Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007288

Physical Location & Seq

Genomic Coordinates Forward (+)

58157126 .. 58161921

Gene Structure 4796 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0421700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1797 bp

ATGGCGTTGAGATCGGGCGGCCGGAAGCTCTCGTTCGAGATTCTGAGCAGGAACAGCTCCCCCGAAGAAGAAGAAGAAGCCGGACTCTTCTACCGATCCAACTCAGATCCAATCCGATCGAGCCACGACGCCTCCGACGATCACAAGCCCGCCGCCGCGCGAAGAAAACGCAAGAAGAAGAAGAGGACCGTCGCGAACTGCTCCATACCGGAGAGCCCCACCGCCGCGGAGGACGACGCCGTTAAGAACGACGTGATTAACGGATTGGAATTCAATTATAGCCAGACGGTGCTGTGCTCCGTCACGACGGAGGTCGTCAGCGACCCGGAGTTCCAGAATCATTTTGGCGCGCCCGAATTGAGGCAGAGGACTGTCAATGCCGGCGCCGGAGGAGGAGTTGTGGGCGAAACGACGCCGTCCGTTGCTTTAGAAGGTGAGGCCAATGCAAAGGAGGAGAGTGGCGTCGAGGCCGCGGTGGCCAAGCCGAATGGTAATTTGGTTACGAAATTGCAGAGCGCCGAGTCGTTAGATTGGCAGCGGGTCATGGCCGAAGATCCGAATTATATGTTTTCAGTGGACAAGTCTCCACTGAAGTACTTCATGGAAGAAATGTCTAATGGGAATTCATTAAGGAGCACAACAACCCTTGGAAATGAGAAAGAAAGAGAGAGGGTTTATGATACTATCTTTCGCTTACCTTGGAGATGTGAATTGCTGATAGATGTTGGCTTTTTCGTGTGTCTTGATTCGTTTCTCTCGCTGTTGACTATCATGCCAACAAGACTTTTGATGACCCTTTGGAGGCTTGTGCAAACAAGGCAGTTTAAGAGGCCATCTGCAGCAGAGCTGTCTGATTTTGGGTGTTTTACGATAATGGCTTGTGGTGTCATTCTTTTGGAGCAAACAGATATCAGCTTAATATATCACATGATTCGTGGTCAAGGAACAATCAAATTGTATGTGGTGTACAATGTCTTGGAGATATTTGACAAACTATGTCAAAGTTTTAATGGAGATGTATTGCAAACTCTATTTAATTCGGCAGACGGACTTGCTAGCTGTCCAACAGAAAACATGAGATTCTGGATTTGGAGATTTACTTGCGACCAAGCTTTAGCCGTGACTGCCTCAATTATTCATTCGTTTATCCTCTTAGCTCAGGCGATTACTTTGTCAACCTGCATTGTTGCTCACAATAATGCCTTGTTCGCTTTGTTGGTGTCCAATAACTTTGCCGAGATAAAAAGCAACGTGTTCAAGCGATATAGTAAGGAAAACATTCATAGCCTGGTATACTTTGATTCAGTGGAGAGATTCCACATTTCTGCATTTATTATATTCATCCTAGCTCAAAACATTCTGGAGGCTGAGGGTCCCTGGTTTGAAAGTTTTCTTTTTAACGCTGGTGTGGTATTCGTCTGTGAAATGATTATTGATATCGTAAAGCACTCGTTCATTGCTAAGTTCAATGACATAAAGCCCATTGCATACTCTGAGTTTCTTGAAGACCTATGCAAGCAGACTTTAAATATACAACCAGAGAACGCAAAGAAAAATCTCACATTTATTCCCCTAGCACCAGCCTGTGTGGTCATCCGAGTGCTTACTCCAGTATATGCTGCGCACCTTCCATGCAGTCCCTTACCATGGAAACTCTTTTGGATTCTTGTCCTCTTTGCAATGAACTATGTTATGCTGACAAGCCTCAAGGTGTTGGTAGGCATGGGCCTCCAGAAACATGCCAGTTGGTACGTTAATAGGTGCAGAAAGAGGAAACATCATCTACATTATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC4 ANAPC4_WD40

