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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g25060 FvH4_4g25060 FvH4_4g25060 FvH4_4g25060 |
| malus_domestica | MD13G1106900.v1.1 MD16G1107000.v1.1 |
| prunus_persica | Prupe.1G239400_v2.0.a1 Prupe.1G239400_v2.0.a1 |
| pyrus_communis | pycom13g09270 pycom16g09110 |
| rosa_chinensis | RchiOBHm_Chr4g0432241 |
| rosa_laevigata | RLG00000006860 |
| rosa_multiflora | Rmu_co7961612.1_g000001 Rmu_sc0001084.1_g000049 Rmu_sc0039253.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00373690 |
| rosa_rugosa | Rorug04G0255400 Rorug04G0255500 |
| rosa_samantha | Rh4AG312600 Rh4BG320100 Rh4CG335300 Rh4DG315500 |
| rosa_wichuraiana | Rw4G027170 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 3029 |
| Acc36I | ACCTGC | 1 cut(s) | 3029 |
| AccB1I | GGYRCC | 2 cut(s) | 2926, 3578 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 785, 2596 |
| AccI | GTMKAC | 5 cut(s) | 243, 450, 1558, 2804, 3762 |
| AccII | CGCG | 1 cut(s) | 808 |
| AciI | CCGC | 7 cut(s) | 21, 584, 808, 3002, 3146, 3690, 3783 |
| AclWI | GGATC | 6 cut(s) | 594, 2624, 2637, 3072, 3160, 3658 |
| AcoI | YGGCCR | 2 cut(s) | 72, 3441 |
| AcuI | CTGAAG | 6 cut(s) | 900, 1005, 1671, 2997, 3138, 3570 |
| AcyI | GRCGYC | 1 cut(s) | 240 |
| AfaI | GTAC | 9 cut(s) | 478, 822, 1342, 1968, 2196, 2358, 2542, 2970, 3533 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 785, 2596, 2881, 3222, 3666 |
| AgeI | ACCGGT | 1 cut(s) | 2132 |
| AjnI | CCWGG | 5 cut(s) | 1394, 1693, 1785, 2625, 3813 |
| AloI | GAACNNNNNNTCC | 1 cut(s) | 34 |
| Alw21I | GWGCWC | 2 cut(s) | 20, 3509 |
| Alw26I | GTCTC | 5 cut(s) | 88, 545, 743, 2777, 2853 |
| AlwI | GGATC | 6 cut(s) | 594, 2624, 2637, 3072, 3160, 3658 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 947 |
| Ama87I | CYCGRG | 1 cut(s) | 13 |
| AoxI | GGCC | 5 cut(s) | 72, 3312, 3441, 3522, 3771 |
| ApeKI | GCWGC | 6 cut(s) | 678, 1457, 2663, 2666, 3054, 3785 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2755, 2787 |
| AseI | ATTAAT | 1 cut(s) | 1515 |
| AsiGI | ACCGGT | 1 cut(s) | 2132 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 697, 1711, 1725, 3454, 3828 |
| AspLEI | GCGC | 5 cut(s) | 683, 1089, 1215, 1586, 3291 |
| AspS9I | GGNCC | 4 cut(s) | 178, 1565, 3312, 3523 |
| AsuII | TTCGAA | 1 cut(s) | 147 |
| AsuNHI | GCTAGC | 1 cut(s) | 3122 |
| AvaI | CYCGRG | 1 cut(s) | 13 |
