Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024809.1

Orthogroup ID

OG0009497

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 960

Gene Structure 960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024809.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 953 bp

atgaccctctccatttccatcccctcccctctctccgccccaatcctcaagctaaaccctaaaccccaccacctctcctccttccgattcctctccggccaccgcaggttcctccacggccagcggttatcggtctccgtcagggcgaagccgaaggacctcatcctcgggaacccctccgtcaccgtcgagaagggcaagtacagctacgacgtcgaaaccctaatcaacaagctcagcagcctcccgccacgtggcagcatcgcgcggtgcctggacatcttcaagaacaagctctccctgaacgacttcgccctggtgttcaaggagttcgcggcgcgtggcgactggcagaggtcgctgcggctgttcaagtatatgcagcggcagatatggtgcaagccgagcgagcacatctacaccatcatgatcagtctgctcggccgcgaaggtttacttgacaaatgcgctgagattttcgacgaaatgcctagccaaggtgtgattaggactgtgtttagctacactgctttgattaatgcctatggccggaatggtcagtatgaaatgtctcttcaattacttgatagaatgaagaaagatagggtttcgccgaatatattgacttataatactgtgcttaatgcttgtgctagaggggggttggattgggaggggttgttaggattgtttgcggaaatgaggcacgagggggttcagccggaccttgttacttataatacattgcttagtgcttgcgccgggagaggtttaggtgatgaggcggagatggtgtttaggactatgaatgagggtgggatagttccggatataaccacgtatagttatcttgttgagacttttggtaaattggataatcttgagaaggtttccgagttgcttaaagggatggagtctggggggaatttgcctgatattacgtcgtataatgt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

318

Amino Acids

35.72

Weight (kDa)

8.84

Isoelectric Point (pI)

