Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7961612.1

Orthogroup ID

OG0008862

Physical Location & Seq

Genomic Coordinates Forward (+)

60 .. 503

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7961612.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

atgtctgagtctactaaacttccttcccatgcacaagaacacattgctgggatgtctctcaaacctaatctttctggcaaccatgaggaggtttcttgtgaaggagaagagattaactttcataaatatatggtgcctagccaaagcaagaatgaagttgttgcttctggtgaagtacatgctgaagaggtaacgaaatcaaaaaaagcggataacaagcagaagcctaaaaagaaccgcaaagcggttgattcaagtggctgctcatgggatctgcaaagtccactcaagtcgcatgataaccaagggattggtgaaaagtctgaagctagcaaatctagctccatgcaaccgcaaggatcaatatctaatgttgatggtgttgtgcctcagcccgaggaaattgttcccaagaaagtttccaaaactgggactaaagcccaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

148

Amino Acids

15.98

Weight (kDa)

7.02

Isoelectric Point (pI)

63.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008862)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25060 FvH4_4g25060 FvH4_4g25060 FvH4_4g25060
malus_domestica	MD13G1106900.v1.1 MD16G1107000.v1.1
prunus_persica	Prupe.1G239400_v2.0.a1 Prupe.1G239400_v2.0.a1
pyrus_communis	pycom13g09270 pycom16g09110
rosa_chinensis	RchiOBHm_Chr4g0432241
rosa_laevigata	RLG00000006860
rosa_multiflora	Rmu_co7961612.1_g000001 Rmu_sc0001084.1_g000049 Rmu_sc0039253.1_g000001
rosa_roxburghii	Rroxscaffold_5G00373690
rosa_rugosa	Rorug04G0255400 Rorug04G0255500
rosa_samantha	Rh4AG312600 Rh4BG320100 Rh4CG335300 Rh4DG315500
rosa_wichuraiana	Rw4G027170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	133
AccI	GTMKAC	1 cut(s)	11
AciI	CCGC	4 cut(s)	209, 238, 245, 353
AclWI	GGATC	2 cut(s)	279, 367
AcuI	CTGAAG	2 cut(s)	204, 345
AfaI	GTAC	1 cut(s)	177
AfiI	CCNNNNNNNGG	3 cut(s)	88, 244, 429
AgsI	TTSAA	1 cut(s)	255
AluBI	AGCT	2 cut(s)	329, 342
AluI	AGCT	2 cut(s)	329, 342
Alw26I	GTCTC	1 cut(s)	60
AlwI	GGATC	2 cut(s)	279, 367
Ama87I	CYCGRG	1 cut(s)	395
ApeKI	GCWGC	1 cut(s)	261
Asp700I	GAANNNNTTC	1 cut(s)	405
AsuHPI	GGTGA	2 cut(s)	182, 326
AsuNHI	GCTAGC	1 cut(s)	329
AvaI	CYCGRG	1 cut(s)	395
BanI	GGYRCC	1 cut(s)	133
BbvCI	CCTCAGC	1 cut(s)	390
BbvI	GCAGC	1 cut(s)	248
BccI	CCATC	1 cut(s)	371
BcoDI	GTCTC	1 cut(s)	60
BfaI	CTAG	3 cut(s)	138, 330, 339
BisI	GCNGC	1 cut(s)	262
BlsI	GCNGC	1 cut(s)	263
BmeT110I	CYCGRG	1 cut(s)	395
BmiI	GGNNCC	1 cut(s)	135
BmrI	ACTGGG	1 cut(s)	438
BmtI	GCTAGC	1 cut(s)	333
BmuI	ACTGGG	1 cut(s)	438
Bpu10I	CCTNAGC	1 cut(s)	390
BpuEI	CTTGAG	1 cut(s)	272
BsaBI	GATNNNNATC	1 cut(s)	364
BsaJI	CCNNGG	2 cut(s)	304, 396
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 244, 429
Bse1I	ACTGG	1 cut(s)	433
Bse3DI	GCAATG	1 cut(s)	42
Bse8I	GATNNNNATC	1 cut(s)	364
BseDI	CCNNGG	2 cut(s)	304, 396
BseGI	GGATG	1 cut(s)	57
BseJI	GATNNNNATC	1 cut(s)	364
BseLI	CCNNNNNNNGG	3 cut(s)	88, 244, 429
BseMI	GCAATG	1 cut(s)	42
BseMII	CTCAG	1 cut(s)	404
BseNI	ACTGG	1 cut(s)	433
BseRI	GAGGAG	1 cut(s)	101
BseXI	GCAGC	1 cut(s)	248
BseYI	CCCAGC	1 cut(s)	47
BshNI	GGYRCC	1 cut(s)	133
BsiHKCI	CYCGRG	1 cut(s)	395
BslI	CCNNNNNNNGG	3 cut(s)	88, 244, 429
BsmAI	GTCTC	1 cut(s)	60
BsoBI	CYCGRG	1 cut(s)	395
Bsp143I	GATC	2 cut(s)	271, 359
BspACI	CCGC	4 cut(s)	209, 238, 245, 353
BspCNI	CTCAG	1 cut(s)	403
BspLI	GGNNCC	1 cut(s)	135
BspOI	GCTAGC	1 cut(s)	333
BspPI	GGATC	2 cut(s)	279, 367
BspT107I	GGYRCC	1 cut(s)	133
BsrDI	GCAATG	1 cut(s)	42
