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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g25060 FvH4_4g25060 FvH4_4g25060 FvH4_4g25060 |
| malus_domestica | MD13G1106900.v1.1 MD16G1107000.v1.1 |
| prunus_persica | Prupe.1G239400_v2.0.a1 Prupe.1G239400_v2.0.a1 |
| pyrus_communis | pycom13g09270 pycom16g09110 |
| rosa_chinensis | RchiOBHm_Chr4g0432241 |
| rosa_laevigata | RLG00000006860 |
| rosa_multiflora | Rmu_co7961612.1_g000001 Rmu_sc0001084.1_g000049 Rmu_sc0039253.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00373690 |
| rosa_rugosa | Rorug04G0255400 Rorug04G0255500 |
| rosa_samantha | Rh4AG312600 Rh4BG320100 Rh4CG335300 Rh4DG315500 |
| rosa_wichuraiana | Rw4G027170 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 3239 |
| AatII | GACGTC | 1 cut(s) | 36 |
| Acc36I | ACCTGC | 1 cut(s) | 3239 |
| Acc65I | GGTACC | 1 cut(s) | 412 |
| AccB1I | GGYRCC | 3 cut(s) | 412, 2755, 3407 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 785, 2425 |
| AccI | GTMKAC | 4 cut(s) | 243, 450, 2633, 3591 |
| AccII | CGCG | 1 cut(s) | 808 |
| AciI | CCGC | 9 cut(s) | 21, 584, 808, 2831, 2860, 2867, 2975, 3519, 3612 |
| AclWI | GGATC | 6 cut(s) | 594, 2453, 2466, 2901, 2989, 3487 |
| AcoI | YGGCCR | 2 cut(s) | 72, 3270 |
| AcsI | RAATTY | 8 cut(s) | 159, 297, 330, 1516, 2617, 3091, 3580, 3653 |
| AcuI | CTGAAG | 6 cut(s) | 900, 1005, 1662, 2826, 2967, 3399 |
| AcyI | GRCGYC | 2 cut(s) | 33, 240 |
| AfaI | GTAC | 9 cut(s) | 414, 822, 1342, 1900, 1959, 2187, 2371, 2799, 3362 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 785, 2425, 2710, 2866, 3051, 3495 |
| AgeI | ACCGGT | 1 cut(s) | 2123 |
| AjnI | CCWGG | 3 cut(s) | 1394, 2454, 3642 |
| AloI | GAACNNNNNNTCC | 3 cut(s) | 34, 3358, 3390 |
| Alw21I | GWGCWC | 2 cut(s) | 20, 3338 |
| Alw26I | GTCTC | 5 cut(s) | 88, 545, 743, 2606, 2682 |
| AlwI | GGATC | 6 cut(s) | 594, 2453, 2466, 2901, 2989, 3487 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 947 |
| Ama87I | CYCGRG | 1 cut(s) | 13 |
| AoxI | GGCC | 5 cut(s) | 72, 3141, 3270, 3351, 3600 |
| ApeKI | GCWGC | 4 cut(s) | 591, 678, 1448, 2883 |
| ApoI | RAATTY | 8 cut(s) | 159, 297, 330, 1516, 2617, 3091, 3580, 3653 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 2584, 2609, 2616, 2641 |
| AseI | ATTAAT | 1 cut(s) | 1506 |
| AsiGI | ACCGGT | 1 cut(s) | 2123 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 697, 1702, 1716, 3027, 3283, 3657 |
