Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007288

Physical Location & Seq

Genomic Coordinates Reverse (-)

90461428 .. 90467949

Gene Structure 6522 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00069530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2331 bp

ATGGAAACCGACGAAGAACAACGCGTCACTCCATTCCAGCTCCAGTTCGACAAGCCAGTCGCTTCGCAGATTAAGATCGCGGAGTGGAATCCCGAGAAGGATTTACTCGCCATGGTAACTGAAGACTCCAAGATTTTACTGCACCGCTTCAATTGGCAGAGGCTCTGGACAATCTCCCCAGGGAAGAGCATAACGTCTTTGTGTTGGAGACCTGATGGTAAAGCCATCGCCGTCGGGCTCGAAGATGGAACAGTCTCATTGCATGATGTTGAAAATGGAAAGTTGTTGAGGAGCTTGAAATCGCATACTGTGGCTGTTGTTTCTCTTAATTGGGAGGAGGATGGACAGATGACTAGAGATGAGTATGGCAGCCACTCGGTATATGAAGACCGTACTTCTCGTTTCTTTCCACCACCTCCAAGAGTTCCACGAATGCCTGGACTGGTATCTGGAGAGACCGGTTTCATGGATGATAGTGAAGATTCATTTCAGGAGCTGTCAAATTCTTCACAGCAACGTTTTAATATCCTCTGCAGTGGAGATAAAGATGGATTCATTTGCTTTAGTATATTTGGGATCTTTCCGATAGGGAAAATTAACATACACAACTTTGGTGCTGCTAGTCCACTTAAGGATACTGAAGCTGAGTGTAGACTTCTGAATGCTTCTGTTTACAAGGTTGCTTTGTCAAAAGATCTTTGTCATTTGATAGTCATGTGTTCAGGAGAATTAATTGAAGATAGGGAAGAATCAGAAAACAGGCAGATGACTGAACCTGGTATGCATGGCTTACATTGCATAGTGCTTGATACATCTATATTTTGGAAGAGAAAAAGTGAGCTTCATCAAGTGGCGCAACAAGCTTCTAACATTGAGGAATTGGCAGAGGTTATTCGGTCATCAATTTCAGTTATGCACAAGGAGTGGTCTGATGCTATGCGCATTTTTCATGACAAGTTTGATTCTCTGTCTAATCTGATCATAGACCATGGACTCCAGTCCTCTCCCCAAGAGGAATTTTTGAGTCTTTTAGGTGGTGCAAGGACTAGTCCAGCAGTTCATCAGTTTCTAGTTAACTCTCTCGGTGAAGTGGGCGTGAAGCGCGTGTCAAAGGCTGTTTGTGGTGCTGGGAAAGAACTGCAGCTTATAATCCTAAATCATCTCCAGCCTGCTGCAGAAATTATCGCATTTAGGATGGGAGAACTAAGAGGCTTTTCACGATGGAGAGCACGCTATCAGGGCATTGGTTTGGATGAGACGCTTATCAATAATGCAACAGAAAAAGCTGGAATGATACTTGTACAAGTTGAACGGTTTATCAGGGTGCTTTCATCTGTGGTGCAGCAGTTTTCGAACTTCTTCAATTGGCTCTTGAAGTGTATAAAGTTACTCAATTCCGAACCCAGTGATCATCATCTTCTACTGTACAATAGTGAACTTGTTGTTATATTCTTGAAGTTTCTATATGACCAAGATCCTGTTAAGCAGTTGCTGGAGGCATCAGAAGCTGATGAGAGTATCGAAGTTGGATTGGAAACAGTGCAGAGAGTTAGAGAATTAGTTCAGTTTGGGGGATTTTCAGATTGTGAGCACCTGCAGAGGACGTTAGCCAAGGAATTTCAGCAGATGGAGTCTAGTTTTAAGGAGGCTTTTCAGATGCCTTTTACTACAATTTCAAGAAAGATAGTCTGTGAAGATTCATTGCCACTTTGCCCACTTCCACCTTTGTCAGCATCTTTGTCTACCAGTATTCCTATGTCAGTATCATATTATGAGGATGCCTCCCATTCCGTCCCTCATCAGACTCGTCAACGTATGTTTCTTGACTACATATCCTTCCCTATACCAGATGAGTCCTTCTCGGGTATGGAAAATTGTATAGGCATAGTGAGGGGGATTATGCATGACTCAAGCATTGTAAAGAGGGGTTATACTTCAGTAGAAGCTGTACTGTTGTGCATCCCTGTTGGTTATTACTGTGTGGATCTTTCTTTATATAAGGAAAGTCAGATTGTTTTATTATTAAATGAAACAACTACCACTTCTGAAAGCTCTGGTGATGCCTGTATGATGATTGTGCAAGCAAATGACCTTCCATTTGTATCTATCACAAGATCCACTAATCTAAACTATTGGAACTTGCATCAACTGAAGGACTCTGTTGTTCACTTGCAAATGGAGAACGAGAAGGTTCGCAGTATATCCCATTCTGTTATTGCTCCTCTAGCAGTTAGCTCATCAAGAGGTGTGGCTTGTGTTTTTGCTGCAAGAAAGCGTGCCTTGGTCTACATTCTGGAGGAAGATGAAGATGAAGTTTCTGATTCAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC4 ANAPC4_WD40

Protein Analysis

776

Amino Acids

87.39

Weight (kDa)

5.18

Isoelectric Point (pI)

48.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR36-Utp21_1st	PF25171	18 - 111	7.1e-06	WDR36/Utp21 first beta-propeller
Beta-prop_EML_2	PF23414	19 - 119	1.2e-08	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR19_1st	PF23389	21 - 117	2e-07	WDR19 first beta-propeller
WD40_Prp19	PF24814	22 - 115	3e-08	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	22 - 114	1.1e-08	WDHD1 first WD40 domain
Beta-prop_WDR35_TULP_N	PF24797	22 - 113	4.1e-07	WDR35/TULP4 N-terminal
Beta-prop_THOC3	PF25174	23 - 117	9.8e-11	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	24 - 117	6.9e-09	WDR5 beta-propeller domain
WD40_CDC20-Fz	PF24807	26 - 131	5.6e-11	CDC20/Fizzy WD40 domain
WDR55	PF24796	26 - 133	3.3e-06	WDR55
ANAPC4_WD40	PF12894	28 - 113	3.8e-29	Anaphase-promoting complex subunit 4 WD40 domain
Beta-prop_WDR3_2nd	PF25172	33 - 117	8.6e-06	WDR3 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	62 - 117	3.2e-08	WDR3 first beta-propeller domain
ANAPC4	PF12896	265 - 467	6.1e-57	Anaphase-promoting complex, cyclosome, subunit 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0007288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21530
fragaria_vesca	FvH4_3g04050 FvH4_3g04050 FvH4_3g04050
malus_domestica	MD10G1303000.v1.1
prunus_persica	Prupe.4G036500_v2.0.a1 Prupe.4G036500_v2.0.a1 Prupe.4G036500_v2.0.a1 Prupe.4G036500_v2.0.a1 Prupe.4G036500_v2.0.a1 Prupe.4G036500_v2.0.a1
