Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7983378.1

Orthogroup ID

OG0009497

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 515

Gene Structure 515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7983378.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 515 bp

tgcctggacatcttcaagaacaagctctccctgaacgacttcgccctggtgttcaaggagttcgcggcgcgtggcgactggcagaggtcgctgcggctgttcaagtatatgcagcggcagatatggtgcaagccgagcgagcacatctacaccatcatgatcagtctgctcggccgcgaaggtttacttgacaaatgcgctgagattttcgacgaaatgcctagccaaggtgtgattaggactgtgtttagctacactgctttgattaatgcctatggccggaatggtcagtatgaaatgtctcttcaattacttgatagaatgaagaaagatagggtttcgccgaatatattgacttataatactgtgcttaatgcttgtgctagaggggggttggattgggaggggttgttaggattgtttgcggaaatgaggcacgagggggttcagccggaccttgttacttataatacattgcttagtgcttgcgccgggagaggtttaggtgatgaggc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

172

Amino Acids

19.58

Weight (kDa)

6.91

Isoelectric Point (pI)

37.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74850
fragaria_vesca	FvH4_5g16180 FvH4_5g16180
malus_domestica	MD06G1183200.v1.1 MD14G1189200.v1.1
prunus_persica	Prupe.5G181900_v2.0.a1 Prupe.5G181900_v2.0.a1
pyrus_communis	pycom06g16220 pycom14g15690
rosa_chinensis	RchiOBHm_Chr7g0179951
rosa_laevigata	RLG00000005307
rosa_multiflora	Rmu_co7983378.1_g000001 Rmu_sc0024809.1_g000001 Rmu_sc0024810.1_g000001 Rmu_sc0031626.1_g000001
rosa_roxburghii	Rroxscaffold_3G00273280
rosa_rugosa	Rorug06G0429400
rosa_samantha	Rh7AG029900 Rh7BG029100 Rh7CG030800 Rh7DG030100
rosa_wichuraiana	Rw7G002390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	360, 468
AccII	CGCG	3 cut(s)	65, 70, 177
AciI	CCGC	5 cut(s)	65, 94, 115, 175, 425
AcoI	YGGCCR	2 cut(s)	172, 277
AfiI	CCNNNNNNNGG	2 cut(s)	227, 279
AgsI	TTSAA	4 cut(s)	16, 55, 103, 308
AjnI	CCWGG	2 cut(s)	3, 45
AloI	GAACNNNNNNTCC	2 cut(s)	11, 43
AluBI	AGCT	2 cut(s)	25, 252
AluI	AGCT	2 cut(s)	25, 252
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	1 cut(s)	306
AoxI	GGCC	2 cut(s)	172, 277
ApeKI	GCWGC	2 cut(s)	91, 112
AseI	ATTAAT	1 cut(s)	267
Asp700I	GAANNNNTTC	1 cut(s)	38
AspLEI	GCGC	3 cut(s)	70, 200, 491
AspS9I	GGNCC	1 cut(s)	454
AsuC2I	CCSGG	1 cut(s)	493
AvaII	GGWCC	1 cut(s)	454
BauI	CACGAG	1 cut(s)	437
Bbv12I	GWGCWC	1 cut(s)	144
BbvI	GCAGC	2 cut(s)	78, 124
BccI	CCATC	1 cut(s)	161
BciT130I	CCWGG	2 cut(s)	5, 47
BclI	TGATCA	1 cut(s)	159
BcnI	CCSGG	1 cut(s)	493
BcoDI	GTCTC	1 cut(s)	306
BfaI	CTAG	2 cut(s)	222, 384
BisI	GCNGC	6 cut(s)	66, 92, 95, 113, 116, 175
BlsI	GCNGC	6 cut(s)	67, 93, 96, 114, 117, 176
Bme1390I	CCNGG	3 cut(s)	5, 47, 493
Bme18I	GGWCC	1 cut(s)	454
BmgT120I	GGNCC	1 cut(s)	454
BmrFI	CCNGG	3 cut(s)	5, 47, 493
BpuMI	CCSGG	1 cut(s)	493
BsaJI	CCNNGG	2 cut(s)	45, 226