| AvaII | GGWCC | 2 cut(s) | 178, 1565 |
| AxyI | CCTNAGG | 1 cut(s) | 3189 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 861, 894 |
| BalI | TGGCCA | 2 cut(s) | 74, 3443 |
| BamHI | GGATCC | 1 cut(s) | 2629 |
| BanI | GGYRCC | 2 cut(s) | 2926, 3578 |
| BanII | GRGCYC | 2 cut(s) | 20, 3509 |
| BauI | CACGAG | 1 cut(s) | 52 |
| BbsI | GAAGAC | 5 cut(s) | 837, 1545, 1895, 2123, 3813 |
| Bbv12I | GWGCWC | 2 cut(s) | 20, 3509 |
| BbvCI | CCTCAGC | 1 cut(s) | 3183 |
| BbvI | GCAGC | 6 cut(s) | 690, 1469, 2675, 2678, 3041, 3797 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 400, 434, 1420, 1454, 1592, 1626 |
| BciT130I | CCWGG | 5 cut(s) | 1396, 1695, 1787, 2627, 3815 |
| BciVI | GTATCC | 5 cut(s) | 1012, 1834, 2044, 2266, 2434 |
| BclI | TGATCA | 3 cut(s) | 526, 1248, 2713 |
| BcoDI | GTCTC | 5 cut(s) | 88, 545, 743, 2777, 2853 |
| BfmI | CTRYAG | 3 cut(s) | 894, 1323, 1506 |
| BfuAI | ACCTGC | 1 cut(s) | 3029 |
| BfuI | GTATCC | 5 cut(s) | 1012, 1834, 2044, 2266, 2434 |
| BglII | AGATCT | 2 cut(s) | 1490, 2584 |
| BisI | GCNGC | 7 cut(s) | 679, 1458, 2664, 2667, 3055, 3783, 3786 |
| BlpI | GCTNAGC | 2 cut(s) | 732, 3508 |
| BlsI | GCNGC | 7 cut(s) | 680, 1459, 2665, 2668, 3056, 3784, 3787 |
| BmcAI | AGTACT | 1 cut(s) | 1342 |
| Bme1390I | CCNGG | 5 cut(s) | 1396, 1695, 1787, 2627, 3815 |
| Bme18I | GGWCC | 2 cut(s) | 178, 1565 |
| BmeT110I | CYCGRG | 1 cut(s) | 13 |
| BmgT120I | GGNCC | 4 cut(s) | 178, 1565, 3312, 3523 |
| BmrFI | CCNGG | 5 cut(s) | 1396, 1695, 1787, 2627, 3815 |
| BmrI | ACTGGG | 1 cut(s) | 3231 |
| BmtI | GCTAGC | 1 cut(s) | 3126 |
| BmuI | ACTGGG | 1 cut(s) | 3231 |
| BpiI | GAAGAC | 5 cut(s) | 837, 1545, 1895, 2123, 3813 |
| BpmI | CTGGAG | 4 cut(s) | 762, 810, 2508, 2573 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3183 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 732, 3508 |
| Bpu14I | TTCGAA | 1 cut(s) | 147 |
| BpuEI | CTTGAG | 2 cut(s) | 634, 3065 |
| BsaBI | GATNNNNATC | 3 cut(s) | 506, 525, 3157 |
| BsaHI | GRCGYC | 1 cut(s) | 240 |
| BsaJI | CCNNGG | 7 cut(s) | 24, 1395, 1786, 1893, 2121, 3097, 3273 |
| BsaWI | WCCGGW | 2 cut(s) | 180, 2132 |
| BsaXI | ACNNNNNCTCC | 5 cut(s) | 32, 1527, 1557, 3676, 3706 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 785, 2596, 2881, 3222, 3666 |
| Bse118I | RCCGGY | 2 cut(s) | 2132, 3715 |
| Bse1I | ACTGG | 4 cut(s) | 779, 3226, 3401, 3444 |
| Bse21I | CCTNAGG | 1 cut(s) | 3189 |
