RLG00000034652

Anaphase-promoting complex subunit

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
47188347 .. 47192571
4225 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034652

Sequence Viewer

Length: 1305 bp
ATGGTAACTGAGGACTCCAAGATATTACTGCACCGCTTCAATTGGCAGAGGCTCGGGACGATCTCCCCAGGGAAGAGCATAACGTCTTTGTGTTGGAGACCTGATGGTAAAGCAATCGCCGTCGGGCTTGAAGATGGAACAGTCTCATTGCATGATGTTGAAAATGGAAAGTTGTTGAGGAGCTTGAAATCACATACTGTGGCTGTTGTTTCTCTTAATTGGGAGGAGGATGGACAGATGACTAGAGTATGTGCCAAATTGATTCTGTTGGCCACTCGGTATATGAAGACCGTACTTCTCATTTCTTTCCACCACCTCCAAGAGTTCCGCGAATGCCTGGACTGTGGAGATAAAGATGGATTCATTTGCTTTAGTATATTTGGGATCTTTCCGATAGGGAAAATTAACATACACAACTTTGGTGCTGCTAGTCCACTTAAGGATACTGAACCTGAGTGTAGACTTATGAATGCTTCTGCTTACAAGGTTGCTTTGTCAAAAGATCTTTGTCATTTGATAGTCGTGTGTTCAGGAGAATTAATTGAAGATACGGAAGAATCAGAAAACAGAAAAAGTGAGCTTCATCAAGTGGCGCAACAAGCTTCTAACATTGAGGAATTGGCAGAGGTTATTCGGTCATCAATTTCAGTTATGCACAAGGAGTGGTGTGATGCTATGCGCACTTTTCATGACAAGTTTGATTCTCTGTCTAATCTGATCATAGACCATGGAGTTTTGAGTCTTTTAGGCGGTGCAAGGACTAGTCCAGCAGTTCATCAGTTTCTAGTTAACTCTCTCGTTGAAGTGGGTGTGAAGCGCGTGTCAAAGGCTGTTTGTGGTGCTGGGAAAGAACTGCAGCTTATAATCCTAATCCATCTCCAGCCTGCTGCAGAAATTATTGCATTCAGGATGGGAGAACTAGGGGGCCTTTCACGATGGAGAGCATGCTATCAGGGCATCGGTTTGGATGAGTCGCTTATCAATAATGCAACAGAAAAAGCTGGAATGATACTTGTACAAGTTGAATGGTTTATCAGGGTGCTTTCATCTGTGGTGCAGCAGTTTTCAAACTTCTTCAATTGGCTCTTTAAGTGTATAAAGTTTCTCAATTCAGAATCCAGTGATCATCATCTTCTACTGTACAATAGTGAACTTGTTATATTCTTGAAGTTTTTATATGACCAAGATCCTGTTAAGCAGTTGCTGGAGGCGTCAGAAGCTGATGAGAGTATAGAAGTTGGATTATGGAGTCTAGGAGGCTTTCCAGATGCCCTTTACTACAATTTCAAGAAAGATAGTCTGTGA

Protein Analysis

435

Amino Acids

48.64

Weight (kDa)

5.7

Isoelectric Point (pI)

