Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039253.1

Orthogroup ID

OG0008862

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 727

Gene Structure 727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039253.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 727 bp

ctattatagagaagaggggtgaaattcagcatggttcccacaattttggttctggaatttgtgataatcctttggttagtgcggctgatcgtccttttaatgttcttagcaaaaggttgttcagtgttgatgattcggtaccattgctactagagggcaagaagaataatattgtagaccagaatggttcactggattctggtagagaaactttaaaagatttggagatgggaatcaagcattctgatgatgaccattgcaaaacttcatttgatgagacaatcaatgggctagaacctaaaacacaggcggatcgcagcctttgtagtgaggggtttagagttcccacagcacaagaacacaaagaagatacctcaaggaaagaaataagtgaagccaaaagcagcgcatctttgggaaaagcttcaccttcttcaaagaatagacaacagaatgctaggcaaaaaagtgaagagacagcacatctgaaagaaaatgacactccagtttatggattcaatgaagaacagtcgcagatagatattgtacctccagaagactcattaggaaatgagggtggagatgttccctgtgatacggtggcagtaaacagaactactacagaagaacctcgcaaggcttcagcttctaatatggataacaggtcagattctggacttcataggaacaatgatacatacaaagaaactgaagtttcaggaaaaca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

241

Amino Acids

26.44

Weight (kDa)

5.04

Isoelectric Point (pI)

