Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0007288

Physical Location & Seq

Genomic Coordinates Forward (+)

4011273 .. 4020449

Gene Structure 9177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG048000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2334 bp

ATGGAAACCGACGAAGAAGAACAACGCGTCACTCCATTCCAGCTCCAGTTCGACAAGCCAGTCGCTTCGCAGATTAAGATCGCGGAGTGGAATCCCGAGAAGGATTTACTCGCCATGGTAACTGAGGACTCCAAGATTTTACTGCACCGCTTCAATTGGCAGAGGCTCTGGACAATCTCCCCAGGAAAGTGCATAACGTCTTTGTGTTGGAGACCTGATGGTAAAGCAATCGCTGTCGGGCTCGAAGATGGAACAGTCTCATTGCATGATGTTGAAAATGGAAAGTTGTTGAGGAGCTTGAAATCGCATACTGTGGCTGTTGTTTCTCTTAATTGGGAGGAGGATGGACAGATGACCAGAGATGAGAATGGCAGCCACTCGGTATATGAAGACCGTACATCTCGTTTCTTTCCACCACCTCCAAGAGTTCCACGAATGCCTGGACTGGTATCTGGAGAGACCGGTTTCATGGATGATAGTGAAGATTCATTTCGAGAGCTGTCAAATTCTTCACAGCAACTTTTTAATATCCTCTGCAGTGGAGATAAAGATGGATTCATTTGCTTTAGTATATTTGGGATCTTTCCGATAGGGAAAATTAACATACACAACTTTGGTGCTGCTAGTCCACTTAAGGATACTGAAGCTGAGTGTAGACTTCTGAATGCTTCTGTTTACAAGGTTGCTTTGTCAAAAGATCTTTGTCATTTGGTAGTCATGTGTTCAGGAGAATTAATTGAAGATAGGGAAGAATCAGAAAACAGGCAGATGACTGAACCTGGTATGCATGGCTTACATTGCATAGTGCTTGATACATCTATATTTTGGAAGAGAAAAAGTGAGCTTCATCAAGTGGCGCAACAAGCTTCTAACATTGAGGAATTGGCAGAGGTTATTCGGTCATCAATTTCAGTTATGCACAAGGAGTGGTCTGATGCTATGCGCACTTTTCATGACAAGTTTGATTCTCTGTCCAATCTGATCATAGACCATGGACTCCAGTCCTCTCCCCAAGAGGAGTTTTTGAGTCTTTTAGGCGGTGCAAGGACTAGTCCAGCAGTTCATCAGTTTCTAGTTAACTCTCTCGGTGAAGTGGGCGTGAAGCGCGTGTCAAAGGCTGTTTGTGGTGCTGGGAAAGAAGTGCAGCTTATAATCCTAAATCATCTCCAGCCTGCTGCAGAAATTATCGCATTCAGGATGGGAGAACTAAGAGGCCTTTCAAGATGGAGAGCACGCTATCAGGGCATCGGTTTGGATGAGACGCTTATCAATAATGCAACAGAAAAATCTGGAATGATACTTGTACAAGTTGAACGGTTTATCAGGGTGCTTTCATCTGTGGTGCAGCAGTTTTCAAACTTCTTCAATTGGCTCTTGAAGTGTATAAAGTTACTCAATTCAGAACCCAGTGATCATCATCTTCTACTGTACAATAGTGAACTTGTTGTTATATTCTTGAAGTTTCTATATGACCAAGATCCTGTTAAGCAGTTGCTGGAGGCGTCGGAAGCTGATGAGAGTATCGAAGTTGGATTGGAAACAGTGCAGAGAGTTAGAGAATTAGTTCAGTTTGGGGGATTTTCAGATTGTGAGCACCTGCAGAGGACGTTAGCCAAGGAATTTCAGCAGATGGAGTCTAGTTTTAAGGAGGCTTTTCAGATGCCCTTTACTACAATTTCAAGAAAGATAATCTGTGAAGATTCATTGCCACTTTGCCCACTGCCACCTTCGTCAGCATCTTTGTCTACCAGTATTCCTATGTCAGTATCATATTATGAGGATGCCTCCCATTCCGTCCCTCATCAGACTCGTCAACATATGTTTCTTGACTACATCTCTTTCCATATACCAGATGAGTCCTTCTCTGGTATGGAAAATTGTATAGGCATAGTGAGGGGGATTATGCATGACTCAAGCATTGTAAAGAGGGGTTATACTTCAGTAGAAGCTGTACTGTTGTGCATCCCTGTTGGTTATTACTGTGTGGATCTTTCTTTATATAAGGAAAGTCAGATTGTTTTATTATTAAATGAAACAACTACCACTTCTGAAAGCTCTGGTGATGCCTGTATGATGATTGTGCAAGCAAATGACCTTCCATTTGTATCTATCACAAGATCCACTAGTCTAAACTATTGGGACTTGCATCAACTGAAGGACTCTGTTGTTCACTTGCAAATGGAGAACGAGAAGGTTCGCAGTATACCGCATTCTGTTATTGCTCCTCTAGCAGTTAGCTCATCAAGAGGTGTGGCTTGTGTTTTTGCTGCAAGAAAGCGTGCCTTGGTCTACATTCTGGAGGAAGATGAAGATGAAGTTTCTGATTCAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC4 ANAPC4_WD40

Protein Analysis

777

Amino Acids

87.4

Weight (kDa)

5.15

Isoelectric Point (pI)

49.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_EML_2	PF23414	20 - 124	1.5e-08	Echinoderm microtubule-associated protein second beta-propeller
WD40_WDHD1_1st	PF24817	22 - 116	1.2e-08	WDHD1 first WD40 domain
Beta-prop_WDR19_1st	PF23389	22 - 118	4.2e-07	WDR19 first beta-propeller
WD40_Prp19	PF24814	23 - 116	1.2e-07	Prp19 WD40 domain
Beta-prop_WDR35_TULP_N	PF24797	23 - 116	8.6e-07	WDR35/TULP4 N-terminal
Beta-prop_THOC3	PF25174	24 - 120	1.5e-10	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	26 - 118	8.3e-09	WDR5 beta-propeller domain
WD40_CDC20-Fz	PF24807	27 - 134	2.1e-11	CDC20/Fizzy WD40 domain
WDR55	PF24796	27 - 134	3.6e-06	WDR55
ANAPC4_WD40	PF12894	29 - 114	3.9e-29	Anaphase-promoting complex subunit 4 WD40 domain
Beta-prop_WDR3_2nd	PF25172	34 - 118	8.6e-06	WDR3 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	63 - 118	6.4e-08	WDR3 first beta-propeller domain
ANAPC4	PF12896	266 - 468	1.1e-56	Anaphase-promoting complex, cyclosome, subunit 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21530
fragaria_vesca	FvH4_3g04050 FvH4_3g04050 FvH4_3g04050
malus_domestica	MD10G1303000.v1.1
prunus_persica	Prupe.4G036500_v2.0.a1 Prupe.4G036500_v2.0.a1 Prupe.4G036500_v2.0.a1 Prupe.4G036500_v2.0.a1 Prupe.4G036500_v2.0.a1 Prupe.4G036500_v2.0.a1
pyrus_communis	pycom10g25560
rosa_chinensis	RchiOBHm_Chr5g0006531
