Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024810.1

Orthogroup ID

OG0009497

Physical Location & Seq

Genomic Coordinates Forward (+)

313 .. 663

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024810.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

atgaccctctccatttccatcccctcccctctctccgccccaatcctcaagctaaaccctaaaccccaccacctctcctccttccgattcctctccggccaccgcaggttcctccacggccagcggttatcggtctccgtcagggcgaagccgaaggacctcatcctcgggaacccctccgtcaccgtcgagaagggcaagtacagctacgacgtcgaaaccctaatcaacaaactcagcagcctcccgccacgtggcagcatcgcgcgttgcctggacatcttcaagaacaagctctccctgaacgacttcgccctggtgttcaaggagttcgcggcgcgtggcgactgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

117

Amino Acids

13.1

Weight (kDa)

10.28

Isoelectric Point (pI)

26.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74850
fragaria_vesca	FvH4_5g16180 FvH4_5g16180
malus_domestica	MD06G1183200.v1.1 MD14G1189200.v1.1
prunus_persica	Prupe.5G181900_v2.0.a1 Prupe.5G181900_v2.0.a1
pyrus_communis	pycom06g16220 pycom14g15690
rosa_chinensis	RchiOBHm_Chr7g0179951
rosa_laevigata	RLG00000005307
rosa_multiflora	Rmu_co7983378.1_g000001 Rmu_sc0024809.1_g000001 Rmu_sc0024810.1_g000001 Rmu_sc0031626.1_g000001
rosa_roxburghii	Rroxscaffold_3G00273280
rosa_rugosa	Rorug06G0429400
rosa_samantha	Rh7AG029900 Rh7BG029100 Rh7CG030800 Rh7DG030100
rosa_wichuraiana	Rw7G002390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	216
Acc36I	ACCTGC	1 cut(s)	96
AccII	CGCG	4 cut(s)	266, 268, 335, 340
AciI	CCGC	5 cut(s)	36, 103, 124, 248, 335
AcoI	YGGCCR	2 cut(s)	97, 118
AcvI	CACGTG	1 cut(s)	254
AcyI	GRCGYC	1 cut(s)	213
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	254
AgsI	TTSAA	2 cut(s)	286, 325
AjnI	CCWGG	2 cut(s)	273, 315
AloI	GAACNNNNNNTCC	2 cut(s)	281, 313
AluBI	AGCT	3 cut(s)	52, 207, 295
AluI	AGCT	3 cut(s)	52, 207, 295
Alw26I	GTCTC	1 cut(s)	139
Ama87I	CYCGRG	1 cut(s)	167
AoxI	GGCC	2 cut(s)	97, 118
ApeKI	GCWGC	2 cut(s)	240, 258
Asp700I	GAANNNNTTC	1 cut(s)	308
AspLEI	GCGC	2 cut(s)	268, 340
AspS9I	GGNCC	1 cut(s)	157
AsuHPI	GGTGA	1 cut(s)	175
AvaI	CYCGRG	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	157
BarI	GAAGNNNNNNTAC	2 cut(s)	185, 217
BbrPI	CACGTG	1 cut(s)	254
BbvI	GCAGC	2 cut(s)	252, 270
BccI	CCATC	1 cut(s)	26
BceAI	ACGGC	1 cut(s)	133
BciT130I	CCWGG	2 cut(s)	275, 317
BcoDI	GTCTC	1 cut(s)	139
BfuAI	ACCTGC	1 cut(s)	96
BisI	GCNGC	3 cut(s)	241, 259, 336