BsaXI	ACNNNNNCTCC	4 cut(s)	11, 41, 395, 425
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 279
Bse1I	ACTGG	1 cut(s)	83
Bse3DI	GCAATG	1 cut(s)	473
BseBI	CCWGG	2 cut(s)	5, 47
BseDI	CCNNGG	2 cut(s)	45, 226
BseLI	CCNNNNNNNGG	2 cut(s)	227, 279
BseMI	GCAATG	1 cut(s)	473
BseMII	CTCAG	1 cut(s)	192
BseNI	ACTGG	1 cut(s)	83
BseX3I	CGGCCG	1 cut(s)	172
BseXI	GCAGC	2 cut(s)	78, 124
Bsh1236I	CGCG	3 cut(s)	65, 70, 177
Bsh1285I	CGRYCG	1 cut(s)	175
BshFI	GGCC	2 cut(s)	174, 279
BsiEI	CGRYCG	1 cut(s)	175
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	3 cut(s)	280, 452, 492
BslI	CCNNNNNNNGG	2 cut(s)	227, 279
BsmAI	GTCTC	1 cut(s)	306
BsnI	GGCC	2 cut(s)	174, 279
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	1 cut(s)	159
BspACI	CCGC	5 cut(s)	65, 94, 115, 175, 425
BspANI	GGCC	2 cut(s)	174, 279
BspCNI	CTCAG	1 cut(s)	193
BspFNI	CGCG	3 cut(s)	65, 70, 177
BspHI	TCATGA	1 cut(s)	156
BsrDI	GCAATG	1 cut(s)	473
BsrI	ACTGG	1 cut(s)	83
BssECI	CCNNGG	2 cut(s)	45, 226
BssMI	GATC	1 cut(s)	159
BssSI	CACGAG	1 cut(s)	437
BssT1I	CCWWGG	1 cut(s)	226
Bst2BI	CACGAG	1 cut(s)	437
Bst2UI	CCWGG	2 cut(s)	5, 47
Bst4CI	ACNGT	2 cut(s)	244, 367
Bst6I	CTCTTC	1 cut(s)	309
BstC8I	GCNNGC	3 cut(s)	131, 140, 487
BstDEI	CTNAG	2 cut(s)	201, 479
BstENI	CCTNNNNNAGG	1 cut(s)	225
BstFNI	CGCG	3 cut(s)	65, 70, 177
BstHHI	GCGC	3 cut(s)	70, 200, 491
BstKTI	GATC	1 cut(s)	162
BstMAI	GTCTC	1 cut(s)	306
BstMBI	GATC	1 cut(s)	159
BstMCI	CGRYCG	1 cut(s)	175
BstMWI	GCNNNNNNNGC	3 cut(s)	88, 135, 139
BstNI	CCWGG	2 cut(s)	5, 47
BstSCI	CCNGG	3 cut(s)	3, 45, 491
BstUI	CGCG	3 cut(s)	65, 70, 177
BstV1I	GCAGC	2 cut(s)	78, 124
BstZI	CGGCCG	1 cut(s)	172
BsuRI	GGCC	2 cut(s)	174, 279
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	1 cut(s)	255
Cac8I	GCNNGC	3 cut(s)	131, 140, 487
CciI	TCATGA	1 cut(s)	156
CfoI	GCGC	3 cut(s)	70, 200, 491
Cfr13I	GGNCC	1 cut(s)	454
CviAII	CATG	1 cut(s)	157
CviJI	RGCY	8 cut(s)	25, 97, 133, 174, 225, 252, 279, 451
CviKI_1	RGCY	8 cut(s)	25, 97, 133, 174, 225, 252, 279, 451
DdeI	CTNAG	2 cut(s)	201, 479
DpnI	GATC	1 cut(s)	161
DpnII	GATC	1 cut(s)	159
EaeI	YGGCCR	2 cut(s)	172, 277
EagI	CGGCCG	1 cut(s)	172
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
EclXI	CGGCCG	1 cut(s)	172
Eco130I	CCWWGG	1 cut(s)	226
Eco47I	GGWCC	1 cut(s)	454
Eco52I	CGGCCG	1 cut(s)	172
EcoNI	CCTNNNNNAGG	1 cut(s)	225
EcoRII	CCWGG	2 cut(s)	3, 45
EcoT14I	CCWWGG	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	226
FaeI	CATG	1 cut(s)	160
FaiI	YATR	9 cut(s)	108, 110, 124, 158, 276, 294, 350, 360, 468
FalI	AAGNNNNNCTT	2 cut(s)	171, 203
FatI	CATG	1 cut(s)	156
FbaI	TGATCA	1 cut(s)	159
Fnu4HI	GCNGC	6 cut(s)	66, 92, 95, 113, 116, 175
Fsp4HI	GCNGC	6 cut(s)	66, 92, 95, 113, 116, 175
FspBI	CTAG	2 cut(s)	222, 384