Protein Analysis

598

Amino Acids

67.45

Weight (kDa)

6.42

Isoelectric Point (pI)

46.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF747	PF05346	280 - 585	2.3e-94	Eukaryotic membrane protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21530
fragaria_vesca	FvH4_3g04050 FvH4_3g04050 FvH4_3g04050
malus_domestica	MD10G1303000.v1.1
prunus_persica	Prupe.4G036500_v2.0.a1 Prupe.4G036500_v2.0.a1 Prupe.4G036500_v2.0.a1 Prupe.4G036500_v2.0.a1 Prupe.4G036500_v2.0.a1 Prupe.4G036500_v2.0.a1
pyrus_communis	pycom10g25560
rosa_chinensis	RchiOBHm_Chr5g0006531
rosa_laevigata	RLG00000031396 RLG00000034652
rosa_multiflora	Rmu_sc0008991.1_g000016
rosa_roxburghii	Rroxscaffold_1G00031790 Rroxscaffold_1G00069530
rosa_rugosa	Rorug04G0421700
rosa_samantha	Rh5AG049400 Rh5BG048700 Rh5CG057000 Rh5DG048000
rosa_wichuraiana	Rw5G004950 Rw5G030980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1623
Acc36I	ACCTGC	1 cut(s)	1187
AccB1I	GGYRCC	1 cut(s)	383
AccI	GTMKAC	1 cut(s)	1293
AccII	CGCG	6 cut(s)	158, 160, 194, 227, 350, 473
AclWI	GGATC	3 cut(s)	90, 101, 548
AcoI	YGGCCR	3 cut(s)	19, 477, 546
AcsI	RAATTY	2 cut(s)	269, 622
AcuI	CTGAAG	1 cut(s)	611
AcyI	GRCGYC	5 cut(s)	129, 237, 384, 413, 462
AfaI	GTAC	3 cut(s)	596, 968, 1751
AfiI	CCNNNNNNNGG	3 cut(s)	360, 801, 1647
AflIII	ACRYGT	1 cut(s)	1251
AgsI	TTSAA	5 cut(s)	274, 1258, 1385, 1468, 1505
AjiI	CACGTC	1 cut(s)	253
AjnI	CCWGG	2 cut(s)	1287, 1376
AjuI	GAANNNNNNNTTGG	2 cut(s)	479, 511
AluBI	AGCT	8 cut(s)	28, 57, 847, 915, 1059, 1112, 1157, 1349
AluI	AGCT	8 cut(s)	28, 57, 847, 915, 1059, 1112, 1157, 1349
Alw21I	GWGCWC	2 cut(s)	299, 638
Alw26I	GTCTC	1 cut(s)	588
AlwI	GGATC	3 cut(s)	90, 101, 548
AoxI	GGCC	7 cut(s)	19, 438, 468, 477, 546, 830, 1726
ApeKI	GCWGC	3 cut(s)	535, 839, 1619
ApoI	RAATTY	2 cut(s)	269, 622
AscI	GGCGCGCC	1 cut(s)	348
Asp700I	GAANNNNTTC	3 cut(s)	596, 1278, 1389