rosa_laevigata	RLG00000031396 RLG00000034652
rosa_multiflora	Rmu_sc0008991.1_g000016
rosa_roxburghii	Rroxscaffold_1G00031790 Rroxscaffold_1G00069530
rosa_rugosa	Rorug04G0421700
rosa_samantha	Rh5AG049400 Rh5BG048700 Rh5CG057000 Rh5DG048000
rosa_wichuraiana	Rw5G004950 Rw5G030980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1151
AarI	CACCTGC	1 cut(s)	1605
AasI	GACNNNNNNGTC	1 cut(s)	59
Acc16I	TGCGCA	1 cut(s)	944
Acc36I	ACCTGC	1 cut(s)	1605
AccI	GTMKAC	4 cut(s)	655, 1745, 2203, 2289
AccII	CGCG	3 cut(s)	27, 83, 1107
AciI	CCGC	4 cut(s)	83, 148, 1038, 2207
AclWI	GGATC	4 cut(s)	587, 1472, 1995, 2112
AcsI	RAATTY	2 cut(s)	505, 1619
AcuI	CTGAAG	3 cut(s)	663, 1923, 2174
AcyI	GRCGYC	1 cut(s)	1502
AfaI	GTAC	4 cut(s)	397, 1305, 1430, 1953
AflII	CTTAAG	1 cut(s)	632
AflIII	ACRYGT	1 cut(s)	25
AgeI	ACCGGT	1 cut(s)	461
AhlI	ACTAGT	2 cut(s)	1049, 2123
AjnI	CCWGG	3 cut(s)	181, 439, 778
Alw21I	GWGCWC	2 cut(s)	1234, 1596
Alw26I	GTCTC	4 cut(s)	205, 262, 452, 1253
AlwI	GGATC	4 cut(s)	587, 1472, 1995, 2112
AlwNI	CAGNNNCTG	1 cut(s)	1495
Ama87I	CYCGRG	1 cut(s)	95
AoxI	GGCC	1 cut(s)	1213
ApeKI	GCWGC	6 cut(s)	372, 620, 1144, 1175, 1345, 2267
ApoI	RAATTY	2 cut(s)	505, 1619
ArsI	GACNNNNNNTTYG	2 cut(s)	2084, 2116
AseI	ATTAAT	1 cut(s)	734
AsiGI	ACCGGT	1 cut(s)	461
Asp700I	GAANNNNTTC	1 cut(s)	1563
AspLEI	GCGC	3 cut(s)	859, 945, 1107
AsuHPI	GGTGA	2 cut(s)	1100, 2072
AvaI	CYCGRG	1 cut(s)	95
BanII	GRGCYC	1 cut(s)	243
BbsI	GAAGAC	1 cut(s)	396
Bbv12I	GWGCWC	2 cut(s)	1234, 1596
BbvI	GCAGC	6 cut(s)	384, 607, 1156, 1162, 1357, 2254
BccI	CCATC	7 cut(s)	212, 242, 338, 545, 1192, 1218, 1624
BciT130I	CCWGG	3 cut(s)	183, 441, 780
BciVI	GTATCC	1 cut(s)	631
BclI	TGATCA	2 cut(s)	981, 1411
BcoDI	GTCTC	4 cut(s)	205, 262, 452, 1253
BcuI	ACTAGT	2 cut(s)	1049, 2123
BfaI	CTAG	6 cut(s)	624, 1050, 1073, 1638, 2124, 2228
BfmI	CTRYAG	3 cut(s)	535, 1176, 1598
BfrI	CTTAAG	1 cut(s)	632
BfuAI	ACCTGC	1 cut(s)	1605
BfuI	GTATCC	1 cut(s)	631
BglII	AGATCT	1 cut(s)	697
BisI	GCNGC	6 cut(s)	373, 621, 1145, 1176, 1346, 2268
BlsI	GCNGC	6 cut(s)	374, 622, 1146, 1177, 1347, 2269