pyrus_communis	pycom10g25560
rosa_chinensis	RchiOBHm_Chr5g0006531
rosa_laevigata	RLG00000031396 RLG00000034652
rosa_multiflora	Rmu_sc0008991.1_g000016
rosa_roxburghii	Rroxscaffold_1G00031790 Rroxscaffold_1G00069530
rosa_rugosa	Rorug04G0421700
rosa_samantha	Rh5AG049400 Rh5BG048700 Rh5CG057000 Rh5DG048000
rosa_wichuraiana	Rw5G004950 Rw5G030980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1148
AarI	CACCTGC	1 cut(s)	1602
AasI	GACNNNNNNGTC	1 cut(s)	56
Acc16I	TGCGCA	1 cut(s)	941
Acc36I	ACCTGC	1 cut(s)	1602
AccI	GTMKAC	3 cut(s)	652, 1742, 2286
AccII	CGCG	3 cut(s)	24, 80, 1104
AciI	CCGC	2 cut(s)	80, 145
AclI	AACGTT	1 cut(s)	517
AclWI	GGATC	4 cut(s)	584, 1469, 1992, 2109
AcsI	RAATTY	3 cut(s)	502, 1016, 1616
AcuI	CTGAAG	4 cut(s)	141, 660, 1920, 2171
AfaI	GTAC	4 cut(s)	394, 1302, 1427, 1950
AflII	CTTAAG	1 cut(s)	629
AflIII	ACRYGT	1 cut(s)	22
AgeI	ACCGGT	1 cut(s)	458
AgsI	TTSAA	9 cut(s)	151, 272, 298, 737, 1310, 1363, 1375, 1456, 1677
AhlI	ACTAGT	1 cut(s)	1046
AjnI	CCWGG	3 cut(s)	178, 436, 775
Alw21I	GWGCWC	2 cut(s)	1231, 1593
Alw26I	GTCTC	4 cut(s)	202, 259, 449, 1250
AlwI	GGATC	4 cut(s)	584, 1469, 1992, 2109
AlwNI	CAGNNNCTG	3 cut(s)	496, 1492, 1508
Ama87I	CYCGRG	2 cut(s)	92, 1861
ApeKI	GCWGC	6 cut(s)	369, 617, 1141, 1172, 1342, 2264
ApoI	RAATTY	3 cut(s)	502, 1016, 1616
ArsI	GACNNNNNNTTYG	2 cut(s)	2081, 2113
AseI	ATTAAT	1 cut(s)	731
AsiGI	ACCGGT	1 cut(s)	458
Asp700I	GAANNNNTTC	2 cut(s)	1358, 1560
AspLEI	GCGC	3 cut(s)	856, 942, 1104
AsuHPI	GGTGA	2 cut(s)	1097, 2069
AsuII	TTCGAA	1 cut(s)	1352
AvaI	CYCGRG	2 cut(s)	92, 1861
BanII	GRGCYC	1 cut(s)	240
BbsI	GAAGAC	2 cut(s)	129, 393
Bbv12I	GWGCWC	2 cut(s)	1231, 1593
BbvI	GCAGC	6 cut(s)	381, 604, 1153, 1159, 1354, 2251
BccI	CCATC	8 cut(s)	209, 233, 239, 335, 542, 1189, 1215, 1621
BceAI	ACGGC	1 cut(s)	215
BciT130I	CCWGG	3 cut(s)	180, 438, 777
BciVI	GTATCC	1 cut(s)	628
BclI	TGATCA	2 cut(s)	978, 1408
BcoDI	GTCTC	4 cut(s)	202, 259, 449, 1250
BcuI	ACTAGT	1 cut(s)	1046
BfaI	CTAG	6 cut(s)	354, 621, 1047, 1070, 1635, 2225
BfmI	CTRYAG	4 cut(s)	532, 1139, 1173, 1595
BfrI	CTTAAG	1 cut(s)	629
BfuAI	ACCTGC	1 cut(s)	1602
