Rh1BG302800
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0014838
Physical Location & Seq
Forward (+)
43935816 .. 43943129
7314 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG302800.1

Sequence Viewer

Length: 447 bp
ATGGTGATTCATGCCATAAAGGAGGGGAGAGAGGGAGAGAGGAAGGAGAACAAGGAGCATATATATATTGAACACTACGATGAGTGGTGGGCTTCGGACAAGCGTGAAGGGTACATTATTGCACAACGGGTCACTGGGGCACTAGAAATAAACACGGTGCACGAGAATGAGAATGAGACGAGCATAAATGTAACTAGCAATTCCACAGCTGGTGACTCTGCTGACTCTGTGGATCATCCACCTCTGCTTTCATTTCCAGAGACTTCAGCTTCATACGGGCTCAATATCTGTGATGGGAACATTCCTTGCCTGCCAATGTTGAGCTCTGCTGCATCGGTACACAAGTCATACTCGGACATTAATTTTTCATTATACATGTATGTTATGTATATGAGAGATAAGCCAAACCCAAGTCAGATTGCAAACTCAGCTAATGAATCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0035821 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0098542 GO:0140096 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

148

Amino Acids

16.56

Weight (kDa)

4.82

Isoelectric Point (pI)

43.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 240
AcuI CTGAAG 1 cut(s) 249
AfaI GTAC 2 cut(s) 113, 339
AflIII ACRYGT 1 cut(s) 375
AgsI TTSAA 1 cut(s) 71
AluBI AGCT 4 cut(s) 209, 269, 324, 431
AluI AGCT 4 cut(s) 209, 269, 324, 431
Alw21I GWGCWC 2 cut(s) 162, 326
Alw26I GTCTC 2 cut(s) 170, 254
Alw44I GTGCAC 1 cut(s) 158
AlwI GGATC 1 cut(s) 240
ApaLI GTGCAC 1 cut(s) 158
ApeKI GCWGC 1 cut(s) 329
AseI ATTAAT 1 cut(s) 360
AsuHPI GGTGA 2 cut(s) 16, 224
BaeGI GKGCMC 2 cut(s) 142, 162
BaeI ACNNNNGTAYC 2 cut(s) 329, 362
BanII GRGCYC 2 cut(s) 282, 326
BauI CACGAG 1 cut(s) 161
Bbv12I GWGCWC 2 cut(s) 162, 326
BbvI GCAGC 1 cut(s) 316
BccI CCATC 1 cut(s) 287
BcoDI GTCTC 2 cut(s) 170, 254
BfaI CTAG 2 cut(s) 143, 195
BisI GCNGC 1 cut(s) 330
BlsI GCNGC 1 cut(s) 331
BmrI ACTGGG 1 cut(s) 144
BmsI GCATC 1 cut(s) 341
BmuI ACTGGG 1 cut(s) 144
Bse1I ACTGG 1 cut(s) 139
BseGI GGATG 1 cut(s) 235
BseMII CTCAG 1 cut(s) 441
BseNI ACTGG 1 cut(s) 139
BseSI GKGCMC 2 cut(s) 142, 162
BseXI GCAGC 1 cut(s) 316
BsiHKAI GWGCWC 2 cut(s) 162, 326
BsmAI GTCTC 2 cut(s) 170, 254
BsmBI CGTCTC 1 cut(s) 170
Bsp1286I GDGCHC 4 cut(s) 142, 162, 282, 326
Bsp143I GATC 1 cut(s) 232
BspCNI CTCAG 1 cut(s) 440
BspPI GGATC 1 cut(s) 240
BsrI ACTGG 1 cut(s) 139
BssMI GATC 1 cut(s) 232
BssSI CACGAG 1 cut(s) 161
Bst2BI CACGAG 1 cut(s) 161
Bst4CI ACNGT 1 cut(s) 157
BstC8I GCNNGC 1 cut(s) 311
BstDEI CTNAG 1 cut(s) 427
BstF5I GGATG 1 cut(s) 235
BstKTI GATC 1 cut(s) 235
BstMAI GTCTC 2 cut(s) 170, 254
BstMBI GATC 1 cut(s) 232
BstMWI GCNNNNNNNGC 1 cut(s) 428
BstNSI RCATGY 1 cut(s) 379
BstSLI GKGCMC 2 cut(s) 142, 162
BstV1I GCAGC 1 cut(s) 316
BtsCI GGATG 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 132
Cac8I GCNNGC 1 cut(s) 311
Csp6I GTAC 2 cut(s) 112, 338
CviAII CATG 2 cut(s) 11, 376
CviJI RGCY 7 cut(s) 92, 209, 269, 280, 324, 403, 431