46.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANAPC4_WD40 PF12894 1 - 76 2e-20 Anaphase-promoting complex subunit 4 WD40 domain
WD40_WDHD1_1st PF24817 8 - 79 9.5e-06 WDHD1 first WD40 domain
Beta-prop_WDR36-Utp21_1st PF25171 9 - 81 3.7e-06 WDR36/Utp21 first beta-propeller
Beta-prop_THOC3 PF25174 18 - 84 1.2e-08 THOC3 beta-propeller domain
WD40_CDC20-Fz PF24807 22 - 78 9.3e-10 CDC20/Fizzy WD40 domain
WD40_Prp19 PF24814 24 - 78 8.2e-07 Prp19 WD40 domain
Beta-prop_WDR3_1st PF25173 25 - 81 8.7e-09 WDR3 first beta-propeller domain
Beta-prop_EML_2 PF23414 25 - 85 4e-07 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5 PF25175 26 - 80 2.4e-07 WDR5 beta-propeller domain
ANAPC4 PF12896 183 - 372 9.2e-47 Anaphase-promoting complex, cyclosome, subunit 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 863
Acc16I TGCGCA 1 cut(s) 680
AccI GTMKAC 1 cut(s) 460
AccII CGCG 2 cut(s) 330, 819
AciI CCGC 3 cut(s) 34, 328, 750
AclWI GGATC 2 cut(s) 392, 1181
AcoI YGGCCR 1 cut(s) 270
AcyI GRCGYC 1 cut(s) 1211
AfaI GTAC 3 cut(s) 294, 1017, 1142
AflII CTTAAG 1 cut(s) 437
AhlI ACTAGT 1 cut(s) 761
AjnI CCWGG 2 cut(s) 67, 336
AluBI AGCT 6 cut(s) 183, 580, 602, 859, 1001, 1220
AluI AGCT 6 cut(s) 183, 580, 602, 859, 1001, 1220
Alw26I GTCTC 2 cut(s) 91, 148
AlwI GGATC 2 cut(s) 392, 1181
AlwNI CAGNNNCTG 2 cut(s) 1204, 1220
Ama87I CYCGRG 1 cut(s) 53
AoxI GGCC 2 cut(s) 270, 925
ApeKI GCWGC 4 cut(s) 425, 856, 887, 1057
AseI ATTAAT 1 cut(s) 539
AspLEI GCGC 3 cut(s) 595, 681, 819
AspS9I GGNCC 1 cut(s) 925
AvaI CYCGRG 1 cut(s) 53
BalI TGGCCA 1 cut(s) 272
BbsI GAAGAC 1 cut(s) 293
BbvI GCAGC 4 cut(s) 412, 868, 874, 1069
BccI CCATC 7 cut(s) 98, 128, 224, 350, 882, 904, 930
BceAI ACGGC 1 cut(s) 104
BciT130I CCWGG 2 cut(s) 69, 338
BciVI GTATCC 1 cut(s) 436
BclI TGATCA 2 cut(s) 717, 1123
BcoDI GTCTC 2 cut(s) 91, 148
BcuI ACTAGT 1 cut(s) 761
BfaI CTAG 6 cut(s) 243, 429, 762, 785, 920, 1253
BfmI CTRYAG 2 cut(s) 854, 888
BfrI CTTAAG 1 cut(s) 437
BfuI GTATCC 1 cut(s) 436
BglII AGATCT 1 cut(s) 502
BisI GCNGC 4 cut(s) 426, 857, 888, 1058
BlsI GCNGC 4 cut(s) 427, 858, 889, 1059
Bme1390I CCNGG 2 cut(s) 69, 338
BmeT110I CYCGRG 1 cut(s) 53
BmgT120I GGNCC 1 cut(s) 925
BmiI GGNNCC 1 cut(s) 926
BmrFI CCNGG 2 cut(s) 69, 338
BmsI GCATC 3 cut(s) 661, 966, 1258
BpiI GAAGAC 1 cut(s) 293
BpmI CTGGAG 2 cut(s) 863, 1226
BsaBI GATNNNNATC 1 cut(s) 1128
BsaHI GRCGYC 1 cut(s) 1211
BsaI GGTCTC 1 cut(s) 91
BsaJI CCNNGG 3 cut(s) 67, 68, 727
Bse1I ACTGG 1 cut(s) 1119
Bse3DI GCAATG 1 cut(s) 146
Bse8I GATNNNNATC 1 cut(s) 1128