BfuI	GTATCC	1 cut(s)	628
BglII	AGATCT	1 cut(s)	694
BisI	GCNGC	6 cut(s)	370, 618, 1142, 1173, 1343, 2265
BlsI	GCNGC	6 cut(s)	371, 619, 1143, 1174, 1344, 2266
Bme1390I	CCNGG	3 cut(s)	180, 438, 777
BmeT110I	CYCGRG	2 cut(s)	92, 1861
BmrFI	CCNGG	3 cut(s)	180, 438, 777
BmrI	ACTGGG	1 cut(s)	1398
BmsI	GCATC	8 cut(s)	922, 1508, 1647, 1742, 1768, 1968, 2050, 2152
BmuI	ACTGGG	1 cut(s)	1398
BoxI	GACNNNNGTC	1 cut(s)	997
BpiI	GAAGAC	2 cut(s)	129, 393
BplI	GAGNNNNNCTC	4 cut(s)	1766, 1798, 1844, 1876
BpmI	CTGGAG	6 cut(s)	26, 471, 980, 1148, 1514, 2315
Bpu14I	TTCGAA	1 cut(s)	1352
BpuEI	CTTGAG	1 cut(s)	1894
BsaBI	GATNNNNATC	2 cut(s)	74, 1413
BsaI	GGTCTC	2 cut(s)	202, 449
BsaJI	CCNNGG	6 cut(s)	111, 178, 179, 988, 1611, 2280
BsaWI	WCCGGW	1 cut(s)	458
Bse118I	RCCGGY	1 cut(s)	458
Bse1I	ACTGG	6 cut(s)	43, 56, 447, 997, 1404, 1746
Bse3DI	GCAATG	3 cut(s)	257, 793, 1700
Bse8I	GATNNNNATC	2 cut(s)	74, 1413
BseBI	CCWGG	3 cut(s)	180, 438, 777
BseDI	CCNNGG	6 cut(s)	111, 178, 179, 988, 1611, 2280
BseGI	GGATG	6 cut(s)	346, 475, 1200, 1258, 1783, 1959
BseJI	GATNNNNATC	2 cut(s)	74, 1413
BseMI	GCAATG	3 cut(s)	257, 793, 1700
BseMII	CTCAG	1 cut(s)	636
BseNI	ACTGG	6 cut(s)	43, 56, 447, 997, 1404, 1746
BseRI	GAGGAG	3 cut(s)	304, 350, 2211
BseXI	GCAGC	6 cut(s)	381, 604, 1153, 1159, 1354, 2251
BseYI	CCCAGC	1 cut(s)	1127
BsgI	GTGCAG	3 cut(s)	125, 1361, 1562
Bsh1236I	CGCG	3 cut(s)	24, 80, 1104
BshTI	ACCGGT	1 cut(s)	458
BsiHKAI	GWGCWC	2 cut(s)	1231, 1593
BsiHKCI	CYCGRG	2 cut(s)	92, 1861
BsiSI	CCGG	1 cut(s)	459
BslFI	GGGAC	1 cut(s)	1778
BsmAI	GTCTC	4 cut(s)	202, 259, 449, 1250
BsmBI	CGTCTC	1 cut(s)	1250
BsmFI	GGGAC	1 cut(s)	1778
BsmI	GAATGC	2 cut(s)	438, 667
Bso31I	GGTCTC	2 cut(s)	202, 449
BsoBI	CYCGRG	2 cut(s)	92, 1861
Bsp119I	TTCGAA	1 cut(s)	1352
Bsp1286I	GDGCHC	3 cut(s)	240, 1231, 1593
Bsp1407I	TGTACA	2 cut(s)	1300, 1425
Bsp143I	GATC	8 cut(s)	75, 576, 694, 978, 1408, 1474, 1984, 2114
Bsp19I	CCATGG	2 cut(s)	111, 988
BspACI	CCGC	2 cut(s)	80, 145
BspCNI	CTCAG	1 cut(s)	637
BspFNI	CGCG	3 cut(s)	24, 80, 1104
BspHI	TCATGA	1 cut(s)	949
BspMAI	CTGCAG	4 cut(s)	536, 1143, 1177, 1599
BspMI	ACCTGC	1 cut(s)	1602