| Asp718I | GGTACC | 1 cut(s) | 412 |
| AspLEI | GCGC | 5 cut(s) | 683, 1089, 1215, 1577, 3120 |
| AspS9I | GGNCC | 4 cut(s) | 178, 1556, 3141, 3352 |
| AsuNHI | GCTAGC | 1 cut(s) | 2951 |
| AvaI | CYCGRG | 1 cut(s) | 13 |
| AvaII | GGWCC | 2 cut(s) | 178, 1556 |
| AxyI | CCTNAGG | 1 cut(s) | 3018 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 861, 894 |
| BalI | TGGCCA | 2 cut(s) | 74, 3272 |
| BamHI | GGATCC | 1 cut(s) | 2458 |
| BanI | GGYRCC | 3 cut(s) | 412, 2755, 3407 |
| BanII | GRGCYC | 2 cut(s) | 20, 3338 |
| BauI | CACGAG | 1 cut(s) | 52 |
| BbsI | GAAGAC | 4 cut(s) | 837, 1886, 2114, 3642 |
| Bbv12I | GWGCWC | 2 cut(s) | 20, 3338 |
| BbvCI | CCTCAGC | 1 cut(s) | 3012 |
| BbvI | GCAGC | 4 cut(s) | 603, 690, 1460, 2870 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1583, 1617 |
| BciT130I | CCWGG | 3 cut(s) | 1396, 2456, 3644 |
| BciVI | GTATCC | 4 cut(s) | 1012, 1825, 2035, 2263 |
| BclI | TGATCA | 2 cut(s) | 1248, 2542 |
| BcoDI | GTCTC | 5 cut(s) | 88, 545, 743, 2606, 2682 |
| BfmI | CTRYAG | 3 cut(s) | 894, 1323, 1497 |
| BfuAI | ACCTGC | 1 cut(s) | 3239 |
| BfuI | GTATCC | 4 cut(s) | 1012, 1825, 2035, 2263 |
| BglII | AGATCT | 2 cut(s) | 1481, 2413 |
| BisI | GCNGC | 5 cut(s) | 592, 679, 1449, 2884, 3612 |
| BlpI | GCTNAGC | 2 cut(s) | 732, 3337 |
| BlsI | GCNGC | 5 cut(s) | 593, 680, 1450, 2885, 3613 |
| BmcAI | AGTACT | 1 cut(s) | 1342 |
| Bme1390I | CCNGG | 3 cut(s) | 1396, 2456, 3644 |
| Bme18I | GGWCC | 2 cut(s) | 178, 1556 |
| BmeT110I | CYCGRG | 1 cut(s) | 13 |
| BmgT120I | GGNCC | 4 cut(s) | 178, 1556, 3141, 3352 |
| BmrFI | CCNGG | 3 cut(s) | 1396, 2456, 3644 |
| BmrI | ACTGGG | 1 cut(s) | 3060 |
| BmsI | GCATC | 9 cut(s) | 142, 259, 692, 1042, 1168, 2389, 3064, 3086, 3623 |
| BmtI | GCTAGC | 1 cut(s) | 2955 |
| BmuI | ACTGGG | 1 cut(s) | 3060 |
| BpiI | GAAGAC | 4 cut(s) | 837, 1886, 2114, 3642 |
| BpmI | CTGGAG | 4 cut(s) | 762, 810, 2337, 2402 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3012 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 732, 3337 |
| BpuEI | CTTGAG | 2 cut(s) | 634, 2894 |
| BsaBI | GATNNNNATC | 2 cut(s) | 506, 2986 |
| BsaHI | GRCGYC | 2 cut(s) | 33, 240 |
| BsaJI | CCNNGG | 6 cut(s) | 24, 1395, 1884, 2112, 2926, 3102 |