Bme1390I	CCNGG	3 cut(s)	183, 441, 780
BmeT110I	CYCGRG	1 cut(s)	95
BmrFI	CCNGG	3 cut(s)	183, 441, 780
BmrI	ACTGGG	1 cut(s)	1401
BmsI	GCATC	8 cut(s)	925, 1254, 1650, 1745, 1771, 1971, 2053, 2155
BmuI	ACTGGG	1 cut(s)	1401
BoxI	GACNNNNGTC	1 cut(s)	1000
BpiI	GAAGAC	1 cut(s)	396
BplI	GAGNNNNNCTC	4 cut(s)	1769, 1801, 1847, 1879
BpmI	CTGGAG	6 cut(s)	29, 474, 983, 1151, 1517, 2318
BpuEI	CTTGAG	1 cut(s)	1897
BsaBI	GATNNNNATC	2 cut(s)	77, 1416
BsaHI	GRCGYC	1 cut(s)	1502
BsaI	GGTCTC	2 cut(s)	205, 452
BsaJI	CCNNGG	5 cut(s)	114, 181, 991, 1614, 2283
BsaWI	WCCGGW	1 cut(s)	461
Bse118I	RCCGGY	1 cut(s)	461
Bse1I	ACTGG	6 cut(s)	46, 59, 450, 1000, 1407, 1749
Bse3DI	GCAATG	3 cut(s)	260, 796, 1703
Bse8I	GATNNNNATC	2 cut(s)	77, 1416
BseBI	CCWGG	3 cut(s)	183, 441, 780
BseDI	CCNNGG	5 cut(s)	114, 181, 991, 1614, 2283
BseGI	GGATG	6 cut(s)	349, 478, 1203, 1261, 1786, 1962
BseJI	GATNNNNATC	2 cut(s)	77, 1416
BseMI	GCAATG	3 cut(s)	260, 796, 1703
BseMII	CTCAG	2 cut(s)	114, 639
BseNI	ACTGG	6 cut(s)	46, 59, 450, 1000, 1407, 1749
BseRI	GAGGAG	4 cut(s)	307, 353, 1031, 2214
BseXI	GCAGC	6 cut(s)	384, 607, 1156, 1162, 1357, 2254
BseYI	CCCAGC	1 cut(s)	1130
BsgI	GTGCAG	4 cut(s)	128, 1163, 1364, 1565
Bsh1236I	CGCG	3 cut(s)	27, 83, 1107
BshFI	GGCC	1 cut(s)	1215
BshTI	ACCGGT	1 cut(s)	461
BsiHKAI	GWGCWC	2 cut(s)	1234, 1596
BsiHKCI	CYCGRG	1 cut(s)	95
BsiSI	CCGG	1 cut(s)	462
BslFI	GGGAC	2 cut(s)	1781, 2153
BsmAI	GTCTC	4 cut(s)	205, 262, 452, 1253
BsmBI	CGTCTC	1 cut(s)	1253
BsmFI	GGGAC	2 cut(s)	1781, 2153
BsmI	GAATGC	4 cut(s)	441, 670, 1190, 2209
BsnI	GGCC	1 cut(s)	1215
Bso31I	GGTCTC	2 cut(s)	205, 452
BsoBI	CYCGRG	1 cut(s)	95
Bsp1286I	GDGCHC	3 cut(s)	243, 1234, 1596
Bsp1407I	TGTACA	2 cut(s)	1303, 1428
Bsp143I	GATC	8 cut(s)	78, 579, 697, 981, 1411, 1477, 1987, 2117
Bsp19I	CCATGG	2 cut(s)	114, 991
BspACI	CCGC	4 cut(s)	83, 148, 1038, 2207
BspANI	GGCC	1 cut(s)	1215
BspCNI	CTCAG	2 cut(s)	115, 640
BspFNI	CGCG	3 cut(s)	27, 83, 1107
BspHI	TCATGA	1 cut(s)	952
BspMAI	CTGCAG	3 cut(s)	539, 1180, 1602
BspMI	ACCTGC	1 cut(s)	1605
BspPI	GGATC	4 cut(s)	587, 1472, 1995, 2112
BspTI	CTTAAG	1 cut(s)	632