BspPI	GGATC	4 cut(s)	584, 1469, 1992, 2109
BspQI	GCTCTTC	1 cut(s)	179
BspT104I	TTCGAA	1 cut(s)	1352
BspTI	CTTAAG	1 cut(s)	629
BspTNI	GGTCTC	2 cut(s)	202, 449
BsrDI	GCAATG	3 cut(s)	257, 793, 1700
BsrFI	RCCGGY	1 cut(s)	458
BsrGI	TGTACA	2 cut(s)	1300, 1425
BsrI	ACTGG	6 cut(s)	43, 56, 447, 997, 1404, 1746
BssAI	RCCGGY	1 cut(s)	458
BssECI	CCNNGG	6 cut(s)	111, 178, 179, 988, 1611, 2280
BssMI	GATC	8 cut(s)	75, 576, 694, 978, 1408, 1474, 1984, 2114
BssT1I	CCWWGG	4 cut(s)	111, 988, 1611, 2280
Bst2UI	CCWGG	3 cut(s)	180, 438, 777
Bst4CI	ACNGT	8 cut(s)	253, 310, 392, 1314, 1425, 1540, 1953, 1979
Bst6I	CTCTTC	2 cut(s)	179, 821
BstAFI	CTTAAG	1 cut(s)	629
BstAUI	TGTACA	2 cut(s)	1300, 1425
BstBI	TTCGAA	1 cut(s)	1352
BstC8I	GCNNGC	4 cut(s)	1170, 1231, 2082, 2277
BstDEI	CTNAG	2 cut(s)	645, 1205
BstDSI	CCRYGG	2 cut(s)	111, 988
BstF5I	GGATG	6 cut(s)	346, 475, 1200, 1258, 1783, 1959
BstFNI	CGCG	3 cut(s)	24, 80, 1104
BstHHI	GCGC	3 cut(s)	856, 942, 1104
BstKTI	GATC	8 cut(s)	78, 579, 697, 981, 1411, 1477, 1987, 2117
BstMAI	GTCTC	4 cut(s)	202, 259, 449, 1250
BstMBI	GATC	8 cut(s)	75, 576, 694, 978, 1408, 1474, 1984, 2114
BstMWI	GCNNNNNNNGC	6 cut(s)	795, 860, 1101, 1239, 1505, 2225
BstNI	CCWGG	3 cut(s)	180, 438, 777
BstPAI	GACNNNNGTC	1 cut(s)	997
BstSCI	CCNGG	3 cut(s)	178, 436, 775
BstSFI	CTRYAG	4 cut(s)	532, 1139, 1173, 1595
BstUI	CGCG	3 cut(s)	24, 80, 1104
BstV1I	GCAGC	6 cut(s)	381, 604, 1153, 1159, 1354, 2251
BstV2I	GAAGAC	2 cut(s)	129, 393
BstX2I	RGATCY	5 cut(s)	576, 694, 1474, 1984, 2114
BstYI	RGATCY	5 cut(s)	576, 694, 1474, 1984, 2114
BsuI	GTATCC	1 cut(s)	628
BtgI	CCRYGG	2 cut(s)	111, 988
BtgZI	GCGATG	1 cut(s)	211
BtsCI	GGATG	6 cut(s)	346, 475, 1200, 1258, 1783, 1959
BtsI	GCAGTG	1 cut(s)	541
BtsIMutI	CAGTG	3 cut(s)	541, 1411, 1545
BveI	ACCTGC	1 cut(s)	1602
Cac8I	GCNNGC	4 cut(s)	1170, 1231, 2082, 2277
CaiI	CAGNNNCTG	3 cut(s)	496, 1492, 1508
CciI	TCATGA	1 cut(s)	949
CfoI	GCGC	3 cut(s)	856, 942, 1104
Cfr10I	RCCGGY	1 cut(s)	458
CseI	GACGC	2 cut(s)	13, 1267
CsiI	ACCWGGT	1 cut(s)	775
Csp6I	GTAC	4 cut(s)	393, 1301, 1426, 1949
CspAI	ACCGGT	1 cut(s)	458
CspCI	CAANNNNNGTGG	2 cut(s)	2229, 2264