BseBI CCWGG 2 cut(s) 69, 338
BseDI CCNNGG 3 cut(s) 67, 68, 727
BseGI GGATG 3 cut(s) 235, 915, 973
BseJI GATNNNNATC 1 cut(s) 1128
BseMI GCAATG 1 cut(s) 146
BseMII CTCAG 1 cut(s) 444
BseNI ACTGG 1 cut(s) 1119
BseRI GAGGAG 2 cut(s) 193, 239
BseXI GCAGC 4 cut(s) 412, 868, 874, 1069
BseYI CCCAGC 1 cut(s) 842
BsgI GTGCAG 2 cut(s) 14, 1076
Bsh1236I CGCG 2 cut(s) 330, 819
BshFI GGCC 2 cut(s) 272, 927
BsiHKCI CYCGRG 1 cut(s) 53
BslFI GGGAC 1 cut(s) 70
BsmAI GTCTC 2 cut(s) 91, 148
BsmFI GGGAC 1 cut(s) 70
BsmI GAATGC 3 cut(s) 338, 475, 902
BsnI GGCC 2 cut(s) 272, 927
Bso31I GGTCTC 1 cut(s) 91
BsoBI CYCGRG 1 cut(s) 53
Bsp1407I TGTACA 2 cut(s) 1015, 1140
Bsp143I GATC 6 cut(s) 60, 384, 502, 717, 1123, 1186
Bsp19I CCATGG 1 cut(s) 727
BspACI CCGC 3 cut(s) 34, 328, 750
BspANI GGCC 2 cut(s) 272, 927
BspCNI CTCAG 1 cut(s) 445
BspFNI CGCG 2 cut(s) 330, 819
BspHI TCATGA 1 cut(s) 688
BspLI GGNNCC 1 cut(s) 926
BspMAI CTGCAG 2 cut(s) 858, 892
BspPI GGATC 2 cut(s) 392, 1181
BspQI GCTCTTC 1 cut(s) 68
BspTI CTTAAG 1 cut(s) 437
BspTNI GGTCTC 1 cut(s) 91
BsrDI GCAATG 1 cut(s) 146
BsrGI TGTACA 2 cut(s) 1015, 1140
BsrI ACTGG 1 cut(s) 1119
BssECI CCNNGG 3 cut(s) 67, 68, 727
BssMI GATC 6 cut(s) 60, 384, 502, 717, 1123, 1186
BssNI GRCGYC 1 cut(s) 1211
BssT1I CCWWGG 1 cut(s) 727
Bst2UI CCWGG 2 cut(s) 69, 338
Bst4CI ACNGT 5 cut(s) 142, 199, 292, 344, 1140
Bst6I CTCTTC 1 cut(s) 68
BstACI GRCGYC 1 cut(s) 1211
BstAFI CTTAAG 1 cut(s) 437
BstAUI TGTACA 2 cut(s) 1015, 1140
BstC8I GCNNGC 2 cut(s) 885, 946
BstDEI CTNAG 2 cut(s) 9, 453
BstDSI CCRYGG 1 cut(s) 727
BstF5I GGATG 3 cut(s) 235, 915, 973
BstFNI CGCG 2 cut(s) 330, 819
BstHHI GCGC 3 cut(s) 595, 681, 819
BstKTI GATC 6 cut(s) 63, 387, 505, 720, 1126, 1189
BstMAI GTCTC 2 cut(s) 91, 148
BstMBI GATC 6 cut(s) 60, 384, 502, 717, 1123, 1186
BstMWI GCNNNNNNNGC 3 cut(s) 599, 954, 1217
BstNI CCWGG 2 cut(s) 69, 338
BstNSI RCATGY 1 cut(s) 948
BstSCI CCNGG 2 cut(s) 67, 336
BstSFI CTRYAG 2 cut(s) 854, 888
BstUI CGCG 2 cut(s) 330, 819
BstV1I GCAGC 4 cut(s) 412, 868, 874, 1069
BstV2I GAAGAC 1 cut(s) 293
BstX2I RGATCY 3 cut(s) 384, 502, 1186
BstYI RGATCY 3 cut(s) 384, 502, 1186
BsuI GTATCC 1 cut(s) 436
BsuRI GGCC 2 cut(s) 272, 927
BtgI CCRYGG 1 cut(s) 727
BtsCI GGATG 3 cut(s) 235, 915, 973
BtsIMutI CAGTG 1 cut(s) 1126
Cac8I GCNNGC 2 cut(s) 885, 946
CaiI CAGNNNCTG 2 cut(s) 1204, 1220
CciI TCATGA 1 cut(s) 688
CfoI GCGC 3 cut(s) 595, 681, 819
Cfr13I GGNCC 1 cut(s) 925
CseI GACGC 1 cut(s) 1200
Csp6I GTAC 3 cut(s) 293, 1016, 1141
CviAII CATG 4 cut(s) 152, 689, 728, 945