AspLEI	GCGC	6 cut(s)	160, 350, 352, 386, 518, 1624
AspS9I	GGNCC	3 cut(s)	186, 1373, 1726
AsuC2I	CCSGG	1 cut(s)	326
AsuHPI	GGTGA	1 cut(s)	446
AsuNHI	GCTAGC	1 cut(s)	1055
AvaII	GGWCC	2 cut(s)	186, 1373
BalI	TGGCCA	1 cut(s)	479
BanI	GGYRCC	1 cut(s)	383
BanII	GRGCYC	1 cut(s)	218
BbsI	GAAGAC	1 cut(s)	1512
Bbv12I	GWGCWC	2 cut(s)	299, 638
BbvCI	CCTCAGC	1 cut(s)	1368
BbvI	GCAGC	3 cut(s)	547, 851, 1606
BccI	CCATC	1 cut(s)	841
BceAI	ACGGC	3 cut(s)	224, 400, 1103
BciT130I	CCWGG	2 cut(s)	1289, 1378
BcnI	CCSGG	1 cut(s)	326
BcoDI	GTCTC	1 cut(s)	588
BfaI	CTAG	3 cut(s)	1056, 1346, 1574
BfmI	CTRYAG	1 cut(s)	837
BfoI	RGCGCY	2 cut(s)	387, 519
BfuAI	ACCTGC	1 cut(s)	1187
BglI	GCCNNNNNGGC	1 cut(s)	476
BisI	GCNGC	8 cut(s)	19, 153, 156, 225, 471, 536, 840, 1620
BlsI	GCNGC	8 cut(s)	20, 154, 157, 226, 472, 537, 841, 1621
BmcAI	AGTACT	1 cut(s)	596
Bme1390I	CCNGG	3 cut(s)	326, 1289, 1378
Bme18I	GGWCC	2 cut(s)	186, 1373
BmgBI	CACGTC	1 cut(s)	253
BmgT120I	GGNCC	3 cut(s)	186, 1373, 1726
BmiI	GGNNCC	3 cut(s)	385, 1374, 1375
BmrFI	CCNGG	3 cut(s)	326, 1289, 1378
BmtI	GCTAGC	1 cut(s)	1059
BoxI	GACNNNNGTC	1 cut(s)	311
BpiI	GAAGAC	1 cut(s)	1512
BpmI	CTGGAG	3 cut(s)	1382, 1593, 1715
Bpu10I	CCTNAGC	2 cut(s)	1158, 1368
BpuEI	CTTGAG	1 cut(s)	1691
BpuMI	CCSGG	1 cut(s)	326
BsaHI	GRCGYC	5 cut(s)	129, 237, 384, 413, 462
BsaJI	CCNNGG	6 cut(s)	225, 471, 646, 698, 1376, 1646
BsaWI	WCCGGW	1 cut(s)	208
BsaXI	ACNNNNNCTCC	6 cut(s)	116, 146, 381, 384, 411, 414
Bsc4I	CCNNNNNNNGG	3 cut(s)	360, 801, 1647
Bse118I	RCCGGY	1 cut(s)	380
Bse1I	ACTGG	2 cut(s)	1610, 1743
Bse3DI	GCAATG	3 cut(s)	1455, 1482, 1686
BseBI	CCWGG	2 cut(s)	1289, 1378
BseDI	CCNNGG	6 cut(s)	225, 471, 646, 698, 1376, 1646
BseGI	GGATG	2 cut(s)	1341, 1593
BseLI	CCNNNNNNNGG	3 cut(s)	360, 801, 1647
BseMI	GCAATG	3 cut(s)	1455, 1482, 1686
BseMII	CTCAG	5 cut(s)	35, 117, 1172, 1359, 1485
BseNI	ACTGG	2 cut(s)	1610, 1743
BsePI	GCGCGC	1 cut(s)	348
BseRI	GAGGAG	3 cut(s)	405, 408, 467
BseX3I	CGGCCG	1 cut(s)	19
BseXI	GCAGC	3 cut(s)	547, 851, 1606