CviAII	CATG	8 cut(s)	112, 263, 466, 715, 785, 950, 989, 1904
CviQI	GTAC	4 cut(s)	393, 1301, 1426, 1949
DdeI	CTNAG	2 cut(s)	645, 1205
DpnI	GATC	8 cut(s)	77, 578, 696, 980, 1410, 1476, 1986, 2116
DpnII	GATC	8 cut(s)	75, 576, 694, 978, 1408, 1474, 1984, 2114
DrdI	GACNNNNNNGTC	1 cut(s)	56
DseDI	GACNNNNNNGTC	1 cut(s)	56
Eam1104I	CTCTTC	2 cut(s)	179, 821
EarI	CTCTTC	2 cut(s)	179, 821
Eco130I	CCWWGG	4 cut(s)	111, 988, 1611, 2280
Eco24I	GRGCYC	1 cut(s)	240
Eco31I	GGTCTC	2 cut(s)	202, 449
Eco57I	CTGAAG	4 cut(s)	141, 660, 1920, 2171
Eco88I	CYCGRG	2 cut(s)	92, 1861
EcoRII	CCWGG	3 cut(s)	178, 436, 775
EcoT14I	CCWWGG	4 cut(s)	111, 988, 1611, 2280
EcoT22I	ATGCAT	2 cut(s)	786, 1905
EcoT38I	GRGCYC	1 cut(s)	240
ErhI	CCWWGG	4 cut(s)	111, 988, 1611, 2280
Esp3I	CGTCTC	1 cut(s)	1250
FaeI	CATG	8 cut(s)	115, 266, 469, 718, 788, 953, 992, 1907
FalI	AAGNNNNNCTT	2 cut(s)	2264, 2296
FaqI	GGGAC	1 cut(s)	1778
FatI	CATG	8 cut(s)	111, 262, 465, 714, 784, 949, 988, 1903
FbaI	TGATCA	2 cut(s)	978, 1408
FblI	GTMKAC	3 cut(s)	652, 1742, 2286
Fnu4HI	GCNGC	6 cut(s)	370, 618, 1142, 1173, 1343, 2265
FokI	GGATG	6 cut(s)	353, 482, 1207, 1265, 1790, 1946
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	6 cut(s)	370, 618, 1142, 1173, 1343, 2265
FspAI	RTGCGCAY	1 cut(s)	941
FspBI	CTAG	6 cut(s)	354, 621, 1047, 1070, 1635, 2225
FspI	TGCGCA	1 cut(s)	941
GlaI	GCGC	3 cut(s)	855, 941, 1103
GluI	GCNGC	6 cut(s)	370, 618, 1142, 1173, 1343, 2265
GsaI	CCCAGC	1 cut(s)	1131
GsuI	CTGGAG	6 cut(s)	26, 471, 980, 1148, 1514, 2315
HapII	CCGG	1 cut(s)	459
HgaI	GACGC	2 cut(s)	13, 1267
HhaI	GCGC	3 cut(s)	856, 942, 1104
Hin1II	CATG	8 cut(s)	115, 266, 469, 718, 788, 953, 992, 1907
Hin6I	GCGC	3 cut(s)	854, 940, 1102
HinP1I	GCGC	3 cut(s)	854, 940, 1102
HincII	GTYRAC	2 cut(s)	1075, 1811
HindII	GTYRAC	2 cut(s)	1075, 1811
HindIII	AAGCTT	1 cut(s)	861
HpaI	GTTAAC	1 cut(s)	1075
HpaII	CCGG	1 cut(s)	459
HphI	GGTGA	2 cut(s)	1097, 2069
Hpy166II	GTNNAC	9 cut(s)	626, 653, 673, 1075, 1436, 1743, 1811, 2167, 2287
Hpy8I	GTNNAC	9 cut(s)	626, 653, 673, 1075, 1436, 1743, 1811, 2167, 2287
Hpy99I	CGWCG	2 cut(s)	14, 236