BlsI	GCNGC	3 cut(s)	242, 260, 337
Bme1390I	CCNGG	2 cut(s)	275, 317
Bme18I	GGWCC	1 cut(s)	157
BmeT110I	CYCGRG	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	2 cut(s)	110, 173
BmrFI	CCNGG	2 cut(s)	275, 317
BmsI	GCATC	1 cut(s)	270
BpuEI	CTTGAG	1 cut(s)	32
BsaAI	YACGTR	1 cut(s)	254
BsaHI	GRCGYC	1 cut(s)	213
BsaI	GGTCTC	1 cut(s)	139
BsaJI	CCNNGG	3 cut(s)	115, 166, 315
BsaXI	ACNNNNNCTCC	6 cut(s)	59, 62, 89, 92, 281, 311
Bsc4I	CCNNNNNNNGG	1 cut(s)	254
BseBI	CCWGG	2 cut(s)	275, 317
BseDI	CCNNGG	3 cut(s)	115, 166, 315
BseGI	GGATG	2 cut(s)	18, 162
BseLI	CCNNNNNNNGG	1 cut(s)	254
BseMII	CTCAG	1 cut(s)	250
BseRI	GAGGAG	1 cut(s)	67
BseXI	GCAGC	2 cut(s)	252, 270
Bsh1236I	CGCG	4 cut(s)	266, 268, 335, 340
BshFI	GGCC	2 cut(s)	99, 120
BsiHKCI	CYCGRG	1 cut(s)	167
BsiSI	CCGG	1 cut(s)	96
BslI	CCNNNNNNNGG	1 cut(s)	254
BsmAI	GTCTC	1 cut(s)	139
BsnI	GGCC	2 cut(s)	99, 120
Bso31I	GGTCTC	1 cut(s)	139
BsoBI	CYCGRG	1 cut(s)	167
BspACI	CCGC	5 cut(s)	36, 103, 124, 248, 335
BspANI	GGCC	2 cut(s)	99, 120
BspCNI	CTCAG	1 cut(s)	249
BspFNI	CGCG	4 cut(s)	266, 268, 335, 340
BspLI	GGNNCC	2 cut(s)	110, 173
BspMI	ACCTGC	1 cut(s)	96
BspTNI	GGTCTC	1 cut(s)	139
BssECI	CCNNGG	3 cut(s)	115, 166, 315
BssNI	GRCGYC	1 cut(s)	213
Bst2UI	CCWGG	2 cut(s)	275, 317
Bst4CI	ACNGT	1 cut(s)	187
BstACI	GRCGYC	1 cut(s)	213
BstBAI	YACGTR	1 cut(s)	254
BstC8I	GCNNGC	1 cut(s)	122
BstDEI	CTNAG	1 cut(s)	236
BstDSI	CCRYGG	1 cut(s)	115
BstF5I	GGATG	2 cut(s)	18, 162
BstFNI	CGCG	4 cut(s)	266, 268, 335, 340
BstHHI	GCGC	2 cut(s)	268, 340
BstMAI	GTCTC	1 cut(s)	139
BstMWI	GCNNNNNNNGC	1 cut(s)	204
BstNI	CCWGG	2 cut(s)	275, 317
BstSCI	CCNGG	2 cut(s)	273, 315
BstUI	CGCG	4 cut(s)	266, 268, 335, 340
BstV1I	GCAGC	2 cut(s)	252, 270
BsuRI	GGCC	2 cut(s)	99, 120
BtgI	CCRYGG	1 cut(s)	115
BtgZI	GCGATG	1 cut(s)	247
BtsCI	GGATG	2 cut(s)	18, 162
BveI	ACCTGC	1 cut(s)	96
Cac8I	GCNNGC	1 cut(s)	122
CfoI	GCGC	2 cut(s)	268, 340
Cfr13I	GGNCC	1 cut(s)	157
Csp6I	GTAC	1 cut(s)	202
CviJI	RGCY	7 cut(s)	52, 99, 120, 151, 207, 243, 295
CviKI_1	RGCY	7 cut(s)	52, 99, 120, 151, 207, 243, 295
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	1 cut(s)	236
EaeI	YGGCCR	2 cut(s)	97, 118
EciI	GGCGGA	1 cut(s)	25
Eco31I	GGTCTC	1 cut(s)	139
Eco47I	GGWCC	1 cut(s)	157
Eco72I	CACGTG	1 cut(s)	254
Eco88I	CYCGRG	1 cut(s)	167
EcoO109I	RGGNCCY	1 cut(s)	157
EcoRII	CCWGG	2 cut(s)	273, 315
FauI	CCCGC	1 cut(s)	255
