Rmu_co8361505.1_g000001

Brefeldin A-inhibited guanine nucleotide-exchange protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8361505.1
OG0007735
Physical Location & Seq
Forward (+)
1 .. 1056
1056 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8361505.1_g000001.1.cds

Sequence Viewer

Length: 555 bp
gcaatagtgacaattgcagatgaagatgggaactacctgcaagaagcttgggagcatattttgacatgtgtttcccgctttgaacatcttcatctcctgggagagggtgctcctccagatgctactttctttgcttttcctcagaatgaatcagaaaaatcaaagcaagccaagtcaactgtccttcctgttttaaaaaagaagggccaagggaagatgcagtatgctgctgctgccgtgttgagaggttcatatgatagtgctggtattggtgggaattcttctgggatggtcacatcagaacagatgaacaatttggtttctaacttaaatatgttagaacaagttggagacatgagccgcatattcacacggagtcaaaagctgaacagtgaggcaattatagattttgttaaggctctttgcaaggtctctatggaggaattgcgatctgcatctgatcctcgggttttcagccttacaaagatggttgagattgcgtacggctcaccttacttcaaatcttatttctgtgcttccatgacaaaattatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0001817 GO:0001819 GO:0001881 GO:0003674 GO:0005085 GO:0005086 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005815 GO:0005829 GO:0005856 GO:0005874 GO:0005879 GO:0005881 GO:0005929 GO:0005930 GO:0006810 GO:0006887 GO:0006892 GO:0006893 GO:0006996 GO:0007032 GO:0007154 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009553 GO:0009561 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015630 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0019899 GO:0023051 GO:0023052 GO:0030425 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032279 GO:0032280 GO:0032501 GO:0032502 GO:0032588 GO:0032680 GO:0032760 GO:0032838 GO:0032940 GO:0033036 GO:0034237 GO:0034613 GO:0035556 GO:0036477 GO:0042886 GO:0042995 GO:0043001 GO:0043005 GO:0043112 GO:0043170 GO:0043197 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044260 GO:0044309 GO:0044422 GO:0044424 GO:0044430 GO:0044431 GO:0044441 GO:0044444 GO:0044446 GO:0044447 GO:0044456 GO:0044463 GO:0044464 GO:0045184 GO:0045202 GO:0046903 GO:0048193 GO:0048229 GO:0048518 GO:0048856 GO:0050789 GO:0050794 GO:0050811 GO:0050896 GO:0051018 GO:0051020 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051641 GO:0051716 GO:0055037 GO:0061951 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072657 GO:0072659 GO:0090150 GO:0097014 GO:0097447 GO:0097458 GO:0097708 GO:0098588 GO:0098772 GO:0098791 GO:0098794 GO:0098876 GO:0098984 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0120025 GO:0120038 GO:1903555 GO:1903557 GO:1990778
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

184

Amino Acids

20.23

Weight (kDa)

6.36

Isoelectric Point (pI)