| BsaWI | WCCGGW | 3 cut(s) | 180, 1651, 2123 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 32, 1518, 1548 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 785, 2425, 2710, 2866, 3051, 3495 |
| Bse118I | RCCGGY | 2 cut(s) | 2123, 3544 |
| Bse1I | ACTGG | 5 cut(s) | 779, 3055, 3230, 3273, 3633 |
| Bse21I | CCTNAGG | 1 cut(s) | 3018 |
| Bse3DI | GCAATG | 6 cut(s) | 416, 529, 1767, 2323, 2664, 3478 |
| Bse8I | GATNNNNATC | 2 cut(s) | 506, 2986 |
| BseBI | CCWGG | 3 cut(s) | 1396, 2456, 3644 |
| BseDI | CCNNGG | 6 cut(s) | 24, 1395, 1884, 2112, 2926, 3102 |
| BseGI | GGATG | 4 cut(s) | 34, 133, 1660, 2679 |
| BseJI | GATNNNNATC | 2 cut(s) | 506, 2986 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 785, 2425, 2710, 2866, 3051, 3495 |
| BseMI | GCAATG | 6 cut(s) | 416, 529, 1767, 2323, 2664, 3478 |
| BseNI | ACTGG | 5 cut(s) | 779, 3055, 3230, 3273, 3633 |
| BseRI | GAGGAG | 3 cut(s) | 2009, 2237, 2723 |
| BseXI | GCAGC | 4 cut(s) | 603, 690, 1460, 2870 |
| BseYI | CCCAGC | 1 cut(s) | 2669 |
| BsgI | GTGCAG | 2 cut(s) | 1467, 2148 |
| Bsh1236I | CGCG | 1 cut(s) | 808 |
| BshFI | GGCC | 5 cut(s) | 74, 3143, 3272, 3353, 3602 |
| BshNI | GGYRCC | 3 cut(s) | 412, 2755, 3407 |
| BshTI | ACCGGT | 1 cut(s) | 2123 |
| BsiHKAI | GWGCWC | 2 cut(s) | 20, 3338 |
| BsiHKCI | CYCGRG | 1 cut(s) | 13 |
| BsiSI | CCGG | 5 cut(s) | 87, 181, 1652, 2124, 3545 |
| BslFI | GGGAC | 1 cut(s) | 3067 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 785, 2425, 2710, 2866, 3051, 3495 |
| BsmAI | GTCTC | 5 cut(s) | 88, 545, 743, 2606, 2682 |
| BsmBI | CGTCTC | 1 cut(s) | 88 |
| BsmFI | GGGAC | 1 cut(s) | 3067 |
| BsmI | GAATGC | 2 cut(s) | 514, 733 |
| BsnI | GGCC | 5 cut(s) | 74, 3143, 3272, 3353, 3602 |
| BsoBI | CYCGRG | 1 cut(s) | 13 |
| Bsp1286I | GDGCHC | 2 cut(s) | 20, 3338 |
| Bsp1407I | TGTACA | 2 cut(s) | 1957, 2185 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 732, 3337 |
| BspACI | CCGC | 9 cut(s) | 21, 584, 808, 2831, 2860, 2867, 2975, 3519, 3612 |
| BspANI | GGCC | 5 cut(s) | 74, 3143, 3272, 3353, 3602 |
| BspFNI | CGCG | 1 cut(s) | 808 |
| BspHI | TCATGA | 2 cut(s) | 1948, 2176 |
| BspMAI | CTGCAG | 2 cut(s) | 1327, 1501 |
| BspMI | ACCTGC | 1 cut(s) | 3239 |
| BspOI | GCTAGC | 1 cut(s) | 2955 |
| BspPI | GGATC | 6 cut(s) | 594, 2453, 2466, 2901, 2989, 3487 |
| BspQI | GCTCTTC | 1 cut(s) | 3326 |
| BspT107I | GGYRCC | 3 cut(s) | 412, 2755, 3407 |
| BsrDI | GCAATG | 6 cut(s) | 416, 529, 1767, 2323, 2664, 3478 |