32.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74850
fragaria_vesca	FvH4_5g16180 FvH4_5g16180
malus_domestica	MD06G1183200.v1.1 MD14G1189200.v1.1
prunus_persica	Prupe.5G181900_v2.0.a1 Prupe.5G181900_v2.0.a1
pyrus_communis	pycom06g16220 pycom14g15690
rosa_chinensis	RchiOBHm_Chr7g0179951
rosa_laevigata	RLG00000005307
rosa_multiflora	Rmu_co7983378.1_g000001 Rmu_sc0024809.1_g000001 Rmu_sc0024810.1_g000001 Rmu_sc0031626.1_g000001
rosa_roxburghii	Rroxscaffold_3G00273280
rosa_rugosa	Rorug06G0429400
rosa_samantha	Rh7AG029900 Rh7BG029100 Rh7CG030800 Rh7DG030100
rosa_wichuraiana	Rw7G002390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	630, 738
AatII	GACGTC	1 cut(s)	216
Acc36I	ACCTGC	1 cut(s)	96
AccB1I	GGYRCC	1 cut(s)	270
AccII	CGCG	5 cut(s)	266, 268, 335, 340, 447
AccIII	TCCGGA	1 cut(s)	826
AcoI	YGGCCR	4 cut(s)	97, 118, 442, 547
AcsI	RAATTY	1 cut(s)	925
AcvI	CACGTG	1 cut(s)	254
AcyI	GRCGYC	1 cut(s)	213
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	3 cut(s)	254, 497, 549
AgsI	TTSAA	4 cut(s)	286, 325, 373, 578
AjnI	CCWGG	2 cut(s)	273, 315
AloI	GAACNNNNNNTCC	2 cut(s)	281, 313
AluBI	AGCT	5 cut(s)	52, 207, 235, 295, 522
AluI	AGCT	5 cut(s)	52, 207, 235, 295, 522
Alw21I	GWGCWC	1 cut(s)	414
Alw26I	GTCTC	3 cut(s)	139, 576, 851
Ama87I	CYCGRG	1 cut(s)	167
Aor13HI	TCCGGA	1 cut(s)	826
AoxI	GGCC	4 cut(s)	97, 118, 442, 547
ApeKI	GCWGC	4 cut(s)	240, 258, 361, 382
ApoI	RAATTY	1 cut(s)	925
AseI	ATTAAT	1 cut(s)	537
Asp700I	GAANNNNTTC	1 cut(s)	308
AspLEI	GCGC	4 cut(s)	268, 340, 470, 761
AspS9I	GGNCC	2 cut(s)	157, 724
AsuC2I	CCSGG	1 cut(s)	763
AsuHPI	GGTGA	2 cut(s)	175, 788
AvaI	CYCGRG	1 cut(s)	167
AvaII	GGWCC	2 cut(s)	157, 724
BanI	GGYRCC	1 cut(s)	270
BarI	GAAGNNNNNNTAC	2 cut(s)	185, 217
BauI	CACGAG	1 cut(s)	707
BbrPI	CACGTG	1 cut(s)	254
Bbv12I	GWGCWC	1 cut(s)	414
BbvI	GCAGC	4 cut(s)	252, 270, 348, 394
BccI	CCATC	4 cut(s)	26, 431, 784, 904
BceAI	ACGGC	1 cut(s)	133
BciT130I	CCWGG	2 cut(s)	275, 317
BclI	TGATCA	1 cut(s)	429
BcnI	CCSGG	1 cut(s)	763
BcoDI	GTCTC	3 cut(s)	139, 576, 851
BfaI	CTAG	2 cut(s)	492, 654
BfuAI	ACCTGC	1 cut(s)	96
BisI	GCNGC	8 cut(s)	241, 259, 336, 362, 365, 383, 386, 445
BlpI	GCTNAGC	1 cut(s)	236
BlsI	GCNGC	8 cut(s)	242, 260, 337, 363, 366, 384, 387, 446
Bme1390I	CCNGG	3 cut(s)	275, 317, 763
Bme18I	GGWCC	2 cut(s)	157, 724
BmeT110I	CYCGRG	1 cut(s)	167
BmgT120I	GGNCC	2 cut(s)	157, 724
BmiI	GGNNCC	3 cut(s)	110, 173, 272
BmrFI	CCNGG	3 cut(s)	275, 317, 763
BmsI	GCATC	1 cut(s)	270
Bpu1102I	GCTNAGC	1 cut(s)	236
BpuEI	CTTGAG	2 cut(s)	32, 902
BpuMI	CCSGG	1 cut(s)	763