BspTNI	GGTCTC	2 cut(s)	205, 452
BsrDI	GCAATG	3 cut(s)	260, 796, 1703
BsrFI	RCCGGY	1 cut(s)	461
BsrGI	TGTACA	2 cut(s)	1303, 1428
BsrI	ACTGG	6 cut(s)	46, 59, 450, 1000, 1407, 1749
BssAI	RCCGGY	1 cut(s)	461
BssECI	CCNNGG	5 cut(s)	114, 181, 991, 1614, 2283
BssMI	GATC	8 cut(s)	78, 579, 697, 981, 1411, 1477, 1987, 2117
BssNAI	GTATAC	1 cut(s)	2204
BssNI	GRCGYC	1 cut(s)	1502
BssT1I	CCWWGG	4 cut(s)	114, 991, 1614, 2283
Bst1107I	GTATAC	1 cut(s)	2204
Bst2UI	CCWGG	3 cut(s)	183, 441, 780
Bst4CI	ACNGT	8 cut(s)	256, 313, 395, 1317, 1428, 1543, 1956, 1982
Bst6I	CTCTTC	1 cut(s)	824
BstACI	GRCGYC	1 cut(s)	1502
BstAFI	CTTAAG	1 cut(s)	632
BstAUI	TGTACA	2 cut(s)	1303, 1428
BstC8I	GCNNGC	4 cut(s)	1173, 1234, 2085, 2280
BstDEI	CTNAG	3 cut(s)	123, 648, 1208
BstDSI	CCRYGG	2 cut(s)	114, 991
BstF5I	GGATG	6 cut(s)	349, 478, 1203, 1261, 1786, 1962
BstFNI	CGCG	3 cut(s)	27, 83, 1107
BstHHI	GCGC	3 cut(s)	859, 945, 1107
BstKTI	GATC	8 cut(s)	81, 582, 700, 984, 1414, 1480, 1990, 2120
BstMAI	GTCTC	4 cut(s)	205, 262, 452, 1253
BstMBI	GATC	8 cut(s)	78, 579, 697, 981, 1411, 1477, 1987, 2117
BstMWI	GCNNNNNNNGC	6 cut(s)	798, 863, 1104, 1242, 1508, 2228
BstNI	CCWGG	3 cut(s)	183, 441, 780
BstPAI	GACNNNNGTC	1 cut(s)	1000
BstSCI	CCNGG	3 cut(s)	181, 439, 778
BstSFI	CTRYAG	3 cut(s)	535, 1176, 1598
BstUI	CGCG	3 cut(s)	27, 83, 1107
BstV1I	GCAGC	6 cut(s)	384, 607, 1156, 1162, 1357, 2254
BstV2I	GAAGAC	1 cut(s)	396
BstX2I	RGATCY	5 cut(s)	579, 697, 1477, 1987, 2117
BstYI	RGATCY	5 cut(s)	579, 697, 1477, 1987, 2117
BstZ17I	GTATAC	1 cut(s)	2204
BsuI	GTATCC	1 cut(s)	631
BsuRI	GGCC	1 cut(s)	1215
BtgI	CCRYGG	2 cut(s)	114, 991
BtsCI	GGATG	6 cut(s)	349, 478, 1203, 1261, 1786, 1962
BtsI	GCAGTG	2 cut(s)	544, 1718
BtsIMutI	CAGTG	4 cut(s)	544, 1414, 1548, 1718
BveI	ACCTGC	1 cut(s)	1605
Cac8I	GCNNGC	4 cut(s)	1173, 1234, 2085, 2280
CaiI	CAGNNNCTG	1 cut(s)	1495
CciI	TCATGA	1 cut(s)	952
CfoI	GCGC	3 cut(s)	859, 945, 1107
Cfr10I	RCCGGY	1 cut(s)	461
CseI	GACGC	3 cut(s)	16, 1270, 1491
CsiI	ACCWGGT	1 cut(s)	778
Csp6I	GTAC	4 cut(s)	396, 1304, 1429, 1952
CspAI	ACCGGT	1 cut(s)	461