| BsrFI | RCCGGY | 2 cut(s) | 2123, 3544 |
| BsrGI | TGTACA | 2 cut(s) | 1957, 2185 |
| BsrI | ACTGG | 5 cut(s) | 779, 3055, 3230, 3273, 3633 |
| BssAI | RCCGGY | 2 cut(s) | 2123, 3544 |
| BssECI | CCNNGG | 6 cut(s) | 24, 1395, 1884, 2112, 2926, 3102 |
| BssNI | GRCGYC | 2 cut(s) | 33, 240 |
| BssSI | CACGAG | 1 cut(s) | 52 |
| BssT1I | CCWWGG | 4 cut(s) | 1884, 2112, 2926, 3102 |
| Bst2BI | CACGAG | 1 cut(s) | 52 |
| Bst2UI | CCWGG | 3 cut(s) | 1396, 2456, 3644 |
| Bst6I | CTCTTC | 8 cut(s) | 281, 741, 1470, 1721, 2430, 2724, 2802, 3326 |
| BstACI | GRCGYC | 2 cut(s) | 33, 240 |
| BstAUI | TGTACA | 2 cut(s) | 1957, 2185 |
| BstC8I | GCNNGC | 8 cut(s) | 2500, 2523, 2579, 2611, 2840, 2953, 3412, 3675 |
| BstF5I | GGATG | 4 cut(s) | 34, 133, 1660, 2679 |
| BstFNI | CGCG | 1 cut(s) | 808 |
| BstHHI | GCGC | 5 cut(s) | 683, 1089, 1215, 1577, 3120 |
| BstMAI | GTCTC | 5 cut(s) | 88, 545, 743, 2606, 2682 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 2961, 3324, 3333, 3608 |
| BstNI | CCWGG | 3 cut(s) | 1396, 2456, 3644 |
| BstNSI | RCATGY | 1 cut(s) | 2804 |
| BstSCI | CCNGG | 3 cut(s) | 1394, 2454, 3642 |
| BstSFI | CTRYAG | 3 cut(s) | 894, 1323, 1497 |
| BstUI | CGCG | 1 cut(s) | 808 |
| BstV1I | GCAGC | 4 cut(s) | 603, 690, 1460, 2870 |
| BstV2I | GAAGAC | 4 cut(s) | 837, 1886, 2114, 3642 |
| BstX2I | RGATCY | 5 cut(s) | 1481, 2413, 2458, 2893, 3479 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 320, 1442, 2933 |
| BstYI | RGATCY | 5 cut(s) | 1481, 2413, 2458, 2893, 3479 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3018 |
| BsuI | GTATCC | 4 cut(s) | 1012, 1825, 2035, 2263 |
| BsuRI | GGCC | 5 cut(s) | 74, 3143, 3272, 3353, 3602 |
| BtsCI | GGATG | 4 cut(s) | 34, 133, 1660, 2679 |
| BtsI | GCAGTG | 1 cut(s) | 1030 |
| BveI | ACCTGC | 1 cut(s) | 3239 |
| Cac8I | GCNNGC | 8 cut(s) | 2500, 2523, 2579, 2611, 2840, 2953, 3412, 3675 |
| CaiI | CAGNNNCTG | 1 cut(s) | 947 |
| CciI | TCATGA | 2 cut(s) | 1948, 2176 |
| CfoI | GCGC | 5 cut(s) | 683, 1089, 1215, 1577, 3120 |
| Cfr10I | RCCGGY | 2 cut(s) | 2123, 3544 |
| Cfr13I | GGNCC | 4 cut(s) | 178, 1556, 3141, 3352 |
| CseI | GACGC | 2 cut(s) | 229, 3577 |
| Csp6I | GTAC | 9 cut(s) | 413, 821, 1341, 1899, 1958, 2186, 2370, 2798, 3361 |
| CspAI | ACCGGT | 1 cut(s) | 2123 |
| CviQI | GTAC | 9 cut(s) | 413, 821, 1341, 1899, 1958, 2186, 2370, 2798, 3361 |