BsaAI	YACGTR	2 cut(s)	254, 840
BsaHI	GRCGYC	1 cut(s)	213
BsaI	GGTCTC	1 cut(s)	139
BsaJI	CCNNGG	4 cut(s)	115, 166, 315, 496
BsaWI	WCCGGW	1 cut(s)	826
Bsc4I	CCNNNNNNNGG	3 cut(s)	254, 497, 549
Bse1I	ACTGG	1 cut(s)	353
Bse3DI	GCAATG	1 cut(s)	743
BseAI	TCCGGA	1 cut(s)	826
BseBI	CCWGG	2 cut(s)	275, 317
BseDI	CCNNGG	4 cut(s)	115, 166, 315, 496
BseGI	GGATG	3 cut(s)	18, 162, 915
BseLI	CCNNNNNNNGG	3 cut(s)	254, 497, 549
BseMI	GCAATG	1 cut(s)	743
BseMII	CTCAG	2 cut(s)	250, 462
BseNI	ACTGG	1 cut(s)	353
BseRI	GAGGAG	1 cut(s)	67
BseX3I	CGGCCG	1 cut(s)	442
BseXI	GCAGC	4 cut(s)	252, 270, 348, 394
Bsh1236I	CGCG	5 cut(s)	266, 268, 335, 340, 447
Bsh1285I	CGRYCG	1 cut(s)	445
BshFI	GGCC	4 cut(s)	99, 120, 444, 549
BshNI	GGYRCC	1 cut(s)	270
BsiEI	CGRYCG	1 cut(s)	445
BsiHKAI	GWGCWC	1 cut(s)	414
BsiHKCI	CYCGRG	1 cut(s)	167
BsiSI	CCGG	5 cut(s)	96, 550, 722, 762, 827
BslI	CCNNNNNNNGG	3 cut(s)	254, 497, 549
BsmAI	GTCTC	3 cut(s)	139, 576, 851
BsnI	GGCC	4 cut(s)	99, 120, 444, 549
Bso31I	GGTCTC	1 cut(s)	139
BsoBI	CYCGRG	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp13I	TCCGGA	1 cut(s)	826
Bsp143I	GATC	1 cut(s)	429
Bsp1720I	GCTNAGC	1 cut(s)	236
BspANI	GGCC	4 cut(s)	99, 120, 444, 549
BspCNI	CTCAG	2 cut(s)	249, 463
BspEI	TCCGGA	1 cut(s)	826
BspFNI	CGCG	5 cut(s)	266, 268, 335, 340, 447
BspHI	TCATGA	1 cut(s)	426
BspLI	GGNNCC	3 cut(s)	110, 173, 272
BspMI	ACCTGC	1 cut(s)	96
BspT107I	GGYRCC	1 cut(s)	270
BspTNI	GGTCTC	1 cut(s)	139
BsrDI	GCAATG	1 cut(s)	743
BsrI	ACTGG	1 cut(s)	353
BssECI	CCNNGG	4 cut(s)	115, 166, 315, 496
BssMI	GATC	1 cut(s)	429
BssNI	GRCGYC	1 cut(s)	213
BssSI	CACGAG	1 cut(s)	707
BssT1I	CCWWGG	1 cut(s)	496
Bst2BI	CACGAG	1 cut(s)	707
Bst2UI	CCWGG	2 cut(s)	275, 317
Bst4CI	ACNGT	3 cut(s)	187, 514, 637
Bst6I	CTCTTC	1 cut(s)	579
BstACI	GRCGYC	1 cut(s)	213
BstBAI	YACGTR	2 cut(s)	254, 840
BstC8I	GCNNGC	4 cut(s)	122, 401, 410, 757
BstDEI	CTNAG	3 cut(s)	236, 471, 749
BstDSI	CCRYGG	1 cut(s)	115
BstENI	CCTNNNNNAGG	1 cut(s)	495
BstF5I	GGATG	3 cut(s)	18, 162, 915
BstFNI	CGCG	5 cut(s)	266, 268, 335, 340, 447
BstHHI	GCGC	4 cut(s)	268, 340, 470, 761
BstKTI	GATC	1 cut(s)	432
BstMAI	GTCTC	3 cut(s)	139, 576, 851
BstMBI	GATC	1 cut(s)	429
BstMCI	CGRYCG	1 cut(s)	445
BstMWI	GCNNNNNNNGC	4 cut(s)	204, 358, 405, 409
BstNI	CCWGG	2 cut(s)	275, 317
BstSCI	CCNGG	3 cut(s)	273, 315, 761
BstUI	CGCG	5 cut(s)	266, 268, 335, 340, 447
BstV1I	GCAGC	4 cut(s)	252, 270, 348, 394
BstZI	CGGCCG	1 cut(s)	442
BsuRI	GGCC	4 cut(s)	99, 120, 444, 549
BtgI	CCRYGG	1 cut(s)	115
BtgZI	GCGATG	1 cut(s)	247
BtsCI	GGATG	3 cut(s)	18, 162, 915
BtsI	GCAGTG	1 cut(s)	525