CspCI	CAANNNNNGTGG	2 cut(s)	2232, 2267
CviAII	CATG	8 cut(s)	115, 266, 469, 718, 788, 953, 992, 1907
CviQI	GTAC	4 cut(s)	396, 1304, 1429, 1952
DdeI	CTNAG	3 cut(s)	123, 648, 1208
DpnI	GATC	8 cut(s)	80, 581, 699, 983, 1413, 1479, 1989, 2119
DpnII	GATC	8 cut(s)	78, 579, 697, 981, 1411, 1477, 1987, 2117
DrdI	GACNNNNNNGTC	1 cut(s)	59
DseDI	GACNNNNNNGTC	1 cut(s)	59
Eam1104I	CTCTTC	1 cut(s)	824
EarI	CTCTTC	1 cut(s)	824
Eco130I	CCWWGG	4 cut(s)	114, 991, 1614, 2283
Eco147I	AGGCCT	1 cut(s)	1215
Eco24I	GRGCYC	1 cut(s)	243
Eco31I	GGTCTC	2 cut(s)	205, 452
Eco57I	CTGAAG	3 cut(s)	663, 1923, 2174
Eco88I	CYCGRG	1 cut(s)	95
EcoRII	CCWGG	3 cut(s)	181, 439, 778
EcoT14I	CCWWGG	4 cut(s)	114, 991, 1614, 2283
EcoT22I	ATGCAT	2 cut(s)	789, 1908
EcoT38I	GRGCYC	1 cut(s)	243
ErhI	CCWWGG	4 cut(s)	114, 991, 1614, 2283
Esp3I	CGTCTC	1 cut(s)	1253
FaeI	CATG	8 cut(s)	118, 269, 472, 721, 791, 956, 995, 1910
FalI	AAGNNNNNCTT	4 cut(s)	1131, 1163, 2267, 2299
FaqI	GGGAC	2 cut(s)	1781, 2153
FatI	CATG	8 cut(s)	114, 265, 468, 717, 787, 952, 991, 1906
FauNDI	CATATG	1 cut(s)	1818
FbaI	TGATCA	2 cut(s)	981, 1411
FblI	GTMKAC	4 cut(s)	655, 1745, 2203, 2289
Fnu4HI	GCNGC	6 cut(s)	373, 621, 1145, 1176, 1346, 2268
FokI	GGATG	6 cut(s)	356, 485, 1210, 1268, 1793, 1949
FriOI	GRGCYC	1 cut(s)	243
Fsp4HI	GCNGC	6 cut(s)	373, 621, 1145, 1176, 1346, 2268
FspAI	RTGCGCAY	1 cut(s)	944
FspBI	CTAG	6 cut(s)	624, 1050, 1073, 1638, 2124, 2228
FspI	TGCGCA	1 cut(s)	944
GlaI	GCGC	3 cut(s)	858, 944, 1106
GluI	GCNGC	6 cut(s)	373, 621, 1145, 1176, 1346, 2268
GsaI	CCCAGC	1 cut(s)	1134
GsuI	CTGGAG	6 cut(s)	29, 474, 983, 1151, 1517, 2318
HaeIII	GGCC	1 cut(s)	1215
HapII	CCGG	1 cut(s)	462
HgaI	GACGC	3 cut(s)	16, 1270, 1491
HhaI	GCGC	3 cut(s)	859, 945, 1107
Hin1I	GRCGYC	1 cut(s)	1502
Hin1II	CATG	8 cut(s)	118, 269, 472, 721, 791, 956, 995, 1910
Hin6I	GCGC	3 cut(s)	857, 943, 1105
HinP1I	GCGC	3 cut(s)	857, 943, 1105
HincII	GTYRAC	2 cut(s)	1078, 1814
HindII	GTYRAC	2 cut(s)	1078, 1814
HindIII	AAGCTT	1 cut(s)	864
HpaI	GTTAAC	1 cut(s)	1078
HpaII	CCGG	1 cut(s)	462
HphI	GGTGA	2 cut(s)	1100, 2072
Hpy99I	CGWCG	2 cut(s)	14, 1507