BsgI	GTGCAG	1 cut(s)	1783
Bsh1236I	CGCG	6 cut(s)	158, 160, 194, 227, 350, 473
Bsh1285I	CGRYCG	2 cut(s)	22, 119
BshFI	GGCC	7 cut(s)	21, 440, 470, 479, 548, 832, 1728
BshNI	GGYRCC	1 cut(s)	383
BsiEI	CGRYCG	2 cut(s)	22, 119
BsiHKAI	GWGCWC	2 cut(s)	299, 638
BsiSI	CCGG	6 cut(s)	22, 81, 209, 326, 381, 387
BslFI	GGGAC	2 cut(s)	1359, 1623
BslI	CCNNNNNNNGG	3 cut(s)	360, 801, 1647
BsmAI	GTCTC	1 cut(s)	588
BsmFI	GGGAC	2 cut(s)	1359, 1623
BsnI	GGCC	7 cut(s)	21, 440, 470, 479, 548, 832, 1728
Bsp1286I	GDGCHC	3 cut(s)	218, 299, 638
Bsp1407I	TGTACA	1 cut(s)	966
Bsp143I	GATC	6 cut(s)	11, 95, 106, 116, 139, 553
Bsp19I	CCATGG	1 cut(s)	1646
Bsp68I	TCGCGA	1 cut(s)	194
BspANI	GGCC	7 cut(s)	21, 440, 470, 479, 548, 832, 1728
BspCNI	CTCAG	5 cut(s)	36, 116, 1171, 1360, 1486
BspFNI	CGCG	6 cut(s)	158, 160, 194, 227, 350, 473
BspLI	GGNNCC	3 cut(s)	385, 1374, 1375
BspMAI	CTGCAG	1 cut(s)	841
BspMI	ACCTGC	1 cut(s)	1187
BspOI	GCTAGC	1 cut(s)	1059
BspPI	GGATC	3 cut(s)	90, 101, 548
BspT107I	GGYRCC	1 cut(s)	383
BsrDI	GCAATG	3 cut(s)	1455, 1482, 1686
BsrFI	RCCGGY	1 cut(s)	380
BsrGI	TGTACA	1 cut(s)	966
BsrI	ACTGG	2 cut(s)	1610, 1743
BssAI	RCCGGY	1 cut(s)	380
BssECI	CCNNGG	6 cut(s)	225, 471, 646, 698, 1376, 1646
BssHII	GCGCGC	1 cut(s)	348
BssMI	GATC	6 cut(s)	11, 95, 106, 116, 139, 553
BssNAI	GTATAC	1 cut(s)	1294
BssNI	GRCGYC	5 cut(s)	129, 237, 384, 413, 462
BssT1I	CCWWGG	3 cut(s)	646, 698, 1646
Bst1107I	GTATAC	1 cut(s)	1294
Bst2UI	CCWGG	2 cut(s)	1289, 1378
Bst4CI	ACNGT	3 cut(s)	190, 289, 373
Bst6I	CTCTTC	2 cut(s)	92, 176
BstACI	GRCGYC	5 cut(s)	129, 237, 384, 413, 462
BstAUI	TGTACA	1 cut(s)	966
BstC8I	GCNNGC	5 cut(s)	150, 350, 382, 1057, 1517
BstDEI	CTNAG	7 cut(s)	44, 103, 1153, 1158, 1368, 1461, 1494
BstDSI	CCRYGG	3 cut(s)	225, 471, 1646
BstF5I	GGATG	2 cut(s)	1341, 1593
BstFNI	CGCG	6 cut(s)	158, 160, 194, 227, 350, 473
BstH2I	RGCGCY	2 cut(s)	387, 519
BstHHI	GCGC	6 cut(s)	160, 350, 352, 386, 518, 1624
BstKTI	GATC	6 cut(s)	14, 98, 109, 119, 142, 556
BstMAI	GTCTC	1 cut(s)	588