| Bse3DI | GCAATG | 6 cut(s) | 416, 529, 1776, 2494, 2835, 3649 |
| Bse8I | GATNNNNATC | 3 cut(s) | 506, 525, 3157 |
| BseBI | CCWGG | 5 cut(s) | 1396, 1695, 1787, 2627, 3815 |
| BseDI | CCNNGG | 7 cut(s) | 24, 1395, 1786, 1893, 2121, 3097, 3273 |
| BseGI | GGATG | 5 cut(s) | 34, 133, 1669, 2850, 3343 |
| BseJI | GATNNNNATC | 3 cut(s) | 506, 525, 3157 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 785, 2596, 2881, 3222, 3666 |
| BseMI | GCAATG | 6 cut(s) | 416, 529, 1776, 2494, 2835, 3649 |
| BseNI | ACTGG | 4 cut(s) | 779, 3226, 3401, 3444 |
| BseRI | GAGGAG | 3 cut(s) | 2246, 2408, 2894 |
| BseXI | GCAGC | 6 cut(s) | 690, 1469, 2675, 2678, 3041, 3797 |
| BseYI | CCCAGC | 1 cut(s) | 2840 |
| BsgI | GTGCAG | 3 cut(s) | 1424, 1929, 2157 |
| Bsh1236I | CGCG | 1 cut(s) | 808 |
| BshFI | GGCC | 5 cut(s) | 74, 3314, 3443, 3524, 3773 |
| BshNI | GGYRCC | 2 cut(s) | 2926, 3578 |
| BshTI | ACCGGT | 1 cut(s) | 2132 |
| BsiHKAI | GWGCWC | 2 cut(s) | 20, 3509 |
| BsiHKCI | CYCGRG | 1 cut(s) | 13 |
| BsiSI | CCGG | 4 cut(s) | 87, 181, 2133, 3716 |
| BslFI | GGGAC | 1 cut(s) | 3238 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 785, 2596, 2881, 3222, 3666 |
| BsmAI | GTCTC | 5 cut(s) | 88, 545, 743, 2777, 2853 |
| BsmBI | CGTCTC | 1 cut(s) | 88 |
| BsmFI | GGGAC | 1 cut(s) | 3238 |
| BsmI | GAATGC | 1 cut(s) | 514 |
| BsnI | GGCC | 5 cut(s) | 74, 3314, 3443, 3524, 3773 |
| BsoBI | CYCGRG | 1 cut(s) | 13 |
| Bsp119I | TTCGAA | 1 cut(s) | 147 |
| Bsp1286I | GDGCHC | 2 cut(s) | 20, 3509 |
| Bsp1407I | TGTACA | 3 cut(s) | 1966, 2194, 2356 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 732, 3508 |
| BspACI | CCGC | 7 cut(s) | 21, 584, 808, 3002, 3146, 3690, 3783 |
| BspANI | GGCC | 5 cut(s) | 74, 3314, 3443, 3524, 3773 |
| BspFNI | CGCG | 1 cut(s) | 808 |
| BspHI | TCATGA | 1 cut(s) | 1957 |
| BspMAI | CTGCAG | 2 cut(s) | 1327, 1510 |
| BspMI | ACCTGC | 1 cut(s) | 3029 |
| BspOI | GCTAGC | 1 cut(s) | 3126 |
| BspPI | GGATC | 6 cut(s) | 594, 2624, 2637, 3072, 3160, 3658 |
| BspQI | GCTCTTC | 1 cut(s) | 3497 |
| BspT104I | TTCGAA | 1 cut(s) | 147 |
| BspT107I | GGYRCC | 2 cut(s) | 2926, 3578 |
| BsrDI | GCAATG | 6 cut(s) | 416, 529, 1776, 2494, 2835, 3649 |
| BsrFI | RCCGGY | 2 cut(s) | 2132, 3715 |
| BsrGI | TGTACA | 3 cut(s) | 1966, 2194, 2356 |
| BsrI | ACTGG | 4 cut(s) | 779, 3226, 3401, 3444 |
| BssAI | RCCGGY | 2 cut(s) | 2132, 3715 |