CviQI GTAC 3 cut(s) 293, 1016, 1141
DdeI CTNAG 2 cut(s) 9, 453
DpnI GATC 6 cut(s) 62, 386, 504, 719, 1125, 1188
DpnII GATC 6 cut(s) 60, 384, 502, 717, 1123, 1186
EaeI YGGCCR 1 cut(s) 270
Eam1104I CTCTTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 68
Eco130I CCWWGG 1 cut(s) 727
Eco31I GGTCTC 1 cut(s) 91
Eco88I CYCGRG 1 cut(s) 53
EcoO109I RGGNCCY 1 cut(s) 925
EcoRII CCWGG 2 cut(s) 67, 336
EcoT14I CCWWGG 1 cut(s) 727
ErhI CCWWGG 1 cut(s) 727
FaeI CATG 4 cut(s) 155, 692, 731, 948
FaqI GGGAC 1 cut(s) 70
FatI CATG 4 cut(s) 151, 688, 727, 944
FbaI TGATCA 2 cut(s) 717, 1123
FblI GTMKAC 1 cut(s) 460
Fnu4HI GCNGC 4 cut(s) 426, 857, 888, 1058
FokI GGATG 3 cut(s) 242, 922, 980
Fsp4HI GCNGC 4 cut(s) 426, 857, 888, 1058
FspAI RTGCGCAY 1 cut(s) 680
FspBI CTAG 6 cut(s) 243, 429, 762, 785, 920, 1253
FspI TGCGCA 1 cut(s) 680
GlaI GCGC 3 cut(s) 594, 680, 818
GluI GCNGC 4 cut(s) 426, 857, 888, 1058
GsaI CCCAGC 1 cut(s) 846
GsuI CTGGAG 2 cut(s) 863, 1226
HaeIII GGCC 2 cut(s) 272, 927
HgaI GACGC 1 cut(s) 1200
HhaI GCGC 3 cut(s) 595, 681, 819
Hin1I GRCGYC 1 cut(s) 1211
Hin1II CATG 4 cut(s) 155, 692, 731, 948
Hin6I GCGC 3 cut(s) 593, 679, 817
HinP1I GCGC 3 cut(s) 593, 679, 817
HincII GTYRAC 1 cut(s) 790
HindII GTYRAC 1 cut(s) 790
HindIII AAGCTT 1 cut(s) 600
HinfI GANTC 9 cut(s) 14, 262, 360, 557, 701, 739, 971, 1115, 1249
HpaI GTTAAC 1 cut(s) 790
Hpy166II GTNNAC 4 cut(s) 434, 461, 790, 1151
Hpy188I TCNGA 5 cut(s) 393, 562, 717, 1114, 1216
Hpy188III TCNNGA 8 cut(s) 55, 531, 689, 907, 933, 1165, 1265, 1288
Hpy8I GTNNAC 4 cut(s) 434, 461, 790, 1151
Hpy99I CGWCG 1 cut(s) 125
HpyCH4III ACNGT 5 cut(s) 142, 199, 292, 344, 1140
HpyCH4IV ACGT 1 cut(s) 83
HpyCH4V TGCA 9 cut(s) 31, 151, 655, 755, 856, 890, 902, 989, 1057
HpyF10VI GCNNNNNNNGC 3 cut(s) 599, 954, 1217
HpyF3I CTNAG 2 cut(s) 9, 453
HpySE526I ACGT 1 cut(s) 83
Hsp92I GRCGYC 1 cut(s) 1211
Hsp92II CATG 4 cut(s) 155, 692, 731, 948
HspAI GCGC 3 cut(s) 593, 679, 817
Ksp22I TGATCA 2 cut(s) 717, 1123
KspAI GTTAAC 1 cut(s) 790
Kzo9I GATC 6 cut(s) 60, 384, 502, 717, 1123, 1186
LguI GCTCTTC 1 cut(s) 68
LmnI GCTCC 1 cut(s) 180
Lsp1109I GCAGC 4 cut(s) 412, 868, 874, 1069
LweI GCATC 3 cut(s) 661, 966, 1258
MaeI CTAG 6 cut(s) 243, 429, 762, 785, 920, 1253
MaeII ACGT 1 cut(s) 83
MaeIII GTNAC 1 cut(s) 4
MalI GATC 6 cut(s) 62, 386, 504, 719, 1125, 1188
MboI GATC 6 cut(s) 60, 384, 502, 717, 1123, 1186
MboII GAAGA 7 cut(s) 85, 143, 298, 557, 566, 1066, 1124
MfeI CAATTG 2 cut(s) 40, 1078
MflI RGATCY 3 cut(s) 384, 502, 1186
MlsI TGGCCA 1 cut(s) 272
MluNI TGGCCA 1 cut(s) 272