Fnu4HI	GCNGC	3 cut(s)	241, 259, 336
FokI	GGATG	2 cut(s)	5, 149
Fsp4HI	GCNGC	3 cut(s)	241, 259, 336
GlaI	GCGC	2 cut(s)	267, 339
GluI	GCNGC	3 cut(s)	241, 259, 336
HaeIII	GGCC	2 cut(s)	99, 120
HapII	CCGG	1 cut(s)	96
HhaI	GCGC	2 cut(s)	268, 340
Hin1I	GRCGYC	1 cut(s)	213
Hin6I	GCGC	2 cut(s)	266, 338
HinP1I	GCGC	2 cut(s)	266, 338
HinfI	GANTC	1 cut(s)	87
HpaII	CCGG	1 cut(s)	96
HphI	GGTGA	1 cut(s)	175
Hpy188I	TCNGA	1 cut(s)	86
Hpy188III	TCNNGA	3 cut(s)	169, 190, 286
Hpy99I	CGWCG	3 cut(s)	191, 215, 218
HpyAV	CCTTC	3 cut(s)	91, 148, 187
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4IV	ACGT	2 cut(s)	213, 253
HpyF10VI	GCNNNNNNNGC	1 cut(s)	204
HpyF3I	CTNAG	1 cut(s)	236
HpySE526I	ACGT	2 cut(s)	213, 253
Hsp92I	GRCGYC	1 cut(s)	213
HspAI	GCGC	2 cut(s)	266, 338
Lsp1109I	GCAGC	2 cut(s)	252, 270
LweI	GCATC	1 cut(s)	270
MaeII	ACGT	2 cut(s)	213, 253
MaeIII	GTNAC	1 cut(s)	181
MboII	GAAGA	1 cut(s)	274
MroXI	GAANNNNTTC	1 cut(s)	308
MspA1I	CMGCKG	1 cut(s)	124
MspI	CCGG	1 cut(s)	96
MspR9I	CCNGG	2 cut(s)	275, 317
MvaI	CCWGG	2 cut(s)	275, 317
MvnI	CGCG	4 cut(s)	266, 268, 335, 340
MwoI	GCNNNNNNNGC	1 cut(s)	204
NlaIV	GGNNCC	2 cut(s)	110, 173
NmuCI	GTSAC	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	308
PfeI	GAWTC	1 cut(s)	87
PkrI	GCNGC	3 cut(s)	242, 260, 337
PmaCI	CACGTG	1 cut(s)	254
PmlI	CACGTG	1 cut(s)	254
Ppu21I	YACGTR	1 cut(s)	254
PpuMI	RGGWCCY	1 cut(s)	157
Psp5II	RGGWCCY	1 cut(s)	157
Psp6I	CCWGG	2 cut(s)	273, 315
PspCI	CACGTG	1 cut(s)	254
PspGI	CCWGG	2 cut(s)	273, 315
PspN4I	GGNNCC	2 cut(s)	110, 173
PspPI	GGNCC	1 cut(s)	157
PspPPI	RGGWCCY	1 cut(s)	157
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
SatI	GCNGC	3 cut(s)	241, 259, 336
Sau96I	GGNCC	1 cut(s)	157
ScrFI	CCNGG	2 cut(s)	275, 317
SetI	ASST	8 cut(s)	54, 75, 110, 162, 209, 216, 256, 297
SfaNI	GCATC	1 cut(s)	270
SinI	GGWCC	1 cut(s)	157
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
SsiI	CCGC	5 cut(s)	36, 103, 124, 248, 335
StyD4I	CCNGG	2 cut(s)	273, 315
TaaI	ACNGT	1 cut(s)	187
TaiI	ACGT	2 cut(s)	216, 256
TaqI	TCGA	2 cut(s)	189, 216
TaqII	GACCGA	1 cut(s)	121
TatI	WGTACW	1 cut(s)	201
TauI	GCSGC	1 cut(s)	338
TfiI	GAWTC	1 cut(s)	87
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	2 cut(s)	240, 258
Tsp45I	GTSAC	1 cut(s)	181
TspGWI	ACGGA	2 cut(s)	127, 169
VpaK11BI	GGWCC	1 cut(s)	157
XmnI	GAANNNNTTC	1 cut(s)	308
ZraI	GACGTC	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.