HpyAV	CCTTC	6 cut(s)	94, 1737, 1870, 2105, 2149, 2185
HpyCH4III	ACNGT	8 cut(s)	256, 313, 395, 1317, 1428, 1543, 1956, 1982
HpyCH4IV	ACGT	2 cut(s)	197, 1607
HpyF10VI	GCNNNNNNNGC	6 cut(s)	798, 863, 1104, 1242, 1508, 2228
HpyF3I	CTNAG	3 cut(s)	123, 648, 1208
HpySE526I	ACGT	2 cut(s)	197, 1607
Hsp92I	GRCGYC	1 cut(s)	1502
Hsp92II	CATG	8 cut(s)	118, 269, 472, 721, 791, 956, 995, 1910
HspAI	GCGC	3 cut(s)	857, 943, 1105
Ksp22I	TGATCA	2 cut(s)	981, 1411
KspAI	GTTAAC	1 cut(s)	1078
Kzo9I	GATC	8 cut(s)	78, 579, 697, 981, 1411, 1477, 1987, 2117
LmnI	GCTCC	3 cut(s)	48, 294, 2227
Lsp1109I	GCAGC	6 cut(s)	384, 607, 1156, 1162, 1357, 2254
LweI	GCATC	8 cut(s)	925, 1254, 1650, 1745, 1771, 1971, 2053, 2155
MabI	ACCWGGT	1 cut(s)	778
MaeI	CTAG	6 cut(s)	624, 1050, 1073, 1638, 2124, 2228
MaeII	ACGT	2 cut(s)	197, 1607
MaeIII	GTNAC	3 cut(s)	28, 118, 1389
MalI	GATC	8 cut(s)	80, 581, 699, 983, 1413, 1479, 1989, 2119
MboI	GATC	8 cut(s)	78, 579, 697, 981, 1411, 1477, 1987, 2117
MfeI	CAATTG	2 cut(s)	154, 1366
MflI	RGATCY	5 cut(s)	579, 697, 1477, 1987, 2117
MhlI	GDGCHC	3 cut(s)	243, 1234, 1596
MluI	ACGCGT	1 cut(s)	25
MlyI	GAGTC	8 cut(s)	122, 990, 1036, 1643, 1801, 1865, 1904, 2153
MmeI	TCCRAC	3 cut(s)	188, 1485, 1510
Mph1103I	ATGCAT	2 cut(s)	789, 1908
MroXI	GAANNNNTTC	1 cut(s)	1563
MspCI	CTTAAG	1 cut(s)	632
MspI	CCGG	1 cut(s)	462
MspR9I	CCNGG	3 cut(s)	183, 441, 780
MunI	CAATTG	2 cut(s)	154, 1366
Mva1269I	GAATGC	4 cut(s)	441, 670, 1190, 2209
MvaI	CCWGG	3 cut(s)	183, 441, 780
MvnI	CGCG	3 cut(s)	27, 83, 1107
MwoI	GCNNNNNNNGC	6 cut(s)	798, 863, 1104, 1242, 1508, 2228
NcoI	CCATGG	2 cut(s)	114, 991
NdeI	CATATG	1 cut(s)	1818
NdeII	GATC	8 cut(s)	78, 579, 697, 981, 1411, 1477, 1987, 2117
NlaIII	CATG	8 cut(s)	118, 269, 472, 721, 791, 956, 995, 1910
NmuCI	GTSAC	1 cut(s)	28
NsbI	TGCGCA	1 cut(s)	944
NsiI	ATGCAT	2 cut(s)	789, 1908
PagI	TCATGA	1 cut(s)	952
PaqCI	CACCTGC	1 cut(s)	1605
PceI	AGGCCT	1 cut(s)	1215
PctI	GAATGC	4 cut(s)	441, 670, 1190, 2209
PdmI	GAANNNNTTC	1 cut(s)	1563
PfeI	GAWTC	7 cut(s)	91, 485, 555, 752, 965, 1700, 2324
PinAI	ACCGGT	1 cut(s)	461