GlaI	GCGC	3 cut(s)	69, 199, 490
GluI	GCNGC	6 cut(s)	66, 92, 95, 113, 116, 175
HaeIII	GGCC	2 cut(s)	174, 279
HapII	CCGG	3 cut(s)	280, 452, 492
HhaI	GCGC	3 cut(s)	70, 200, 491
Hin1II	CATG	1 cut(s)	160
Hin6I	GCGC	3 cut(s)	68, 198, 489
HinP1I	GCGC	3 cut(s)	68, 198, 489
HpaII	CCGG	3 cut(s)	280, 452, 492
Hpy166II	GTNNAC	1 cut(s)	185
Hpy188III	TCNNGA	2 cut(s)	16, 157
Hpy8I	GTNNAC	1 cut(s)	185
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	1 cut(s)	173
HpyCH4III	ACNGT	2 cut(s)	244, 367
HpyCH4V	TGCA	2 cut(s)	112, 129
HpyF10VI	GCNNNNNNNGC	3 cut(s)	88, 135, 139
HpyF3I	CTNAG	2 cut(s)	201, 479
Hsp92II	CATG	1 cut(s)	160
HspAI	GCGC	3 cut(s)	68, 198, 489
Ksp22I	TGATCA	1 cut(s)	159
Kzo9I	GATC	1 cut(s)	159
LpnPI	CCDG	8 cut(s)	17, 32, 44, 59, 64, 293, 465, 505
Lsp1109I	GCAGC	2 cut(s)	78, 124
MaeI	CTAG	2 cut(s)	222, 384
MaeIII	GTNAC	1 cut(s)	460
MalI	GATC	1 cut(s)	161
MboI	GATC	1 cut(s)	159
MboII	GAAGA	3 cut(s)	4, 296, 337
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	1 cut(s)	308
MmeI	TCCRAC	1 cut(s)	375
MnlI	CCTC	7 cut(s)	78, 380, 397, 426, 433, 491, 505
MroXI	GAANNNNTTC	1 cut(s)	38
MseI	TTAA	2 cut(s)	267, 372
MslI	CAYNNNNRTG	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	115
MspI	CCGG	3 cut(s)	280, 452, 492
MspR9I	CCNGG	3 cut(s)	5, 47, 493
MvaI	CCWGG	2 cut(s)	5, 47
MvnI	CGCG	3 cut(s)	65, 70, 177
MwoI	GCNNNNNNNGC	3 cut(s)	88, 135, 139
NciI	CCSGG	1 cut(s)	493
NdeII	GATC	1 cut(s)	159
NlaIII	CATG	1 cut(s)	160
NmeAIII	GCCGAG	2 cut(s)	150, 159
PagI	TCATGA	1 cut(s)	156
PdmI	GAANNNNTTC	1 cut(s)	38
PkrI	GCNGC	6 cut(s)	67, 93, 96, 114, 117, 176
PshBI	ATTAAT	1 cut(s)	267
PsiI	TTATAA	2 cut(s)	360, 468
Psp6I	CCWGG	2 cut(s)	3, 45
PspGI	CCWGG	2 cut(s)	3, 45
PspPI	GGNCC	1 cut(s)	454
RseI	CAYNNNNRTG	1 cut(s)	155
SaqAI	TTAA	2 cut(s)	267, 372
SatI	GCNGC	6 cut(s)	66, 92, 95, 113, 116, 175
Sau3AI	GATC	1 cut(s)	159
Sau96I	GGNCC	1 cut(s)	454
ScrFI	CCNGG	3 cut(s)	5, 47, 493
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	8 cut(s)	27, 89, 184, 232, 254, 459, 502, 508
SinI	GGWCC	1 cut(s)	454
SmiMI	CAYNNNNRTG	1 cut(s)	155
Sse9I	AATT	1 cut(s)	308
SsiI	CCGC	5 cut(s)	65, 94, 115, 175, 425
SspMI	CTAG	2 cut(s)	222, 384
StyD4I	CCNGG	3 cut(s)	3, 45, 491
StyI	CCWWGG	1 cut(s)	226
TaaI	ACNGT	2 cut(s)	244, 367
TaqI	TCGA	1 cut(s)	210
TasI	AATT	1 cut(s)	308
TauI	GCSGC	4 cut(s)	68, 97, 118, 177
Tru1I	TTAA	2 cut(s)	267, 372
Tru9I	TTAA	2 cut(s)	267, 372
TscAI	CASTG	1 cut(s)	262
TseI	GCWGC	2 cut(s)	91, 112
TspDTI	ATGAA	2 cut(s)	309, 338
TspRI	CASTG	1 cut(s)	262
VpaK11BI	GGWCC	1 cut(s)	454
VspI	ATTAAT	1 cut(s)	267
XagI	CCTNNNNNAGG	1 cut(s)	225
XmnI	GAANNNNTTC	1 cut(s)	38
XspI	CTAG	2 cut(s)	222, 384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.