| DraI | TTTAAA | 1 cut(s) | 489 |
| EaeI | YGGCCR | 2 cut(s) | 72, 3270 |
| Eam1104I | CTCTTC | 8 cut(s) | 281, 741, 1470, 1721, 2430, 2724, 2802, 3326 |
| EarI | CTCTTC | 8 cut(s) | 281, 741, 1470, 1721, 2430, 2724, 2802, 3326 |
| EciI | GGCGGA | 2 cut(s) | 10, 599 |
| Ecl136II | GAGCTC | 2 cut(s) | 18, 3336 |
| Eco130I | CCWWGG | 4 cut(s) | 1884, 2112, 2926, 3102 |
| Eco24I | GRGCYC | 2 cut(s) | 20, 3338 |
| Eco47I | GGWCC | 2 cut(s) | 178, 1556 |
| Eco53kI | GAGCTC | 2 cut(s) | 18, 3336 |
| Eco57I | CTGAAG | 6 cut(s) | 900, 1005, 1662, 2826, 2967, 3399 |
| Eco81I | CCTNAGG | 1 cut(s) | 3018 |
| Eco88I | CYCGRG | 1 cut(s) | 13 |
| EcoICRI | GAGCTC | 2 cut(s) | 18, 3336 |
| EcoRII | CCWGG | 3 cut(s) | 1394, 2454, 3642 |
| EcoT14I | CCWWGG | 4 cut(s) | 1884, 2112, 2926, 3102 |
| EcoT22I | ATGCAT | 1 cut(s) | 3079 |
| EcoT38I | GRGCYC | 2 cut(s) | 20, 3338 |
| ErhI | CCWWGG | 4 cut(s) | 1884, 2112, 2926, 3102 |
| Esp3I | CGTCTC | 1 cut(s) | 88 |
| FaqI | GGGAC | 1 cut(s) | 3067 |
| FbaI | TGATCA | 2 cut(s) | 1248, 2542 |
| FblI | GTMKAC | 4 cut(s) | 243, 450, 2633, 3591 |
| Fnu4HI | GCNGC | 5 cut(s) | 592, 679, 1449, 2884, 3612 |
| FokI | GGATG | 4 cut(s) | 41, 120, 1647, 2686 |
| FriOI | GRGCYC | 2 cut(s) | 20, 3338 |
| Fsp4HI | GCNGC | 5 cut(s) | 592, 679, 1449, 2884, 3612 |
| GlaI | GCGC | 5 cut(s) | 682, 1088, 1214, 1576, 3119 |
| GluI | GCNGC | 5 cut(s) | 592, 679, 1449, 2884, 3612 |
| GsaI | CCCAGC | 1 cut(s) | 2673 |
| GsuI | CTGGAG | 4 cut(s) | 762, 810, 2337, 2402 |
| HaeIII | GGCC | 5 cut(s) | 74, 3143, 3272, 3353, 3602 |
| HapII | CCGG | 5 cut(s) | 87, 181, 1652, 2124, 3545 |
| HgaI | GACGC | 2 cut(s) | 229, 3577 |
| HhaI | GCGC | 5 cut(s) | 683, 1089, 1215, 1577, 3120 |
| Hin1I | GRCGYC | 2 cut(s) | 33, 240 |
| Hin6I | GCGC | 5 cut(s) | 681, 1087, 1213, 1575, 3118 |
| HinP1I | GCGC | 5 cut(s) | 681, 1087, 1213, 1575, 3118 |
| HincII | GTYRAC | 3 cut(s) | 244, 1383, 1967 |
| HindII | GTYRAC | 3 cut(s) | 244, 1383, 1967 |
| HindIII | AAGCTT | 2 cut(s) | 696, 3282 |
| HpaII | CCGG | 5 cut(s) | 87, 181, 1652, 2124, 3545 |
| Hpy99I | CGWCG | 1 cut(s) | 245 |
| HpyCH4IV | ACGT | 1 cut(s) | 33 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 2961, 3324, 3333, 3608 |
| HpySE526I | ACGT | 1 cut(s) | 33 |
| Hsp92I | GRCGYC | 2 cut(s) | 33, 240 |
| HspAI | GCGC | 5 cut(s) | 681, 1087, 1213, 1575, 3118 |