PkrI	GCNGC	6 cut(s)	374, 622, 1146, 1177, 1347, 2269
PleI	GAGTC	8 cut(s)	122, 990, 1035, 1642, 1801, 1864, 1904, 2153
PpsI	GAGTC	8 cut(s)	122, 990, 1035, 1642, 1801, 1864, 1904, 2153
PshAI	GACNNNNGTC	1 cut(s)	1000
PshBI	ATTAAT	1 cut(s)	734
PsiI	TTATAA	1 cut(s)	1151
Psp6I	CCWGG	3 cut(s)	181, 439, 778
PspFI	CCCAGC	1 cut(s)	1130
PspGI	CCWGG	3 cut(s)	181, 439, 778
PstI	CTGCAG	3 cut(s)	539, 1180, 1602
PstNI	CAGNNNCTG	1 cut(s)	1495
PsuI	RGATCY	5 cut(s)	579, 697, 1477, 1987, 2117
RsaI	GTAC	4 cut(s)	397, 1305, 1430, 1953
RsaNI	GTAC	4 cut(s)	396, 1304, 1429, 1952
SatI	GCNGC	6 cut(s)	373, 621, 1145, 1176, 1346, 2268
Sau3AI	GATC	8 cut(s)	78, 579, 697, 981, 1411, 1477, 1987, 2117
SchI	GAGTC	8 cut(s)	122, 990, 1036, 1643, 1801, 1865, 1904, 2153
ScrFI	CCNGG	3 cut(s)	183, 441, 780
SduI	GDGCHC	3 cut(s)	243, 1234, 1596
SexAI	ACCWGGT	1 cut(s)	778
SfaNI	GCATC	8 cut(s)	925, 1254, 1650, 1745, 1771, 1971, 2053, 2155
SfcI	CTRYAG	3 cut(s)	535, 1176, 1598
SmlI	CTYRAG	2 cut(s)	632, 1912
SmoI	CTYRAG	2 cut(s)	632, 1912
SpeI	ACTAGT	2 cut(s)	1049, 2123
SseBI	AGGCCT	1 cut(s)	1215
SsiI	CCGC	4 cut(s)	83, 148, 1038, 2207
SspMI	CTAG	6 cut(s)	624, 1050, 1073, 1638, 2124, 2228
StuI	AGGCCT	1 cut(s)	1215
StyD4I	CCNGG	3 cut(s)	181, 439, 778
StyI	CCWWGG	4 cut(s)	114, 991, 1614, 2283
TaaI	ACNGT	8 cut(s)	256, 313, 395, 1317, 1428, 1543, 1956, 1982
TaiI	ACGT	2 cut(s)	200, 1610
TaqI	TCGA	4 cut(s)	51, 243, 493, 1524
TaqII	GACCGA	1 cut(s)	888
TatI	WGTACW	3 cut(s)	1303, 1428, 1951
TfiI	GAWTC	7 cut(s)	91, 485, 555, 752, 965, 1700, 2324
TscAI	CASTG	4 cut(s)	544, 1414, 1548, 1725
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	6 cut(s)	372, 620, 1144, 1175, 1345, 2267
Tsp45I	GTSAC	1 cut(s)	28
TspGWI	ACGGA	1 cut(s)	1783
TspRI	CASTG	4 cut(s)	544, 1414, 1548, 1725
Vha464I	CTTAAG	1 cut(s)	632
VspI	ATTAAT	1 cut(s)	734
XapI	RAATTY	2 cut(s)	505, 1619
XmiI	GTMKAC	4 cut(s)	655, 1745, 2203, 2289
XmnI	GAANNNNTTC	1 cut(s)	1563
XspI	CTAG	6 cut(s)	624, 1050, 1073, 1638, 2124, 2228
Zsp2I	ATGCAT	2 cut(s)	789, 1908

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.