BstMBI	GATC	6 cut(s)	11, 95, 106, 116, 139, 553
BstMCI	CGRYCG	2 cut(s)	22, 119
BstMWI	GCNNNNNNNGC	5 cut(s)	54, 476, 817, 1124, 1208
BstNI	CCWGG	2 cut(s)	1289, 1378
BstNSI	RCATGY	1 cut(s)	1742
BstPAI	GACNNNNGTC	1 cut(s)	311
BstSCI	CCNGG	3 cut(s)	324, 1287, 1376
BstSFI	CTRYAG	1 cut(s)	837
BstUI	CGCG	6 cut(s)	158, 160, 194, 227, 350, 473
BstV1I	GCAGC	3 cut(s)	547, 851, 1606
BstV2I	GAAGAC	1 cut(s)	1512
BstX2I	RGATCY	2 cut(s)	106, 553
BstYI	RGATCY	2 cut(s)	106, 553
BstZ17I	GTATAC	1 cut(s)	1294
BstZI	CGGCCG	1 cut(s)	19
BsuRI	GGCC	7 cut(s)	21, 440, 470, 479, 548, 832, 1728
BtgI	CCRYGG	3 cut(s)	225, 471, 1646
BtrI	CACGTC	1 cut(s)	253
BtsCI	GGATG	2 cut(s)	1341, 1593
BtsIMutI	CAGTG	3 cut(s)	579, 587, 1311
BtuMI	TCGCGA	1 cut(s)	194
BveI	ACCTGC	1 cut(s)	1187
Cac8I	GCNNGC	5 cut(s)	150, 350, 382, 1057, 1517
CfoI	GCGC	6 cut(s)	160, 350, 352, 386, 518, 1624
Cfr10I	RCCGGY	1 cut(s)	380
Cfr13I	GGNCC	3 cut(s)	186, 1373, 1726
Cfr42I	CCGCGG	2 cut(s)	228, 474
CseI	GACGC	4 cut(s)	137, 245, 421, 451
Csp6I	GTAC	3 cut(s)	595, 967, 1750
CviAII	CATG	9 cut(s)	544, 601, 772, 928, 1075, 1632, 1647, 1723, 1739
CviQI	GTAC	3 cut(s)	595, 967, 1750
DdeI	CTNAG	7 cut(s)	44, 103, 1153, 1158, 1368, 1461, 1494
DinI	GGCGCC	1 cut(s)	385
DpnI	GATC	6 cut(s)	13, 97, 108, 118, 141, 555
DpnII	GATC	6 cut(s)	11, 95, 106, 116, 139, 553
DraI	TTTAAA	1 cut(s)	1527
EaeI	YGGCCR	3 cut(s)	19, 477, 546
EagI	CGGCCG	1 cut(s)	19
Eam1104I	CTCTTC	2 cut(s)	92, 176
EarI	CTCTTC	2 cut(s)	92, 176
EclXI	CGGCCG	1 cut(s)	19
Eco130I	CCWWGG	3 cut(s)	646, 698, 1646
Eco24I	GRGCYC	1 cut(s)	218
Eco32I	GATATC	2 cut(s)	910, 1438
Eco47I	GGWCC	2 cut(s)	186, 1373
Eco52I	CGGCCG	1 cut(s)	19
Eco57I	CTGAAG	1 cut(s)	611
EcoO109I	RGGNCCY	1 cut(s)	1373
EcoRI	GAATTC	2 cut(s)	269, 622
EcoRII	CCWGG	2 cut(s)	1287, 1376
EcoRV	GATATC	2 cut(s)	910, 1438
EcoT14I	CCWWGG	3 cut(s)	646, 698, 1646
EcoT38I	GRGCYC	1 cut(s)	218
EgeI	GGCGCC	1 cut(s)	385
EheI	GGCGCC	1 cut(s)	385
ErhI	CCWWGG	3 cut(s)	646, 698, 1646
FaeI	CATG	9 cut(s)	547, 604, 775, 931, 1078, 1635, 1650, 1726, 1742