| KpnI | GGTACC | 1 cut(s) | 416 |
| Ksp22I | TGATCA | 2 cut(s) | 1248, 2542 |
| LguI | GCTCTTC | 1 cut(s) | 3326 |
| LmnI | GCTCC | 5 cut(s) | 23, 1456, 1687, 2969, 3652 |
| Lsp1109I | GCAGC | 4 cut(s) | 603, 690, 1460, 2870 |
| LweI | GCATC | 9 cut(s) | 142, 259, 692, 1042, 1168, 2389, 3064, 3086, 3623 |
| MaeII | ACGT | 1 cut(s) | 33 |
| MaeIII | GTNAC | 7 cut(s) | 34, 1228, 1813, 1846, 2074, 2450, 2812 |
| MflI | RGATCY | 5 cut(s) | 1481, 2413, 2458, 2893, 3479 |
| MhlI | GDGCHC | 2 cut(s) | 20, 3338 |
| MlsI | TGGCCA | 2 cut(s) | 74, 3272 |
| MluNI | TGGCCA | 2 cut(s) | 74, 3272 |
| MlyI | GAGTC | 4 cut(s) | 827, 1745, 2639, 3265 |
| MmeI | TCCRAC | 2 cut(s) | 129, 2406 |
| Mox20I | TGGCCA | 2 cut(s) | 74, 3272 |
| Mph1103I | ATGCAT | 1 cut(s) | 3079 |
| MroXI | GAANNNNTTC | 6 cut(s) | 697, 1702, 1716, 3027, 3283, 3657 |
| MscI | TGGCCA | 2 cut(s) | 74, 3272 |
| MseI | TTAA | 7 cut(s) | 222, 372, 488, 1506, 1629, 2736, 3234 |
| MslI | CAYNNNNRTG | 1 cut(s) | 519 |
| Msp20I | TGGCCA | 2 cut(s) | 74, 3272 |
| MspA1I | CMGCKG | 1 cut(s) | 1709 |
| MspI | CCGG | 5 cut(s) | 87, 181, 1652, 2124, 3545 |
| MspR9I | CCNGG | 3 cut(s) | 1396, 2456, 3644 |
| Mva1269I | GAATGC | 2 cut(s) | 514, 733 |
| MvaI | CCWGG | 3 cut(s) | 1396, 2456, 3644 |
| MvnI | CGCG | 1 cut(s) | 808 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 2961, 3324, 3333, 3608 |
| NheI | GCTAGC | 1 cut(s) | 2951 |
| NmuCI | GTSAC | 5 cut(s) | 34, 1813, 1846, 2074, 2450 |
| NsiI | ATGCAT | 1 cut(s) | 3079 |
| NspI | RCATGY | 1 cut(s) | 2804 |
| PagI | TCATGA | 2 cut(s) | 1948, 2176 |
| PaqCI | CACCTGC | 1 cut(s) | 3239 |
| PciSI | GCTCTTC | 1 cut(s) | 3326 |
| PctI | GAATGC | 2 cut(s) | 514, 733 |
| PdmI | GAANNNNTTC | 6 cut(s) | 697, 1702, 1716, 3027, 3283, 3657 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 785, 2425 |
| PinAI | ACCGGT | 1 cut(s) | 2123 |
| PkrI | GCNGC | 5 cut(s) | 593, 680, 1450, 2885, 3613 |
| PleI | GAGTC | 4 cut(s) | 827, 1745, 2638, 3264 |
| PpsI | GAGTC | 4 cut(s) | 827, 1745, 2638, 3264 |
| PshBI | ATTAAT | 1 cut(s) | 1506 |
| Psp124BI | GAGCTC | 2 cut(s) | 20, 3338 |
| Psp6I | CCWGG | 3 cut(s) | 1394, 2454, 3642 |
| PspFI | CCCAGC | 1 cut(s) | 2669 |
| PspGI | CCWGG | 3 cut(s) | 1394, 2454, 3642 |
| PspPI | GGNCC | 4 cut(s) | 178, 1556, 3141, 3352 |
| PstI | CTGCAG | 2 cut(s) | 1327, 1501 |
| PstNI | CAGNNNCTG | 1 cut(s) | 947 |