45.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008862)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25060 FvH4_4g25060 FvH4_4g25060 FvH4_4g25060
malus_domestica	MD13G1106900.v1.1 MD16G1107000.v1.1
prunus_persica	Prupe.1G239400_v2.0.a1 Prupe.1G239400_v2.0.a1
pyrus_communis	pycom13g09270 pycom16g09110
rosa_chinensis	RchiOBHm_Chr4g0432241
rosa_laevigata	RLG00000006860
rosa_multiflora	Rmu_co7961612.1_g000001 Rmu_sc0001084.1_g000049 Rmu_sc0039253.1_g000001
rosa_roxburghii	Rroxscaffold_5G00373690
rosa_rugosa	Rorug04G0255400 Rorug04G0255500
rosa_samantha	Rh4AG312600 Rh4BG320100 Rh4CG335300 Rh4DG315500
rosa_wichuraiana	Rw4G027170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	138
AccB1I	GGYRCC	1 cut(s)	138
AccB7I	CCANNNNNTGG	1 cut(s)	511
AccI	GTMKAC	1 cut(s)	176
AciI	CCGC	2 cut(s)	82, 310
AclWI	GGATC	1 cut(s)	320
AcsI	RAATTY	2 cut(s)	23, 56
AcuI	CTGAAG	1 cut(s)	626
AfaI	GTAC	2 cut(s)	140, 548
AfiI	CCNNNNNNNGG	1 cut(s)	511
AgsI	TTSAA	2 cut(s)	437, 519
AluBI	AGCT	2 cut(s)	424, 646
AluI	AGCT	2 cut(s)	424, 646
Alw26I	GTCTC	2 cut(s)	271, 469
AlwI	GGATC	1 cut(s)	320
AlwNI	CAGNNNCTG	1 cut(s)	673
ApeKI	GCWGC	2 cut(s)	317, 404
ApoI	RAATTY	2 cut(s)	23, 56
Asp700I	GAANNNNTTC	1 cut(s)	423
Asp718I	GGTACC	1 cut(s)	138
AspLEI	GCGC	1 cut(s)	409
AsuHPI	GGTGA	2 cut(s)	31, 419
BanI	GGYRCC	1 cut(s)	138
BbsI	GAAGAC	1 cut(s)	563
BbvI	GCAGC	2 cut(s)	329, 416
BccI	CCATC	1 cut(s)	222
BcoDI	GTCTC	2 cut(s)	271, 469
BfaI	CTAG	3 cut(s)	151, 292, 458
BfmI	CTRYAG	1 cut(s)	620
BisI	GCNGC	3 cut(s)	83, 318, 405
BlsI	GCNGC	3 cut(s)	84, 319, 406
BmiI	GGNNCC	2 cut(s)	36, 140
BmsI	GCATC	1 cut(s)	418
BpiI	GAAGAC	1 cut(s)	563
BpmI	CTGGAG	2 cut(s)	488, 536
BpuEI	CTTGAG	1 cut(s)	360
BsaBI	GATNNNNATC	1 cut(s)	232
Bsc4I	CCNNNNNNNGG	1 cut(s)	511
Bse1I	ACTGG	2 cut(s)	197, 505
Bse3DI	GCAATG	2 cut(s)	142, 255
Bse8I	GATNNNNATC	1 cut(s)	232
BseJI	GATNNNNATC	1 cut(s)	232
BseLI	CCNNNNNNNGG	1 cut(s)	511
BseMI	GCAATG	2 cut(s)	142, 255
BseNI	ACTGG	2 cut(s)	197, 505
BseXI	GCAGC	2 cut(s)	329, 416
BshNI	GGYRCC	1 cut(s)	138
BslI	CCNNNNNNNGG	1 cut(s)	511
BsmAI	GTCTC	2 cut(s)	271, 469
BsmI	GAATGC	2 cut(s)	240, 459
Bsp143I	GATC	2 cut(s)	87, 312
BspACI	CCGC	2 cut(s)	82, 310
BspLI	GGNNCC	2 cut(s)	36, 140
BspPI	GGATC	1 cut(s)	320
BspT107I	GGYRCC	1 cut(s)	138
BsrDI	GCAATG	2 cut(s)	142, 255
BsrI	ACTGG	2 cut(s)	197, 505
BssMI	GATC	2 cut(s)	87, 312
Bst4CI	ACNGT	2 cut(s)	530, 600
Bst6I	CTCTTC	2 cut(s)	7, 467
BstDEI	CTNAG	1 cut(s)	106
BstHHI	GCGC	1 cut(s)	409
BstKTI	GATC	2 cut(s)	90, 315
BstMAI	GTCTC	2 cut(s)	271, 469
BstMBI	GATC	2 cut(s)	87, 312
BstSFI	CTRYAG	1 cut(s)	620
BstV1I	GCAGC	2 cut(s)	329, 416
BstV2I	GAAGAC	1 cut(s)	563
BstXI	CCANNNNNNTGG	1 cut(s)	46
BtsIMutI	CAGTG	2 cut(s)	129, 190
CaiI	CAGNNNCTG	1 cut(s)	673
CfoI	GCGC	1 cut(s)	409
Csp6I	GTAC	2 cut(s)	139, 547
CviAII	CATG	1 cut(s)	31
CviJI	RGCY	7 cut(s)	85, 291, 320, 397, 424, 640, 646
CviKI_1	RGCY	7 cut(s)	85, 291, 320, 397, 424, 640, 646
CviQI	GTAC	2 cut(s)	139, 547