| BssECI | CCNNGG | 7 cut(s) | 24, 1395, 1786, 1893, 2121, 3097, 3273 |
| BssNI | GRCGYC | 1 cut(s) | 240 |
| BssSI | CACGAG | 1 cut(s) | 52 |
| BssT1I | CCWWGG | 4 cut(s) | 1893, 2121, 3097, 3273 |
| Bst2BI | CACGAG | 1 cut(s) | 52 |
| Bst2UI | CCWGG | 5 cut(s) | 1396, 1695, 1787, 2627, 3815 |
| Bst6I | CTCTTC | 9 cut(s) | 281, 741, 1479, 1630, 1730, 2601, 2895, 2973, 3497 |
| BstACI | GRCGYC | 1 cut(s) | 240 |
| BstAUI | TGTACA | 3 cut(s) | 1966, 2194, 2356 |
| BstBI | TTCGAA | 1 cut(s) | 147 |
| BstC8I | GCNNGC | 7 cut(s) | 1783, 2671, 2694, 2782, 3124, 3583, 3846 |
| BstF5I | GGATG | 5 cut(s) | 34, 133, 1669, 2850, 3343 |
| BstFNI | CGCG | 1 cut(s) | 808 |
| BstHHI | GCGC | 5 cut(s) | 683, 1089, 1215, 1586, 3291 |
| BstMAI | GTCTC | 5 cut(s) | 88, 545, 743, 2777, 2853 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 3132, 3495, 3504, 3779 |
| BstNI | CCWGG | 5 cut(s) | 1396, 1695, 1787, 2627, 3815 |
| BstNSI | RCATGY | 1 cut(s) | 2975 |
| BstSCI | CCNGG | 5 cut(s) | 1394, 1693, 1785, 2625, 3813 |
| BstSFI | CTRYAG | 3 cut(s) | 894, 1323, 1506 |
| BstUI | CGCG | 1 cut(s) | 808 |
| BstV1I | GCAGC | 6 cut(s) | 690, 1469, 2675, 2678, 3041, 3797 |
| BstV2I | GAAGAC | 5 cut(s) | 837, 1545, 1895, 2123, 3813 |
| BstX2I | RGATCY | 5 cut(s) | 1490, 2584, 2629, 3064, 3650 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 320, 3104 |
| BstYI | RGATCY | 5 cut(s) | 1490, 2584, 2629, 3064, 3650 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3189 |
| BsuI | GTATCC | 5 cut(s) | 1012, 1834, 2044, 2266, 2434 |
| BsuRI | GGCC | 5 cut(s) | 74, 3314, 3443, 3524, 3773 |
| BtsCI | GGATG | 5 cut(s) | 34, 133, 1669, 2850, 3343 |
| BtsI | GCAGTG | 1 cut(s) | 1030 |
| BveI | ACCTGC | 1 cut(s) | 3029 |
| Cac8I | GCNNGC | 7 cut(s) | 1783, 2671, 2694, 2782, 3124, 3583, 3846 |
| CaiI | CAGNNNCTG | 1 cut(s) | 947 |
| CciI | TCATGA | 1 cut(s) | 1957 |
| CfoI | GCGC | 5 cut(s) | 683, 1089, 1215, 1586, 3291 |
| Cfr10I | RCCGGY | 2 cut(s) | 2132, 3715 |
| Cfr13I | GGNCC | 4 cut(s) | 178, 1565, 3312, 3523 |
| CseI | GACGC | 2 cut(s) | 229, 3748 |
| Csp6I | GTAC | 9 cut(s) | 477, 821, 1341, 1967, 2195, 2357, 2541, 2969, 3532 |
| CspAI | ACCGGT | 1 cut(s) | 2132 |
| CviQI | GTAC | 9 cut(s) | 477, 821, 1341, 1967, 2195, 2357, 2541, 2969, 3532 |
| DraI | TTTAAA | 1 cut(s) | 489 |
| EaeI | YGGCCR | 2 cut(s) | 72, 3441 |
| Eam1104I | CTCTTC | 9 cut(s) | 281, 741, 1479, 1630, 1730, 2601, 2895, 2973, 3497 |
