2 cut(s) 124, 219
Bst4CI ACNGT 2 cut(s) 7, 235
BstC8I GCNNGC 1 cut(s) 389
BstDEI CTNAG 1 cut(s) 46
BstENI CCTNNNNNAGG 1 cut(s) 222
BstKTI GATC 2 cut(s) 81, 193
BstMAI GTCTC 1 cut(s) 49
BstMBI GATC 2 cut(s) 78, 190
BstNI CCWGG 2 cut(s) 124, 219
BstNSI RCATGY 2 cut(s) 35, 317
BstSCI CCNGG 2 cut(s) 122, 217
BstV1I GCAGC 2 cut(s) 196, 218
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
BsuI GTATCC 1 cut(s) 345
BsuRI GGCC 1 cut(s) 136
BtsIMutI CAGTG 1 cut(s) 54
BveI ACCTGC 1 cut(s) 36
Cac8I GCNNGC 1 cut(s) 389
Cfr13I GGNCC 1 cut(s) 418
Csp6I GTAC 1 cut(s) 168
CviAII CATG 4 cut(s) 32, 314, 383, 392
CviJI RGCY 6 cut(s) 93, 136, 209, 217, 250, 432
CviKI_1 RGCY 6 cut(s) 93, 136, 209, 217, 250, 432
CviQI GTAC 1 cut(s) 168
DdeI CTNAG 1 cut(s) 46
DpnI GATC 2 cut(s) 80, 192
DpnII GATC 2 cut(s) 78, 190
Eco47I GGWCC 1 cut(s) 418
EcoNI CCTNNNNNAGG 1 cut(s) 222
EcoRI GAATTC 2 cut(s) 10, 196
EcoRII CCWGG 2 cut(s) 122, 217
FaeI CATG 4 cut(s) 35, 317, 386, 395
FaiI YATR 8 cut(s) 33, 242, 300, 311, 315, 377, 384, 393
FalI AAGNNNNNCTT 4 cut(s) 80, 112, 350, 382
FatI CATG 4 cut(s) 31, 313, 382, 391
FbaI TGATCA 1 cut(s) 190
Fnu4HI GCNGC 2 cut(s) 207, 210
Fsp4HI GCNGC 2 cut(s) 207, 210
GluI GCNGC 2 cut(s) 207, 210
HaeIII GGCC 1 cut(s) 136
Hin1II CATG 4 cut(s) 35, 317, 386, 395
HinfI GANTC 1 cut(s) 325
HphI GGTGA 2 cut(s) 19, 164
Hpy188I TCNGA 3 cut(s) 66, 195, 409
Hpy188III TCNNGA 1 cut(s) 275
HpyAV CCTTC 1 cut(s) 63
HpyCH4III ACNGT 2 cut(s) 7, 235
HpyCH4V TGCA 3 cut(s) 23, 31, 309
HpyF3I CTNAG 1 cut(s) 46
Hsp92II CATG 4 cut(s) 35, 317, 386, 395
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 2 cut(s) 78, 190
Lsp1109I GCAGC 2 cut(s) 196, 218
MalI GATC 2 cut(s) 80, 192
MboI GATC 2 cut(s) 78, 190
MboII GAAGA 2 cut(s) 370, 407
MflI RGATCY 1 cut(s) 78
MluCI AATT 3 cut(s) 10, 196, 402
MnlI CCTC 5 cut(s) 64, 72, 148, 240, 271
MseI TTAA 5 cut(s) 102, 177, 252, 345, 368
MspA1I CMGCKG 1 cut(s) 209
MspR9I CCNGG 2 cut(s) 124, 219
MvaI CCWGG 2 cut(s) 124, 219
NdeII GATC 2 cut(s) 78, 190
NlaIII CATG 4 cut(s) 35, 317, 386, 395
NspI RCATGY 2 cut(s) 35, 317
PciI ACATGT 1 cut(s) 313
PfeI GAWTC 1 cut(s) 325
PkrI GCNGC 2 cut(s) 208, 211
PscI ACATGT 1 cut(s) 313
PshBI ATTAAT 1 cut(s) 345
Psp6I CCWGG 2 cut(s) 122, 217
PspGI CCWGG 2 cut(s) 122, 217
PspPI GGNCC 1 cut(s) 418
PsuI RGATCY 1 cut(s) 78
PvuII CAGCTG 1 cut(s) 209
RsaI GTAC 1 cut(s) 169
RsaNI GTAC 1 cut(s) 168
SaqAI TTAA 5 cut(s) 102, 177, 252, 345, 368
SatI GCNGC 2 cut(s) 207, 210
Sau3AI GATC 2 cut(s) 78, 190
Sau96I GGNCC 1 cut(s) 418
ScrFI CCNGG 2 cut(s) 124, 219
SetI ASST 6 cut(s) 30, 75, 95, 211, 423, 434
SinI GGWCC 1 cut(s) 418
Sse9I AATT 3 cut(s) 10, 196, 402
SsiI CCGC 1 cut(s) 117
StyD4I CCNGG 2 cut(s) 122, 217
TaaI ACNGT 2 cut(s) 7, 235
TaqI TCGA 1 cut(s) 274
TasI AATT 3 cut(s) 10, 196, 402
TfiI GAWTC 1 cut(s) 325
Tru1I TTAA 5 cut(s) 102, 177, 252, 345, 368
Tru9I TTAA 5 cut(s) 102, 177, 252, 345, 368
TscAI CASTG 1 cut(s) 54
TseI GCWGC 2 cut(s) 206, 209
TspDTI ATGAA 3 cut(s) 120, 189, 408
TspRI CASTG 1 cut(s) 54
VpaK11BI GGWCC 1 cut(s) 418
VspI ATTAAT 1 cut(s) 345
XagI CCTNNNNNAGG 1 cut(s) 222
XapI RAATTY 3 cut(s) 10, 196, 402
XceI RCATGY 2 cut(s) 35, 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.