MlyI GAGTC 4 cut(s) 8, 748, 980, 1258
MmeI TCCRAC 2 cut(s) 74, 1219
Mox20I TGGCCA 1 cut(s) 272
MscI TGGCCA 1 cut(s) 272
MseI TTAA 7 cut(s) 216, 405, 438, 539, 789, 1089, 1194
Msp20I TGGCCA 1 cut(s) 272
MspCI CTTAAG 1 cut(s) 437
MspR9I CCNGG 2 cut(s) 69, 338
MunI CAATTG 2 cut(s) 40, 1078
Mva1269I GAATGC 3 cut(s) 338, 475, 902
MvaI CCWGG 2 cut(s) 69, 338
MvnI CGCG 2 cut(s) 330, 819
MwoI GCNNNNNNNGC 3 cut(s) 599, 954, 1217
NcoI CCATGG 1 cut(s) 727
NdeII GATC 6 cut(s) 60, 384, 502, 717, 1123, 1186
NlaIII CATG 4 cut(s) 155, 692, 731, 948
NlaIV GGNNCC 1 cut(s) 926
NsbI TGCGCA 1 cut(s) 680
NspI RCATGY 1 cut(s) 948
PaeI GCATGC 1 cut(s) 948
PagI TCATGA 1 cut(s) 688
PasI CCCWGGG 1 cut(s) 68
PciSI GCTCTTC 1 cut(s) 68
PctI GAATGC 3 cut(s) 338, 475, 902
PfeI GAWTC 5 cut(s) 262, 360, 557, 701, 1115
PkrI GCNGC 4 cut(s) 427, 858, 889, 1059
PleI GAGTC 4 cut(s) 8, 747, 979, 1257
PpsI GAGTC 4 cut(s) 8, 747, 979, 1257
PshBI ATTAAT 1 cut(s) 539
PsiI TTATAA 1 cut(s) 863
Psp6I CCWGG 2 cut(s) 67, 336
PspFI CCCAGC 1 cut(s) 842
PspGI CCWGG 2 cut(s) 67, 336
PspN4I GGNNCC 1 cut(s) 926
PspPI GGNCC 1 cut(s) 925
PstI CTGCAG 2 cut(s) 858, 892
PstNI CAGNNNCTG 2 cut(s) 1204, 1220
PsuI RGATCY 3 cut(s) 384, 502, 1186
RsaI GTAC 3 cut(s) 294, 1017, 1142
RsaNI GTAC 3 cut(s) 293, 1016, 1141
SapI GCTCTTC 1 cut(s) 68
SaqAI TTAA 7 cut(s) 216, 405, 438, 539, 789, 1089, 1194
SatI GCNGC 4 cut(s) 426, 857, 888, 1058
Sau3AI GATC 6 cut(s) 60, 384, 502, 717, 1123, 1186
Sau96I GGNCC 1 cut(s) 925
SchI GAGTC 4 cut(s) 8, 748, 980, 1258
ScrFI CCNGG 2 cut(s) 69, 338
SfaNI GCATC 3 cut(s) 661, 966, 1258
SfcI CTRYAG 2 cut(s) 854, 888
SmlI CTYRAG 1 cut(s) 437
SmoI CTYRAG 1 cut(s) 437
SpeI ACTAGT 1 cut(s) 761
SphI GCATGC 1 cut(s) 948
SsiI CCGC 3 cut(s) 34, 328, 750
SspMI CTAG 6 cut(s) 243, 429, 762, 785, 920, 1253
StyD4I CCNGG 2 cut(s) 67, 336
StyI CCWWGG 1 cut(s) 727
TaaI ACNGT 5 cut(s) 142, 199, 292, 344, 1140
TaiI ACGT 1 cut(s) 86
TaqII GACCGA 1 cut(s) 624
TatI WGTACW 2 cut(s) 1015, 1140
TfiI GAWTC 5 cut(s) 262, 360, 557, 701, 1115
Tru1I TTAA 7 cut(s) 216, 405, 438, 539, 789, 1089, 1194
Tru9I TTAA 7 cut(s) 216, 405, 438, 539, 789, 1089, 1194
TscAI CASTG 1 cut(s) 1126
TseI GCWGC 4 cut(s) 425, 856, 887, 1057
TspDTI ATGAA 7 cut(s) 299, 352, 482, 572, 677, 764, 1035
TspGWI ACGGA 1 cut(s) 566
TspRI CASTG 1 cut(s) 1126
Vha464I CTTAAG 1 cut(s) 437
VspI ATTAAT 1 cut(s) 539
XceI RCATGY 1 cut(s) 948
XmiI GTMKAC 1 cut(s) 460
XspI CTAG 6 cut(s) 243, 429, 762, 785, 920, 1253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.