BtsIMutI	CAGTG	1 cut(s)	525
BveI	ACCTGC	1 cut(s)	96
Cac8I	GCNNGC	4 cut(s)	122, 401, 410, 757
CciI	TCATGA	1 cut(s)	426
CfoI	GCGC	4 cut(s)	268, 340, 470, 761
Cfr13I	GGNCC	2 cut(s)	157, 724
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	1 cut(s)	427
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	3 cut(s)	236, 471, 749
DpnI	GATC	1 cut(s)	431
DpnII	GATC	1 cut(s)	429
EaeI	YGGCCR	4 cut(s)	97, 118, 442, 547
EagI	CGGCCG	1 cut(s)	442
Eam1104I	CTCTTC	1 cut(s)	579
EarI	CTCTTC	1 cut(s)	579
EciI	GGCGGA	2 cut(s)	25, 800
EclXI	CGGCCG	1 cut(s)	442
Eco130I	CCWWGG	1 cut(s)	496
Eco31I	GGTCTC	1 cut(s)	139
Eco47I	GGWCC	2 cut(s)	157, 724
Eco52I	CGGCCG	1 cut(s)	442
Eco72I	CACGTG	1 cut(s)	254
Eco88I	CYCGRG	1 cut(s)	167
EcoNI	CCTNNNNNAGG	1 cut(s)	495
EcoO109I	RGGNCCY	1 cut(s)	157
EcoRII	CCWGG	2 cut(s)	273, 315
EcoT14I	CCWWGG	1 cut(s)	496
ErhI	CCWWGG	1 cut(s)	496
FaeI	CATG	1 cut(s)	430
FalI	AAGNNNNNCTT	2 cut(s)	441, 473
FatI	CATG	1 cut(s)	426
FauI	CCCGC	1 cut(s)	255
FbaI	TGATCA	1 cut(s)	429
Fnu4HI	GCNGC	8 cut(s)	241, 259, 336, 362, 365, 383, 386, 445
FokI	GGATG	3 cut(s)	5, 149, 922
Fsp4HI	GCNGC	8 cut(s)	241, 259, 336, 362, 365, 383, 386, 445
FspBI	CTAG	2 cut(s)	492, 654
GlaI	GCGC	4 cut(s)	267, 339, 469, 760
GluI	GCNGC	8 cut(s)	241, 259, 336, 362, 365, 383, 386, 445
HaeIII	GGCC	4 cut(s)	99, 120, 444, 549
HapII	CCGG	5 cut(s)	96, 550, 722, 762, 827
HhaI	GCGC	4 cut(s)	268, 340, 470, 761
Hin1I	GRCGYC	1 cut(s)	213
Hin1II	CATG	1 cut(s)	430
Hin6I	GCGC	4 cut(s)	266, 338, 468, 759
HinP1I	GCGC	4 cut(s)	266, 338, 468, 759
HinfI	GANTC	2 cut(s)	87, 914
HpaII	CCGG	5 cut(s)	96, 550, 722, 762, 827
HphI	GGTGA	2 cut(s)	175, 788
Hpy166II	GTNNAC	1 cut(s)	455
Hpy188I	TCNGA	2 cut(s)	86, 895
Hpy188III	TCNNGA	6 cut(s)	169, 190, 286, 427, 827, 881
Hpy8I	GTNNAC	1 cut(s)	455
Hpy99I	CGWCG	5 cut(s)	191, 215, 218, 485, 946
HpyAV	CCTTC	5 cut(s)	91, 148, 187, 443, 880
HpyCH4III	ACNGT	3 cut(s)	187, 514, 637
HpyCH4IV	ACGT	4 cut(s)	213, 253, 839, 941
HpyCH4V	TGCA	2 cut(s)	382, 399
HpyF10VI	GCNNNNNNNGC	4 cut(s)	204, 358, 405, 409
HpyF3I	CTNAG	3 cut(s)	236, 471, 749
HpySE526I	ACGT	4 cut(s)	213, 253, 839, 941
Hsp92I	GRCGYC	1 cut(s)	213
Hsp92II	CATG	1 cut(s)	430
HspAI	GCGC	4 cut(s)	266, 338, 468, 759
Kpn2I	TCCGGA	1 cut(s)	826
Ksp22I	TGATCA	1 cut(s)	429
Kzo9I	GATC	1 cut(s)	429
Lsp1109I	GCAGC	4 cut(s)	252, 270, 348, 394
LweI	GCATC	1 cut(s)	270
MaeI	CTAG	2 cut(s)	492, 654
MaeII	ACGT	4 cut(s)	213, 253, 839, 941
MaeIII	GTNAC	2 cut(s)	181, 730
MalI	GATC	1 cut(s)	431
MboI	GATC	1 cut(s)	429
MboII	GAAGA	3 cut(s)	274, 566, 607
MhlI	GDGCHC	1 cut(s)	414