FaqI	GGGAC	2 cut(s)	1359, 1623
FatI	CATG	9 cut(s)	543, 600, 771, 927, 1074, 1631, 1646, 1722, 1738
FauI	CCCGC	2 cut(s)	157, 531
FblI	GTMKAC	1 cut(s)	1293
Fnu4HI	GCNGC	8 cut(s)	19, 153, 156, 225, 471, 536, 840, 1620
FokI	GGATG	2 cut(s)	1328, 1580
FriOI	GRGCYC	1 cut(s)	218
Fsp4HI	GCNGC	8 cut(s)	19, 153, 156, 225, 471, 536, 840, 1620
FspBI	CTAG	3 cut(s)	1056, 1346, 1574
FspI	TGCGCA	1 cut(s)	1623
GlaI	GCGC	6 cut(s)	159, 349, 351, 385, 517, 1623
GluI	GCNGC	8 cut(s)	19, 153, 156, 225, 471, 536, 840, 1620
GsuI	CTGGAG	3 cut(s)	1382, 1593, 1715
HaeII	RGCGCY	2 cut(s)	387, 519
HaeIII	GGCC	7 cut(s)	21, 440, 470, 479, 548, 832, 1728
HapII	CCGG	6 cut(s)	22, 81, 209, 326, 381, 387
HgaI	GACGC	4 cut(s)	137, 245, 421, 451
HhaI	GCGC	6 cut(s)	160, 350, 352, 386, 518, 1624
Hin1I	GRCGYC	5 cut(s)	129, 237, 384, 413, 462
Hin1II	CATG	9 cut(s)	547, 604, 775, 931, 1078, 1635, 1650, 1726, 1742
Hin6I	GCGC	6 cut(s)	158, 348, 350, 384, 516, 1622
HinP1I	GCGC	6 cut(s)	158, 348, 350, 384, 516, 1622
HincII	GTYRAC	2 cut(s)	765, 1176
HindII	GTYRAC	2 cut(s)	765, 1176
HindIII	AAGCTT	1 cut(s)	1110
HpaII	CCGG	6 cut(s)	22, 81, 209, 326, 381, 387
HphI	GGTGA	1 cut(s)	446
Hpy166II	GTNNAC	5 cut(s)	577, 765, 967, 1176, 1294
Hpy188I	TCNGA	8 cut(s)	45, 106, 116, 136, 558, 853, 1495, 1598
Hpy188III	TCNNGA	9 cut(s)	37, 193, 304, 334, 743, 1084, 1361, 1502, 1732
Hpy8I	GTNNAC	5 cut(s)	577, 765, 967, 1176, 1294
Hpy99I	CGWCG	8 cut(s)	131, 140, 194, 239, 254, 310, 415, 467
HpyAV	CCTTC	2 cut(s)	425, 1637
HpyCH4III	ACNGT	3 cut(s)	190, 289, 373
HpyCH4IV	ACGT	3 cut(s)	252, 1251, 1752
HpyF10VI	GCNNNNNNNGC	5 cut(s)	54, 476, 817, 1124, 1208
HpyF3I	CTNAG	7 cut(s)	44, 103, 1153, 1158, 1368, 1461, 1494
HpySE526I	ACGT	3 cut(s)	252, 1251, 1752
Hsp92I	GRCGYC	5 cut(s)	129, 237, 384, 413, 462
Hsp92II	CATG	9 cut(s)	547, 604, 775, 931, 1078, 1635, 1650, 1726, 1742
HspAI	GCGC	6 cut(s)	158, 348, 350, 384, 516, 1622
KasI	GGCGCC	1 cut(s)	383
KflI	GGGWCCC	1 cut(s)	1373
KroI	GCCGGC	1 cut(s)	380
KroNI	GCCGGC	1 cut(s)	382