CviKI_1 RGCY 7 cut(s) 92, 209, 269, 280, 324, 403, 431
CviQI GTAC 2 cut(s) 112, 338
DdeI CTNAG 1 cut(s) 427
DpnI GATC 1 cut(s) 234
DpnII GATC 1 cut(s) 232
Ecl136II GAGCTC 1 cut(s) 324
Eco24I GRGCYC 2 cut(s) 282, 326
Eco53kI GAGCTC 1 cut(s) 324
Eco57I CTGAAG 1 cut(s) 249
EcoICRI GAGCTC 1 cut(s) 324
EcoT38I GRGCYC 2 cut(s) 282, 326
Esp3I CGTCTC 1 cut(s) 170
FaeI CATG 2 cut(s) 14, 379
FatI CATG 2 cut(s) 10, 375
Fnu4HI GCNGC 1 cut(s) 330
FokI GGATG 1 cut(s) 222
FriOI GRGCYC 2 cut(s) 282, 326
Fsp4HI GCNGC 1 cut(s) 330
FspBI CTAG 2 cut(s) 143, 195
GluI GCNGC 1 cut(s) 330
Hin1II CATG 2 cut(s) 14, 379
HinfI GANTC 4 cut(s) 7, 215, 224, 437
HphI GGTGA 2 cut(s) 16, 224
Hpy166II GTNNAC 2 cut(s) 160, 340
Hpy188I TCNGA 3 cut(s) 97, 355, 417
Hpy188III TCNNGA 1 cut(s) 257
Hpy8I GTNNAC 2 cut(s) 160, 340
HpyAV CCTTC 2 cut(s) 37, 101
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4V TGCA 4 cut(s) 122, 160, 332, 422
HpyF10VI GCNNNNNNNGC 1 cut(s) 428
HpyF3I CTNAG 1 cut(s) 427
Hsp92II CATG 2 cut(s) 14, 379
Kzo9I GATC 1 cut(s) 232
LmnI GCTCC 1 cut(s) 55
LpnPI CCDG 4 cut(s) 120, 195, 270, 323
Lsp1109I GCAGC 1 cut(s) 316
LweI GCATC 1 cut(s) 341
MaeI CTAG 2 cut(s) 143, 195
MaeIII GTNAC 3 cut(s) 130, 190, 212
MalI GATC 1 cut(s) 234
MboI GATC 1 cut(s) 232
MhlI GDGCHC 4 cut(s) 142, 162, 282, 326
MluCI AATT 2 cut(s) 199, 361
MlyI GAGTC 2 cut(s) 209, 218
MnlI CCTC 4 cut(s) 16, 25, 33, 252
MseI TTAA 2 cut(s) 360, 445
MslI CAYNNNNRTG 2 cut(s) 78, 165
MspA1I CMGCKG 1 cut(s) 209
MwoI GCNNNNNNNGC 1 cut(s) 428
NdeII GATC 1 cut(s) 232
NlaIII CATG 2 cut(s) 14, 379
NmuCI GTSAC 2 cut(s) 130, 212
NspI RCATGY 1 cut(s) 379
PciI ACATGT 1 cut(s) 375
PfeI GAWTC 2 cut(s) 7, 437
PkrI GCNGC 1 cut(s) 331
PleI GAGTC 2 cut(s) 209, 218
PpsI GAGTC 2 cut(s) 209, 218
PscI ACATGT 1 cut(s) 375
PshBI ATTAAT 1 cut(s) 360
Psp124BI GAGCTC 1 cut(s) 326
PvuII CAGCTG 1 cut(s) 209
RsaI GTAC 2 cut(s) 113, 339
RsaNI GTAC 2 cut(s) 112, 338
RseI CAYNNNNRTG 2 cut(s) 78, 165
SacI GAGCTC 1 cut(s) 326
SaqAI TTAA 2 cut(s) 360, 445
SatI GCNGC 1 cut(s) 330
Sau3AI GATC 1 cut(s) 232
SchI GAGTC 2 cut(s) 209, 218
SduI GDGCHC 4 cut(s) 142, 162, 282, 326
SetI ASST 5 cut(s) 211, 244, 271, 326, 433
SfaNI GCATC 1 cut(s) 341
SmiMI CAYNNNNRTG 2 cut(s) 78, 165
Sse9I AATT 2 cut(s) 199, 361
SspMI CTAG 2 cut(s) 143, 195
SstI GAGCTC 1 cut(s) 326
TaaI ACNGT 1 cut(s) 157
TasI AATT 2 cut(s) 199, 361
TfiI GAWTC 2 cut(s) 7, 437
Tru1I TTAA 2 cut(s) 360, 445
Tru9I TTAA 2 cut(s) 360, 445
TscAI CASTG 1 cut(s) 139
TseFI GTSAC 2 cut(s) 130, 212
TseI GCWGC 1 cut(s) 329
Tsp45I GTSAC 2 cut(s) 130, 212
TspDTI ATGAA 3 cut(s) 240, 261, 357
TspRI CASTG 1 cut(s) 139
VneI GTGCAC 1 cut(s) 158
VspI ATTAAT 1 cut(s) 360
XceI RCATGY 1 cut(s) 379
XspI CTAG 2 cut(s) 143, 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.