MluCI	AATT	3 cut(s)	578, 869, 925
MlyI	GAGTC	1 cut(s)	923
MmeI	TCCRAC	1 cut(s)	645
MroI	TCCGGA	1 cut(s)	826
MroXI	GAANNNNTTC	1 cut(s)	308
MseI	TTAA	3 cut(s)	537, 642, 903
MslI	CAYNNNNRTG	1 cut(s)	425
MspA1I	CMGCKG	2 cut(s)	124, 385
MspI	CCGG	5 cut(s)	96, 550, 722, 762, 827
MspR9I	CCNGG	3 cut(s)	275, 317, 763
MvaI	CCWGG	2 cut(s)	275, 317
MvnI	CGCG	5 cut(s)	266, 268, 335, 340, 447
MwoI	GCNNNNNNNGC	4 cut(s)	204, 358, 405, 409
NciI	CCSGG	1 cut(s)	763
NdeII	GATC	1 cut(s)	429
NlaIII	CATG	1 cut(s)	430
NlaIV	GGNNCC	3 cut(s)	110, 173, 272
NmeAIII	GCCGAG	2 cut(s)	420, 429
NmuCI	GTSAC	1 cut(s)	181
PagI	TCATGA	1 cut(s)	426
PdmI	GAANNNNTTC	1 cut(s)	308
PfeI	GAWTC	1 cut(s)	87
PkrI	GCNGC	8 cut(s)	242, 260, 337, 363, 366, 384, 387, 446
PleI	GAGTC	1 cut(s)	922
PmaCI	CACGTG	1 cut(s)	254
PmlI	CACGTG	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	922
Ppu21I	YACGTR	2 cut(s)	254, 840
PpuMI	RGGWCCY	1 cut(s)	157
PshBI	ATTAAT	1 cut(s)	537
PsiI	TTATAA	2 cut(s)	630, 738
Psp5II	RGGWCCY	1 cut(s)	157
Psp6I	CCWGG	2 cut(s)	273, 315
PspCI	CACGTG	1 cut(s)	254
PspGI	CCWGG	2 cut(s)	273, 315
PspN4I	GGNNCC	3 cut(s)	110, 173, 272
PspPI	GGNCC	2 cut(s)	157, 724
PspPPI	RGGWCCY	1 cut(s)	157
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	425
SaqAI	TTAA	3 cut(s)	537, 642, 903
SatI	GCNGC	8 cut(s)	241, 259, 336, 362, 365, 383, 386, 445
Sau3AI	GATC	1 cut(s)	429
Sau96I	GGNCC	2 cut(s)	157, 724
SchI	GAGTC	1 cut(s)	923
ScrFI	CCNGG	3 cut(s)	275, 317, 763
SduI	GDGCHC	1 cut(s)	414
SfaNI	GCATC	1 cut(s)	270
SinI	GGWCC	2 cut(s)	157, 724
SmiMI	CAYNNNNRTG	1 cut(s)	425
SmlI	CTYRAG	2 cut(s)	47, 881
SmoI	CTYRAG	2 cut(s)	47, 881
Sse9I	AATT	3 cut(s)	578, 869, 925
SspMI	CTAG	2 cut(s)	492, 654
StyD4I	CCNGG	3 cut(s)	273, 315, 761
StyI	CCWWGG	1 cut(s)	496
TaaI	ACNGT	3 cut(s)	187, 514, 637
TaiI	ACGT	4 cut(s)	216, 256, 842, 944
TaqI	TCGA	3 cut(s)	189, 216, 480
TaqII	GACCGA	1 cut(s)	121
TasI	AATT	3 cut(s)	578, 869, 925
TatI	WGTACW	1 cut(s)	201
TauI	GCSGC	4 cut(s)	338, 367, 388, 447
TfiI	GAWTC	1 cut(s)	87
Tru1I	TTAA	3 cut(s)	537, 642, 903
Tru9I	TTAA	3 cut(s)	537, 642, 903
TscAI	CASTG	1 cut(s)	532
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	4 cut(s)	240, 258, 361, 382
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	3 cut(s)	579, 608, 821
TspGWI	ACGGA	2 cut(s)	127, 169
TspRI	CASTG	1 cut(s)	532
VpaK11BI	GGWCC	2 cut(s)	157, 724
VspI	ATTAAT	1 cut(s)	537
XagI	CCTNNNNNAGG	1 cut(s)	495
XapI	RAATTY	1 cut(s)	925
XmnI	GAANNNNTTC	1 cut(s)	308
XspI	CTAG	2 cut(s)	492, 654
ZraI	GACGTC	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.