| EarI | CTCTTC | 9 cut(s) | 281, 741, 1479, 1630, 1730, 2601, 2895, 2973, 3497 |
| EciI | GGCGGA | 2 cut(s) | 10, 599 |
| Ecl136II | GAGCTC | 2 cut(s) | 18, 3507 |
| Eco130I | CCWWGG | 4 cut(s) | 1893, 2121, 3097, 3273 |
| Eco24I | GRGCYC | 2 cut(s) | 20, 3509 |
| Eco47I | GGWCC | 2 cut(s) | 178, 1565 |
| Eco53kI | GAGCTC | 2 cut(s) | 18, 3507 |
| Eco57I | CTGAAG | 6 cut(s) | 900, 1005, 1671, 2997, 3138, 3570 |
| Eco81I | CCTNAGG | 1 cut(s) | 3189 |
| Eco88I | CYCGRG | 1 cut(s) | 13 |
| EcoICRI | GAGCTC | 2 cut(s) | 18, 3507 |
| EcoRII | CCWGG | 5 cut(s) | 1394, 1693, 1785, 2625, 3813 |
| EcoT14I | CCWWGG | 4 cut(s) | 1893, 2121, 3097, 3273 |
| EcoT22I | ATGCAT | 1 cut(s) | 3250 |
| EcoT38I | GRGCYC | 2 cut(s) | 20, 3509 |
| ErhI | CCWWGG | 4 cut(s) | 1893, 2121, 3097, 3273 |
| Esp3I | CGTCTC | 1 cut(s) | 88 |
| FaqI | GGGAC | 1 cut(s) | 3238 |
| FbaI | TGATCA | 3 cut(s) | 526, 1248, 2713 |
| FblI | GTMKAC | 5 cut(s) | 243, 450, 1558, 2804, 3762 |
| Fnu4HI | GCNGC | 7 cut(s) | 679, 1458, 2664, 2667, 3055, 3783, 3786 |
| FokI | GGATG | 5 cut(s) | 41, 120, 1656, 2857, 3350 |
| FriOI | GRGCYC | 2 cut(s) | 20, 3509 |
| Fsp4HI | GCNGC | 7 cut(s) | 679, 1458, 2664, 2667, 3055, 3783, 3786 |
| GlaI | GCGC | 5 cut(s) | 682, 1088, 1214, 1585, 3290 |
| GluI | GCNGC | 7 cut(s) | 679, 1458, 2664, 2667, 3055, 3783, 3786 |
| GsaI | CCCAGC | 1 cut(s) | 2844 |
| GsuI | CTGGAG | 4 cut(s) | 762, 810, 2508, 2573 |
| HaeIII | GGCC | 5 cut(s) | 74, 3314, 3443, 3524, 3773 |
| HapII | CCGG | 4 cut(s) | 87, 181, 2133, 3716 |
| HgaI | GACGC | 2 cut(s) | 229, 3748 |
| HhaI | GCGC | 5 cut(s) | 683, 1089, 1215, 1586, 3291 |
| Hin1I | GRCGYC | 1 cut(s) | 240 |
| Hin6I | GCGC | 5 cut(s) | 681, 1087, 1213, 1584, 3289 |
| HinP1I | GCGC | 5 cut(s) | 681, 1087, 1213, 1584, 3289 |
| HincII | GTYRAC | 3 cut(s) | 244, 1383, 1976 |
| HindII | GTYRAC | 3 cut(s) | 244, 1383, 1976 |
| HindIII | AAGCTT | 3 cut(s) | 696, 1290, 3453 |
| HpaII | CCGG | 4 cut(s) | 87, 181, 2133, 3716 |
| Hpy99I | CGWCG | 1 cut(s) | 245 |
| HpyAV | CCTTC | 9 cut(s) | 166, 714, 1473, 1658, 2826, 2888, 3545, 3717, 3763 |
| HpyCH4IV | ACGT | 1 cut(s) | 1542 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 3132, 3495, 3504, 3779 |
| HpySE526I | ACGT | 1 cut(s) | 1542 |
| Hsp92I | GRCGYC | 1 cut(s) | 240 |
| HspAI | GCGC | 5 cut(s) | 681, 1087, 1213, 1584, 3289 |
| Ksp22I | TGATCA | 3 cut(s) | 526, 1248, 2713 |