BsrI	ACTGG	1 cut(s)	433
BssECI	CCNNGG	2 cut(s)	304, 396
BssMI	GATC	2 cut(s)	271, 359
BssT1I	CCWWGG	1 cut(s)	304
Bst6I	CTCTTC	2 cut(s)	102, 180
BstC8I	GCNNGC	1 cut(s)	331
BstDEI	CTNAG	2 cut(s)	6, 390
BstF5I	GGATG	1 cut(s)	57
BstKTI	GATC	2 cut(s)	274, 362
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	2 cut(s)	271, 359
BstMWI	GCNNNNNNNGC	1 cut(s)	339
BstNSI	RCATGY	1 cut(s)	182
BstV1I	GCAGC	1 cut(s)	248
BstX2I	RGATCY	1 cut(s)	271
BstXI	CCANNNNNNTGG	1 cut(s)	311
BstYI	RGATCY	1 cut(s)	271
BtsCI	GGATG	1 cut(s)	57
Cac8I	GCNNGC	1 cut(s)	331
Csp6I	GTAC	1 cut(s)	176
CviAII	CATG	6 cut(s)	29, 83, 179, 267, 296, 346
CviJI	RGCY	7 cut(s)	141, 226, 261, 329, 342, 394, 440
CviKI_1	RGCY	7 cut(s)	141, 226, 261, 329, 342, 394, 440
CviQI	GTAC	1 cut(s)	176
DdeI	CTNAG	2 cut(s)	6, 390
DpnI	GATC	2 cut(s)	273, 361
DpnII	GATC	2 cut(s)	271, 359
Eam1104I	CTCTTC	2 cut(s)	102, 180
EarI	CTCTTC	2 cut(s)	102, 180
Eco130I	CCWWGG	1 cut(s)	304
Eco57I	CTGAAG	2 cut(s)	204, 345
Eco88I	CYCGRG	1 cut(s)	395
EcoT14I	CCWWGG	1 cut(s)	304
ErhI	CCWWGG	1 cut(s)	304
FaeI	CATG	6 cut(s)	32, 86, 182, 270, 299, 349
FaiI	YATR	9 cut(s)	30, 84, 123, 129, 131, 180, 268, 297, 347
FatI	CATG	6 cut(s)	28, 82, 178, 266, 295, 345
FblI	GTMKAC	1 cut(s)	11
Fnu4HI	GCNGC	1 cut(s)	262
FokI	GGATG	1 cut(s)	64
Fsp4HI	GCNGC	1 cut(s)	262
FspBI	CTAG	3 cut(s)	138, 330, 339
GluI	GCNGC	1 cut(s)	262
GsaI	CCCAGC	1 cut(s)	51
Hin1II	CATG	6 cut(s)	32, 86, 182, 270, 299, 349
HinfI	GANTC	2 cut(s)	8, 251
HphI	GGTGA	2 cut(s)	182, 326
Hpy166II	GTNNAC	2 cut(s)	12, 284
Hpy188I	TCNGA	2 cut(s)	7, 325
Hpy8I	GTNNAC	2 cut(s)	12, 284
HpyAV	CCTTC	2 cut(s)	33, 95
HpyCH4V	TGCA	3 cut(s)	32, 277, 349
HpyF10VI	GCNNNNNNNGC	1 cut(s)	339
HpyF3I	CTNAG	2 cut(s)	6, 390
Hsp92II	CATG	6 cut(s)	32, 86, 182, 270, 299, 349
Kzo9I	GATC	2 cut(s)	271, 359
LmnI	GCTCC	1 cut(s)	347
LpnPI	CCDG	4 cut(s)	33, 60, 153, 414
Lsp1109I	GCAGC	1 cut(s)	248
MaeI	CTAG	3 cut(s)	138, 330, 339
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	2 cut(s)	273, 361
MboI	GATC	2 cut(s)	271, 359
MboII	GAAGA	2 cut(s)	119, 197
MflI	RGATCY	1 cut(s)	271
MluCI	AATT	1 cut(s)	402
MlyI	GAGTC	1 cut(s)	17
MnlI	CCTC	5 cut(s)	79, 82, 181, 391, 399
MroXI	GAANNNNTTC	1 cut(s)	405
MseI	TTAA	1 cut(s)	114
MwoI	GCNNNNNNNGC	1 cut(s)	339
NdeII	GATC	2 cut(s)	271, 359
NheI	GCTAGC	1 cut(s)	329
NlaIII	CATG	6 cut(s)	32, 86, 182, 270, 299, 349
NlaIV	GGNNCC	1 cut(s)	135
NspI	RCATGY	1 cut(s)	182
PdmI	GAANNNNTTC	1 cut(s)	405
PfeI	GAWTC	1 cut(s)	251
PkrI	GCNGC	1 cut(s)	263
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PspFI	CCCAGC	1 cut(s)	47
PspN4I	GGNNCC	1 cut(s)	135
PsuI	RGATCY	1 cut(s)	271
RsaI	GTAC	1 cut(s)	177
RsaNI	GTAC	1 cut(s)	176
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	1 cut(s)	262
Sau3AI	GATC	2 cut(s)	271, 359
SchI	GAGTC	1 cut(s)	17
SetI	ASST	5 cut(s)	67, 93, 192, 331, 344
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	1 cut(s)	402
SsiI	CCGC	4 cut(s)	209, 238, 245, 353
SspMI	CTAG	3 cut(s)	138, 330, 339
StyI	CCWWGG	1 cut(s)	304
TasI	AATT	1 cut(s)	402
TatI	WGTACW	1 cut(s)	175
TfiI	GAWTC	1 cut(s)	251
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TseI	GCWGC	1 cut(s)	261
TspDTI	ATGAA	2 cut(s)	110, 168
XceI	RCATGY	1 cut(s)	182
XmiI	GTMKAC	1 cut(s)	11
XmnI	GAANNNNTTC	1 cut(s)	405
XspI	CTAG	3 cut(s)	138, 330, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.