KspI	CCGCGG	2 cut(s)	228, 474
Kzo9I	GATC	6 cut(s)	11, 95, 106, 116, 139, 553
LmnI	GCTCC	5 cut(s)	62, 206, 302, 633, 898
Lsp1109I	GCAGC	3 cut(s)	547, 851, 1606
MaeI	CTAG	3 cut(s)	1056, 1346, 1574
MaeII	ACGT	3 cut(s)	252, 1251, 1752
MaeIII	GTNAC	3 cut(s)	301, 499, 1120
MalI	GATC	6 cut(s)	13, 97, 108, 118, 141, 555
MboI	GATC	6 cut(s)	11, 95, 106, 116, 139, 553
MflI	RGATCY	2 cut(s)	106, 553
MhlI	GDGCHC	3 cut(s)	218, 299, 638
MlsI	TGGCCA	1 cut(s)	479
MluNI	TGGCCA	1 cut(s)	479
Mly113I	GGCGCC	1 cut(s)	384
MlyI	GAGTC	2 cut(s)	78, 530
MmeI	TCCRAC	3 cut(s)	123, 159, 1088
Mox20I	TGGCCA	1 cut(s)	479
MroNI	GCCGGC	1 cut(s)	380
MroXI	GAANNNNTTC	3 cut(s)	596, 1278, 1389
MscI	TGGCCA	1 cut(s)	479
MslI	CAYNNNNRTG	2 cut(s)	1197, 1598
Msp20I	TGGCCA	1 cut(s)	479
MspA1I	CMGCKG	3 cut(s)	227, 473, 538
MspI	CCGG	6 cut(s)	22, 81, 209, 326, 381, 387
MspR9I	CCNGG	3 cut(s)	326, 1289, 1378
MvaI	CCWGG	2 cut(s)	1289, 1378
MvnI	CGCG	6 cut(s)	158, 160, 194, 227, 350, 473
MwoI	GCNNNNNNNGC	5 cut(s)	54, 476, 817, 1124, 1208
NaeI	GCCGGC	1 cut(s)	382
NarI	GGCGCC	1 cut(s)	384
NciI	CCSGG	1 cut(s)	326
NcoI	CCATGG	1 cut(s)	1646
NdeII	GATC	6 cut(s)	11, 95, 106, 116, 139, 553
NgoMIV	GCCGGC	1 cut(s)	380
NheI	GCTAGC	1 cut(s)	1055
NlaIII	CATG	9 cut(s)	547, 604, 775, 931, 1078, 1635, 1650, 1726, 1742
NlaIV	GGNNCC	3 cut(s)	385, 1374, 1375
NmeAIII	GCCGAG	2 cut(s)	544, 1261
NmuCI	GTSAC	2 cut(s)	301, 1120
NruI	TCGCGA	1 cut(s)	194
NsbI	TGCGCA	1 cut(s)	1623
NspI	RCATGY	1 cut(s)	1742
PalAI	GGCGCGCC	1 cut(s)	348
PauI	GCGCGC	1 cut(s)	348
PcsI	WCGNNNNNNNCGW	2 cut(s)	132, 135
PdiI	GCCGGC	1 cut(s)	382
PdmI	GAANNNNTTC	3 cut(s)	596, 1278, 1389
PfeI	GAWTC	8 cut(s)	40, 337, 746, 931, 1080, 1301, 1314, 1663
PflFI	GACNNNGTC	1 cut(s)	415
PkrI	GCNGC	8 cut(s)	20, 154, 157, 226, 472, 537, 841, 1621
Ple19I	CGATCG	1 cut(s)	119
PleI	GAGTC	2 cut(s)	78, 529
PluTI	GGCGCC	1 cut(s)	387
PpsI	GAGTC	2 cut(s)	78, 529
PpuMI	RGGWCCY	1 cut(s)	1373
PshAI	GACNNNNGTC	1 cut(s)	311
Psp5II	RGGWCCY	1 cut(s)	1373
Psp6I	CCWGG	2 cut(s)	1287, 1376