| LguI | GCTCTTC | 1 cut(s) | 3497 |
| LmnI | GCTCC | 5 cut(s) | 23, 1465, 1696, 3140, 3823 |
| Lsp1109I | GCAGC | 6 cut(s) | 690, 1469, 2675, 2678, 3041, 3797 |
| MaeII | ACGT | 1 cut(s) | 1542 |
| MaeIII | GTNAC | 9 cut(s) | 34, 1228, 1822, 1855, 2083, 2305, 2324, 2621, 2983 |
| MflI | RGATCY | 5 cut(s) | 1490, 2584, 2629, 3064, 3650 |
| MhlI | GDGCHC | 2 cut(s) | 20, 3509 |
| MlsI | TGGCCA | 2 cut(s) | 74, 3443 |
| MluNI | TGGCCA | 2 cut(s) | 74, 3443 |
| MlyI | GAGTC | 5 cut(s) | 827, 945, 1754, 2810, 3436 |
| MmeI | TCCRAC | 3 cut(s) | 129, 2577, 2892 |
| Mox20I | TGGCCA | 2 cut(s) | 74, 3443 |
| Mph1103I | ATGCAT | 1 cut(s) | 3250 |
| MroXI | GAANNNNTTC | 5 cut(s) | 697, 1711, 1725, 3454, 3828 |
| MscI | TGGCCA | 2 cut(s) | 74, 3443 |
| MseI | TTAA | 7 cut(s) | 222, 488, 1124, 1515, 1638, 2907, 3405 |
| MslI | CAYNNNNRTG | 1 cut(s) | 519 |
| Msp20I | TGGCCA | 2 cut(s) | 74, 3443 |
| MspA1I | CMGCKG | 1 cut(s) | 1718 |
| MspI | CCGG | 4 cut(s) | 87, 181, 2133, 3716 |
| MspR9I | CCNGG | 5 cut(s) | 1396, 1695, 1787, 2627, 3815 |
| Mva1269I | GAATGC | 1 cut(s) | 514 |
| MvaI | CCWGG | 5 cut(s) | 1396, 1695, 1787, 2627, 3815 |
| MvnI | CGCG | 1 cut(s) | 808 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 3132, 3495, 3504, 3779 |
| NheI | GCTAGC | 1 cut(s) | 3122 |
| NmuCI | GTSAC | 8 cut(s) | 34, 1822, 1855, 2083, 2305, 2324, 2621, 2983 |
| NsiI | ATGCAT | 1 cut(s) | 3250 |
| NspI | RCATGY | 1 cut(s) | 2975 |
| NspV | TTCGAA | 1 cut(s) | 147 |
| PagI | TCATGA | 1 cut(s) | 1957 |
| PaqCI | CACCTGC | 1 cut(s) | 3029 |
| PciSI | GCTCTTC | 1 cut(s) | 3497 |
| PctI | GAATGC | 1 cut(s) | 514 |
| PdmI | GAANNNNTTC | 5 cut(s) | 697, 1711, 1725, 3454, 3828 |
| PflFI | GACNNNGTC | 1 cut(s) | 1563 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 785, 2596 |
| PinAI | ACCGGT | 1 cut(s) | 2132 |
| PkrI | GCNGC | 7 cut(s) | 680, 1459, 2665, 2668, 3056, 3784, 3787 |
| PleI | GAGTC | 5 cut(s) | 827, 945, 1754, 2809, 3435 |
| PpsI | GAGTC | 5 cut(s) | 827, 945, 1754, 2809, 3435 |
| PshBI | ATTAAT | 1 cut(s) | 1515 |
| Psp124BI | GAGCTC | 2 cut(s) | 20, 3509 |
| Psp6I | CCWGG | 5 cut(s) | 1394, 1693, 1785, 2625, 3813 |
| PspFI | CCCAGC | 1 cut(s) | 2840 |
| PspGI | CCWGG | 5 cut(s) | 1394, 1693, 1785, 2625, 3813 |
| PspPI | GGNCC | 4 cut(s) | 178, 1565, 3312, 3523 |
| PstI | CTGCAG | 2 cut(s) | 1327, 1510 |
| PstNI | CAGNNNCTG | 1 cut(s) | 947 |