DdeI	CTNAG	1 cut(s)	106
DpnI	GATC	2 cut(s)	89, 314
DpnII	GATC	2 cut(s)	87, 312
DraI	TTTAAA	1 cut(s)	215
Eam1104I	CTCTTC	2 cut(s)	7, 467
EarI	CTCTTC	2 cut(s)	7, 467
EciI	GGCGGA	1 cut(s)	325
Eco57I	CTGAAG	1 cut(s)	626
FaeI	CATG	1 cut(s)	34
FaiI	YATR	6 cut(s)	7, 32, 512, 655, 683, 699
FatI	CATG	1 cut(s)	30
FblI	GTMKAC	1 cut(s)	176
Fnu4HI	GCNGC	3 cut(s)	83, 318, 405
Fsp4HI	GCNGC	3 cut(s)	83, 318, 405
FspBI	CTAG	3 cut(s)	151, 292, 458
GlaI	GCGC	1 cut(s)	408
GluI	GCNGC	3 cut(s)	83, 318, 405
GsuI	CTGGAG	2 cut(s)	488, 536
HhaI	GCGC	1 cut(s)	409
Hin1II	CATG	1 cut(s)	34
Hin6I	GCGC	1 cut(s)	407
HinP1I	GCGC	1 cut(s)	407
HindIII	AAGCTT	1 cut(s)	422
HinfI	GANTC	6 cut(s)	133, 196, 233, 515, 559, 670
HphI	GGTGA	2 cut(s)	31, 419
Hpy166II	GTNNAC	3 cut(s)	177, 190, 609
Hpy188I	TCNGA	3 cut(s)	246, 488, 669
Hpy188III	TCNNGA	4 cut(s)	53, 553, 674, 719
Hpy8I	GTNNAC	3 cut(s)	177, 190, 609
HpyAV	CCTTC	1 cut(s)	440
HpyCH4III	ACNGT	2 cut(s)	530, 600
HpyCH4V	TGCA	1 cut(s)	260
HpyF3I	CTNAG	1 cut(s)	106
Hsp92II	CATG	1 cut(s)	34
HspAI	GCGC	1 cut(s)	407
KpnI	GGTACC	1 cut(s)	142
Kzo9I	GATC	2 cut(s)	87, 312
Lsp1109I	GCAGC	2 cut(s)	329, 416
LweI	GCATC	1 cut(s)	418
MaeI	CTAG	3 cut(s)	151, 292, 458
MalI	GATC	2 cut(s)	89, 314
MboI	GATC	2 cut(s)	87, 312
MboII	GAAGA	8 cut(s)	24, 174, 379, 425, 484, 535, 568, 637
MluCI	AATT	3 cut(s)	23, 42, 56
MlyI	GAGTC	1 cut(s)	553
MnlI	CCTC	7 cut(s)	8, 147, 324, 384, 560, 567, 641
MroXI	GAANNNNTTC	1 cut(s)	423
MseI	TTAA	2 cut(s)	98, 214
MslI	CAYNNNNRTG	1 cut(s)	245
Mva1269I	GAATGC	2 cut(s)	240, 459
NdeII	GATC	2 cut(s)	87, 312
NlaIII	CATG	1 cut(s)	34
NlaIV	GGNNCC	2 cut(s)	36, 140
PctI	GAATGC	2 cut(s)	240, 459
PdmI	GAANNNNTTC	1 cut(s)	423
PfeI	GAWTC	5 cut(s)	133, 196, 233, 515, 670
PflMI	CCANNNNNTGG	1 cut(s)	511
PkrI	GCNGC	3 cut(s)	84, 319, 406
PleI	GAGTC	1 cut(s)	553
PpsI	GAGTC	1 cut(s)	553
PspN4I	GGNNCC	2 cut(s)	36, 140
PstNI	CAGNNNCTG	1 cut(s)	673
RsaI	GTAC	2 cut(s)	140, 548
RsaNI	GTAC	2 cut(s)	139, 547
RseI	CAYNNNNRTG	1 cut(s)	245
SaqAI	TTAA	2 cut(s)	98, 214
SatI	GCNGC	3 cut(s)	83, 318, 405
Sau3AI	GATC	2 cut(s)	87, 312
SchI	GAGTC	1 cut(s)	553
SetI	ASST	9 cut(s)	118, 300, 376, 426, 432, 552, 633, 648, 667
SfaNI	GCATC	1 cut(s)	418
SfcI	CTRYAG	1 cut(s)	620
SmiMI	CAYNNNNRTG	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	375
SmoI	CTYRAG	1 cut(s)	375
Sse9I	AATT	3 cut(s)	23, 42, 56
SsiI	CCGC	2 cut(s)	82, 310
SspI	AATATT	1 cut(s)	171
SspMI	CTAG	3 cut(s)	151, 292, 458
TaaI	ACNGT	2 cut(s)	530, 600
TasI	AATT	3 cut(s)	23, 42, 56
TauI	GCSGC	1 cut(s)	85
TfiI	GAWTC	5 cut(s)	133, 196, 233, 515, 670
Tru1I	TTAA	2 cut(s)	98, 214
Tru9I	TTAA	2 cut(s)	98, 214
TscAI	CASTG	2 cut(s)	129, 197
TseI	GCWGC	2 cut(s)	317, 404
TspDTI	ATGAA	3 cut(s)	257, 536, 670
TspRI	CASTG	2 cut(s)	129, 197
Van91I	CCANNNNNTGG	1 cut(s)	511
XapI	RAATTY	2 cut(s)	23, 56
XmiI	GTMKAC	1 cut(s)	176
XmnI	GAANNNNTTC	1 cut(s)	423
XspI	CTAG	3 cut(s)	151, 292, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.