PspGI	CCWGG	2 cut(s)	1287, 1376
PspN4I	GGNNCC	3 cut(s)	385, 1374, 1375
PspPI	GGNCC	3 cut(s)	186, 1373, 1726
PspPPI	RGGWCCY	1 cut(s)	1373
PstI	CTGCAG	1 cut(s)	841
PsuI	RGATCY	2 cut(s)	106, 553
PsyI	GACNNNGTC	1 cut(s)	415
PteI	GCGCGC	1 cut(s)	348
PvuI	CGATCG	1 cut(s)	119
RruI	TCGCGA	1 cut(s)	194
RsaI	GTAC	3 cut(s)	596, 968, 1751
RsaNI	GTAC	3 cut(s)	595, 967, 1750
RseI	CAYNNNNRTG	2 cut(s)	1197, 1598
SacII	CCGCGG	2 cut(s)	228, 474
SatI	GCNGC	8 cut(s)	19, 153, 156, 225, 471, 536, 840, 1620
Sau3AI	GATC	6 cut(s)	11, 95, 106, 116, 139, 553
Sau96I	GGNCC	3 cut(s)	186, 1373, 1726
ScaI	AGTACT	1 cut(s)	596
SchI	GAGTC	2 cut(s)	78, 530
ScrFI	CCNGG	3 cut(s)	326, 1289, 1378
SduI	GDGCHC	3 cut(s)	218, 299, 638
SfcI	CTRYAG	1 cut(s)	837
SfiI	GGCCNNNNNGGCC	1 cut(s)	476
SfoI	GGCGCC	1 cut(s)	385
Sfr303I	CCGCGG	2 cut(s)	228, 474
SgrBI	CCGCGG	2 cut(s)	228, 474
SgsI	GGCGCGCC	1 cut(s)	348
SinI	GGWCC	2 cut(s)	186, 1373
SmiMI	CAYNNNNRTG	2 cut(s)	1197, 1598
SmlI	CTYRAG	1 cut(s)	1706
SmoI	CTYRAG	1 cut(s)	1706
SspDI	GGCGCC	1 cut(s)	383
SspMI	CTAG	3 cut(s)	1056, 1346, 1574
StyD4I	CCNGG	3 cut(s)	324, 1287, 1376
StyI	CCWWGG	3 cut(s)	646, 698, 1646
TaaI	ACNGT	3 cut(s)	190, 289, 373
TaiI	ACGT	3 cut(s)	255, 1254, 1755
TaqI	TCGA	3 cut(s)	36, 119, 465
TatI	WGTACW	2 cut(s)	594, 966
TauI	GCSGC	5 cut(s)	21, 155, 158, 227, 473
TfiI	GAWTC	8 cut(s)	40, 337, 746, 931, 1080, 1301, 1314, 1663
TscAI	CASTG	3 cut(s)	579, 594, 1311
TseFI	GTSAC	2 cut(s)	301, 1120
TseI	GCWGC	3 cut(s)	535, 839, 1619
Tsp45I	GTSAC	2 cut(s)	301, 1120
TspDTI	ATGAA	7 cut(s)	589, 615, 1127, 1271, 1330, 1444, 1697
TspGWI	ACGGA	5 cut(s)	276, 289, 323, 409, 1062
TspRI	CASTG	3 cut(s)	579, 594, 1311
Tth111I	GACNNNGTC	1 cut(s)	415
VpaK11BI	GGWCC	2 cut(s)	186, 1373
XapI	RAATTY	2 cut(s)	269, 622
XceI	RCATGY	1 cut(s)	1742
XcmI	CCANNNNNNNNNTGG	1 cut(s)	341
XmiI	GTMKAC	1 cut(s)	1293
XmnI	GAANNNNTTC	3 cut(s)	596, 1278, 1389
XspI	CTAG	3 cut(s)	1056, 1346, 1574
ZrmI	AGTACT	1 cut(s)	596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.