| PsuI | RGATCY | 5 cut(s) | 1490, 2584, 2629, 3064, 3650 |
| PsyI | GACNNNGTC | 1 cut(s) | 1563 |
| PvuII | CAGCTG | 1 cut(s) | 1718 |
| RsaI | GTAC | 9 cut(s) | 478, 822, 1342, 1968, 2196, 2358, 2542, 2970, 3533 |
| RsaNI | GTAC | 9 cut(s) | 477, 821, 1341, 1967, 2195, 2357, 2541, 2969, 3532 |
| RseI | CAYNNNNRTG | 1 cut(s) | 519 |
| SacI | GAGCTC | 2 cut(s) | 20, 3509 |
| SalI | GTCGAC | 1 cut(s) | 242 |
| SapI | GCTCTTC | 1 cut(s) | 3497 |
| SaqAI | TTAA | 7 cut(s) | 222, 488, 1124, 1515, 1638, 2907, 3405 |
| SatI | GCNGC | 7 cut(s) | 679, 1458, 2664, 2667, 3055, 3783, 3786 |
| Sau96I | GGNCC | 4 cut(s) | 178, 1565, 3312, 3523 |
| ScaI | AGTACT | 1 cut(s) | 1342 |
| SchI | GAGTC | 5 cut(s) | 827, 945, 1754, 2810, 3436 |
| ScrFI | CCNGG | 5 cut(s) | 1396, 1695, 1787, 2627, 3815 |
| SduI | GDGCHC | 2 cut(s) | 20, 3509 |
| SfcI | CTRYAG | 3 cut(s) | 894, 1323, 1506 |
| SfuI | TTCGAA | 1 cut(s) | 147 |
| SgrAI | CRCCGGYG | 1 cut(s) | 2132 |
| SinI | GGWCC | 2 cut(s) | 178, 1565 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 519 |
| SmlI | CTYRAG | 2 cut(s) | 649, 3080 |
| SmoI | CTYRAG | 2 cut(s) | 649, 3080 |
| SsiI | CCGC | 7 cut(s) | 21, 584, 808, 3002, 3146, 3690, 3783 |
| SspI | AATATT | 1 cut(s) | 445 |
| SstI | GAGCTC | 2 cut(s) | 20, 3509 |
| StyD4I | CCNGG | 5 cut(s) | 1394, 1693, 1785, 2625, 3813 |
| StyI | CCWWGG | 4 cut(s) | 1893, 2121, 3097, 3273 |
| TaiI | ACGT | 1 cut(s) | 1545 |
| TaqI | TCGA | 7 cut(s) | 147, 163, 243, 410, 1430, 2391, 3801 |
| TatI | WGTACW | 7 cut(s) | 1340, 1966, 2194, 2356, 2540, 2968, 3531 |
| TauI | GCSGC | 1 cut(s) | 3785 |
| Tru1I | TTAA | 7 cut(s) | 222, 488, 1124, 1515, 1638, 2907, 3405 |
| Tru9I | TTAA | 7 cut(s) | 222, 488, 1124, 1515, 1638, 2907, 3405 |
| TseFI | GTSAC | 8 cut(s) | 34, 1822, 1855, 2083, 2305, 2324, 2621, 2983 |
| TseI | GCWGC | 6 cut(s) | 678, 1457, 2663, 2666, 3054, 3785 |
| Tsp45I | GTSAC | 8 cut(s) | 34, 1822, 1855, 2083, 2305, 2324, 2621, 2983 |
| TspGWI | ACGGA | 2 cut(s) | 126, 3383 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1563 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 785, 2596 |
| VpaK11BI | GGWCC | 2 cut(s) | 178, 1565 |
| VspI | ATTAAT | 1 cut(s) | 1515 |
| XceI | RCATGY | 1 cut(s) | 2975 |
| XmiI | GTMKAC | 5 cut(s) | 243, 450, 1558, 2804, 3762 |
| XmnI | GAANNNNTTC | 5 cut(s) | 697, 1711, 1725, 3454, 3828 |
| ZrmI | AGTACT | 1 cut(s) | 1342 |
| Zsp2I | ATGCAT | 1 cut(s) | 3250 |