| PsuI | RGATCY | 5 cut(s) | 1481, 2413, 2458, 2893, 3479 |
| PvuII | CAGCTG | 1 cut(s) | 1709 |
| RsaI | GTAC | 9 cut(s) | 414, 822, 1342, 1900, 1959, 2187, 2371, 2799, 3362 |
| RsaNI | GTAC | 9 cut(s) | 413, 821, 1341, 1899, 1958, 2186, 2370, 2798, 3361 |
| RseI | CAYNNNNRTG | 1 cut(s) | 519 |
| SacI | GAGCTC | 2 cut(s) | 20, 3338 |
| SalI | GTCGAC | 1 cut(s) | 242 |
| SapI | GCTCTTC | 1 cut(s) | 3326 |
| SaqAI | TTAA | 7 cut(s) | 222, 372, 488, 1506, 1629, 2736, 3234 |
| SatI | GCNGC | 5 cut(s) | 592, 679, 1449, 2884, 3612 |
| Sau96I | GGNCC | 4 cut(s) | 178, 1556, 3141, 3352 |
| ScaI | AGTACT | 1 cut(s) | 1342 |
| SchI | GAGTC | 4 cut(s) | 827, 1745, 2639, 3265 |
| ScrFI | CCNGG | 3 cut(s) | 1396, 2456, 3644 |
| SduI | GDGCHC | 2 cut(s) | 20, 3338 |
| SfaNI | GCATC | 9 cut(s) | 142, 259, 692, 1042, 1168, 2389, 3064, 3086, 3623 |
| SfcI | CTRYAG | 3 cut(s) | 894, 1323, 1497 |
| SgrAI | CRCCGGYG | 1 cut(s) | 2123 |
| SinI | GGWCC | 2 cut(s) | 178, 1556 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 519 |
| SmlI | CTYRAG | 2 cut(s) | 649, 2909 |
| SmoI | CTYRAG | 2 cut(s) | 649, 2909 |
| SsiI | CCGC | 9 cut(s) | 21, 584, 808, 2831, 2860, 2867, 2975, 3519, 3612 |
| SspI | AATATT | 1 cut(s) | 445 |
| SstI | GAGCTC | 2 cut(s) | 20, 3338 |
| StyD4I | CCNGG | 3 cut(s) | 1394, 2454, 3642 |
| StyI | CCWWGG | 4 cut(s) | 1884, 2112, 2926, 3102 |
| TaiI | ACGT | 1 cut(s) | 36 |
| TaqI | TCGA | 3 cut(s) | 163, 243, 1421 |
| TatI | WGTACW | 5 cut(s) | 1340, 1957, 2185, 2797, 3360 |
| TauI | GCSGC | 1 cut(s) | 3614 |
| Tru1I | TTAA | 7 cut(s) | 222, 372, 488, 1506, 1629, 2736, 3234 |
| Tru9I | TTAA | 7 cut(s) | 222, 372, 488, 1506, 1629, 2736, 3234 |
| TseFI | GTSAC | 5 cut(s) | 34, 1813, 1846, 2074, 2450 |
| TseI | GCWGC | 4 cut(s) | 591, 678, 1448, 2883 |
| Tsp45I | GTSAC | 5 cut(s) | 34, 1813, 1846, 2074, 2450 |
| TspGWI | ACGGA | 2 cut(s) | 126, 3212 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 785, 2425 |
| VpaK11BI | GGWCC | 2 cut(s) | 178, 1556 |
| VspI | ATTAAT | 1 cut(s) | 1506 |
| XapI | RAATTY | 8 cut(s) | 159, 297, 330, 1516, 2617, 3091, 3580, 3653 |
| XceI | RCATGY | 1 cut(s) | 2804 |
| XmiI | GTMKAC | 4 cut(s) | 243, 450, 2633, 3591 |
| XmnI | GAANNNNTTC | 6 cut(s) | 697, 1702, 1716, 3027, 3283, 3657 |
| ZraI | GACGTC | 1 cut(s) | 34 |
| ZrmI | AGTACT | 1 cut(s) | 1342 |
| Zsp2I | ATGCAT | 1 cut(s) | 3079 |