HpyAV	CCTTC	6 cut(s)	91, 1846, 1867, 2102, 2146, 2182
HpyCH4III	ACNGT	8 cut(s)	253, 310, 392, 1314, 1425, 1540, 1953, 1979
HpyCH4IV	ACGT	4 cut(s)	194, 517, 1604, 1813
HpyF10VI	GCNNNNNNNGC	6 cut(s)	795, 860, 1101, 1239, 1505, 2225
HpyF3I	CTNAG	2 cut(s)	645, 1205
HpySE526I	ACGT	4 cut(s)	194, 517, 1604, 1813
Hsp92II	CATG	8 cut(s)	115, 266, 469, 718, 788, 953, 992, 1907
HspAI	GCGC	3 cut(s)	854, 940, 1102
Ksp22I	TGATCA	2 cut(s)	978, 1408
KspAI	GTTAAC	1 cut(s)	1075
Kzo9I	GATC	8 cut(s)	75, 576, 694, 978, 1408, 1474, 1984, 2114
LguI	GCTCTTC	1 cut(s)	179
LmnI	GCTCC	4 cut(s)	45, 291, 493, 2224
Lsp1109I	GCAGC	6 cut(s)	381, 604, 1153, 1159, 1354, 2251
LweI	GCATC	8 cut(s)	922, 1508, 1647, 1742, 1768, 1968, 2050, 2152
MabI	ACCWGGT	1 cut(s)	775
MaeI	CTAG	6 cut(s)	354, 621, 1047, 1070, 1635, 2225
MaeII	ACGT	4 cut(s)	194, 517, 1604, 1813
MaeIII	GTNAC	3 cut(s)	25, 115, 1386
MalI	GATC	8 cut(s)	77, 578, 696, 980, 1410, 1476, 1986, 2116
MboI	GATC	8 cut(s)	75, 576, 694, 978, 1408, 1474, 1984, 2114
MfeI	CAATTG	2 cut(s)	151, 1363
MflI	RGATCY	5 cut(s)	576, 694, 1474, 1984, 2114
MhlI	GDGCHC	3 cut(s)	240, 1231, 1593
MluI	ACGCGT	1 cut(s)	22
MlyI	GAGTC	8 cut(s)	119, 987, 1033, 1640, 1798, 1862, 1901, 2150
MmeI	TCCRAC	2 cut(s)	185, 1507
Mph1103I	ATGCAT	2 cut(s)	786, 1905
MroXI	GAANNNNTTC	2 cut(s)	1358, 1560
MspCI	CTTAAG	1 cut(s)	629
MspI	CCGG	1 cut(s)	459
MspR9I	CCNGG	3 cut(s)	180, 438, 777
MunI	CAATTG	2 cut(s)	151, 1363
Mva1269I	GAATGC	2 cut(s)	438, 667
MvaI	CCWGG	3 cut(s)	180, 438, 777
MvnI	CGCG	3 cut(s)	24, 80, 1104
MwoI	GCNNNNNNNGC	6 cut(s)	795, 860, 1101, 1239, 1505, 2225
NcoI	CCATGG	2 cut(s)	111, 988
NdeII	GATC	8 cut(s)	75, 576, 694, 978, 1408, 1474, 1984, 2114
NlaIII	CATG	8 cut(s)	115, 266, 469, 718, 788, 953, 992, 1907
NmuCI	GTSAC	1 cut(s)	25
NsbI	TGCGCA	1 cut(s)	941
NsiI	ATGCAT	2 cut(s)	786, 1905
NspV	TTCGAA	1 cut(s)	1352
PagI	TCATGA	1 cut(s)	949
PaqCI	CACCTGC	1 cut(s)	1602
PasI	CCCWGGG	1 cut(s)	179
PciSI	GCTCTTC	1 cut(s)	179
PctI	GAATGC	2 cut(s)	438, 667
PdmI	GAANNNNTTC	2 cut(s)	1358, 1560
PfeI	GAWTC	7 cut(s)	88, 482, 552, 749, 962, 1697, 2321
PinAI	ACCGGT	1 cut(s)	458
PkrI	GCNGC	6 cut(s)	371, 619, 1143, 1174, 1344, 2266
PleI	GAGTC	8 cut(s)	119, 987, 1032, 1639, 1798, 1861, 1901, 2150
PpsI	GAGTC	8 cut(s)	119, 987, 1032, 1639, 1798, 1861, 1901, 2150
PshAI	GACNNNNGTC	1 cut(s)	997
PshBI	ATTAAT	1 cut(s)	731
PsiI	TTATAA	1 cut(s)	1148
Psp1406I	AACGTT	1 cut(s)	517
Psp6I	CCWGG	3 cut(s)	178, 436, 775
PspFI	CCCAGC	1 cut(s)	1127
PspGI	CCWGG	3 cut(s)	178, 436, 775
PstI	CTGCAG	4 cut(s)	536, 1143, 1177, 1599
PstNI	CAGNNNCTG	3 cut(s)	496, 1492, 1508
PsuI	RGATCY	5 cut(s)	576, 694, 1474, 1984, 2114
RsaI	GTAC	4 cut(s)	394, 1302, 1427, 1950
RsaNI	GTAC	4 cut(s)	393, 1301, 1426, 1949
SapI	GCTCTTC	1 cut(s)	179
SatI	GCNGC	6 cut(s)	370, 618, 1142, 1173, 1343, 2265
Sau3AI	GATC	8 cut(s)	75, 576, 694, 978, 1408, 1474, 1984, 2114
SchI	GAGTC	8 cut(s)	119, 987, 1033, 1640, 1798, 1862, 1901, 2150
ScrFI	CCNGG	3 cut(s)	180, 438, 777
SduI	GDGCHC	3 cut(s)	240, 1231, 1593
SexAI	ACCWGGT	1 cut(s)	775
SfaNI	GCATC	8 cut(s)	922, 1508, 1647, 1742, 1768, 1968, 2050, 2152
SfcI	CTRYAG	4 cut(s)	532, 1139, 1173, 1595
SfuI	TTCGAA	1 cut(s)	1352
SmlI	CTYRAG	2 cut(s)	629, 1909
SmoI	CTYRAG	2 cut(s)	629, 1909
SpeI	ACTAGT	1 cut(s)	1046
SsiI	CCGC	2 cut(s)	80, 145
SspMI	CTAG	6 cut(s)	354, 621, 1047, 1070, 1635, 2225
StyD4I	CCNGG	3 cut(s)	178, 436, 775
StyI	CCWWGG	4 cut(s)	111, 988, 1611, 2280
TaaI	ACNGT	8 cut(s)	253, 310, 392, 1314, 1425, 1540, 1953, 1979
TaiI	ACGT	4 cut(s)	197, 520, 1607, 1816
TaqI	TCGA	4 cut(s)	48, 240, 1352, 1521
TaqII	GACCGA	1 cut(s)	885
TatI	WGTACW	3 cut(s)	1300, 1425, 1948
TfiI	GAWTC	7 cut(s)	88, 482, 552, 749, 962, 1697, 2321
TscAI	CASTG	3 cut(s)	541, 1411, 1545
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	6 cut(s)	369, 617, 1141, 1172, 1342, 2264
Tsp45I	GTSAC	1 cut(s)	25
TspGWI	ACGGA	1 cut(s)	1780
TspRI	CASTG	3 cut(s)	541, 1411, 1545
Vha464I	CTTAAG	1 cut(s)	629
VspI	ATTAAT	1 cut(s)	731
XapI	RAATTY	3 cut(s)	502, 1016, 1616
XmiI	GTMKAC	3 cut(s)	652, 1742, 2286
XmnI	GAANNNNTTC	2 cut(s)	1358, 1560
XspI	CTAG	6 cut(s)	354, 621, 1047, 1070, 1635, 2225
Zsp2I	ATGCAT	2 cut(s)	786, 1905

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.