45.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 45
AciI CCGC 2 cut(s) 76, 361
AclWI GGATC 1 cut(s) 455
AcsI RAATTY 1 cut(s) 277
AfaI GTAC 1 cut(s) 503
AfiI CCNNNNNNNGG 1 cut(s) 103
AflIII ACRYGT 1 cut(s) 65
AgsI TTSAA 2 cut(s) 83, 520
AjnI CCWGG 1 cut(s) 96
AluBI AGCT 2 cut(s) 47, 385
AluI AGCT 2 cut(s) 47, 385
Alw21I GWGCWC 1 cut(s) 112
Alw26I GTCTC 2 cut(s) 345, 436
AlwI GGATC 1 cut(s) 455
Ama87I CYCGRG 1 cut(s) 465
AoxI GGCC 1 cut(s) 205
ApeKI GCWGC 3 cut(s) 227, 230, 233
ApoI RAATTY 1 cut(s) 277
Asp700I GAANNNNTTC 1 cut(s) 87
AspS9I GGNCC 1 cut(s) 205
AsuHPI GGTGA 1 cut(s) 501
AvaI CYCGRG 1 cut(s) 465
Bbv12I GWGCWC 1 cut(s) 112
BbvI GCAGC 3 cut(s) 214, 217, 220
BccI CCATC 3 cut(s) 20, 283, 481
BceAI ACGGC 2 cut(s) 221, 520
BciT130I CCWGG 1 cut(s) 98
BcoDI GTCTC 2 cut(s) 345, 436
BfuAI ACCTGC 1 cut(s) 45
BisI GCNGC 4 cut(s) 228, 231, 234, 361
BlsI GCNGC 4 cut(s) 229, 232, 235, 362
Bme1390I CCNGG 1 cut(s) 98
BmeT110I CYCGRG 1 cut(s) 465
BmgT120I GGNCC 1 cut(s) 205
BmrFI CCNGG 1 cut(s) 98
BmsI GCATC 3 cut(s) 109, 207, 464
BpmI CTGGAG 1 cut(s) 99
BsaBI GATNNNNATC 1 cut(s) 454
BsaI GGTCTC 1 cut(s) 436
BsaJI CCNNGG 3 cut(s) 97, 208, 464
Bsc4I CCNNNNNNNGG 1 cut(s) 103
Bse8I GATNNNNATC 1 cut(s) 454
BseBI CCWGG 1 cut(s) 98
BseDI CCNNGG 3 cut(s) 97, 208, 464
BseGI GGATG 1 cut(s) 294
BseJI GATNNNNATC 1 cut(s) 454
BseLI CCNNNNNNNGG 1 cut(s) 103
BseMII CTCAG 1 cut(s) 155
BseRI GAGGAG 1 cut(s) 102
BseXI GCAGC 3 cut(s) 214, 217, 220
BshFI GGCC 1 cut(s) 207
BsiHKAI GWGCWC 1 cut(s) 112
BsiHKCI CYCGRG 1 cut(s) 465
BsiWI CGTACG 1 cut(s) 501
BslI CCNNNNNNNGG 1 cut(s) 103
BsmAI GTCTC 2 cut(s) 345, 436
BsnI GGCC 1 cut(s) 207
Bso31I GGTCTC 1 cut(s) 436
BsoBI CYCGRG 1 cut(s) 465
Bsp1286I GDGCHC 1 cut(s) 112
Bsp143I GATC 2 cut(s) 449, 460
BspACI CCGC 2 cut(s) 76, 361
BspANI GGCC 1 cut(s) 207
BspCNI CTCAG 1 cut(s) 154
BspMI ACCTGC 1 cut(s) 45
BspPI GGATC 1 cut(s) 455
BspTNI GGTCTC 1 cut(s) 436
BssECI CCNNGG 3 cut(s) 97, 208, 464
BssMI GATC 2 cut(s) 449, 460
BssT1I CCWWGG 1 cut(s) 208
Bst2UI CCWGG 1 cut(s) 98
Bst4CI ACNGT 2 cut(s) 181, 392
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 1 cut(s) 141
BstENI CCTNNNNNAGG 1 cut(s) 101
BstF5I GGATG 1 cut(s) 294
BstKTI GATC 2 cut(s) 452, 463
BstMAI GTCTC 2 cut(s) 345, 436
BstMBI GATC 2 cut(s) 449, 460
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstNI CCWGG 1 cut(s) 98
BstNSI RCATGY 1 cut(s) 69
BstSCI CCNGG 1 cut(s) 96
BstV1I GCAGC 3 cut(s) 214, 217, 220
BsuRI GGCC 1 cut(s) 207
BtsCI GGATG 1 cut(s) 294
BtsIMutI CAGTG 1 cut(s) 397
BveI ACCTGC 1 cut(s) 45
Cac8I GCNNGC 1 cut(s) 168
Cfr13I GGNCC 1 cut(s) 205
Csp6I GTAC 1 cut(s) 502
CviAII CATG 3 cut(s) 66, 355, 541
CviJI RGCY 8 cut(s) 47, 170, 207, 360, 385, 419, 477, 507
CviKI_1 RGCY 8 cut(s) 47, 170, 207, 360, 385, 419, 477, 507
CviQI GTAC 1 cut(s) 502
DdeI CTNAG 1 cut(s) 141
DpnI GATC 2 cut(s) 451, 462
DpnII GATC 2 cut(s) 449, 460
DraI TTTAAA 1 cut(s) 195
Eco130I CCWWGG 1 cut(s) 208
Eco31I GGTCTC 1 cut(s) 436
Eco88I CYCGRG 1 cut(s) 465
EcoNI CCTNNNNNAGG 1 cut(s) 101
EcoRI GAATTC 1 cut(s) 277
EcoRII CCWGG 1 cut(s) 96
EcoT14I CCWWGG 1 cut(s) 208
ErhI CCWWGG 1 cut(s) 208
FaeI CATG 3 cut(s) 69, 358, 544
FatI CATG 3 cut(s) 65, 354, 540
FauI CCCGC 1 cut(s) 83
FauNDI CATATG 1 cut(s) 253
Fnu4HI GCNGC 4 cut(s) 228, 231, 234, 361
FokI GGATG 1 cut(s) 301
Fsp4HI GCNGC 4 cut(s) 228, 231, 234, 361
GluI GCNGC 4 cut(s) 228, 231, 234, 361
GsuI CTGGAG 1 cut(s) 99
HaeIII GGCC 1 cut(s) 207
Hin1II CATG 3 cut(s) 69, 358, 544
HincII GTYRAC 1 cut(s) 177
HindII GTYRAC 1 cut(s) 177
HindIII AAGCTT 1 cut(s) 45
HinfI GANTC 2 cut(s) 149, 376
HphI GGTGA 1 cut(s) 501
Hpy166II GTNNAC 1 cut(s) 177
Hpy188I TCNGA 4 cut(s) 144, 154, 301, 460
Hpy188III TCNNGA 1 cut(s) 116
Hpy8I GTNNAC 1 cut(s) 177
HpyAV CCTTC 2 cut(s) 194, 196
HpyCH4III ACNGT 2 cut(s) 181, 392
HpyCH4V TGCA 5 cut(s) 17, 40, 220, 426, 455
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 1 cut(s) 141
Hsp92II CATG 3 cut(s) 69, 358, 544
Kzo9I GATC 2 cut(s) 449, 460
LmnI GCTCC 2 cut(s) 52, 115
LpnPI CCDG 7 cut(s) 50, 83, 110, 129, 201, 249, 270
Lsp1109I GCAGC 3 cut(s) 214, 217, 220
LweI GCATC 3 cut(s) 109, 207, 464
MaeIII GTNAC 2 cut(s) 7, 292
MalI GATC 2 cut(s) 451, 462
MboI GATC 2 cut(s) 449, 460
MboII GAAGA 4 cut(s) 35, 80, 226, 273
MfeI CAATTG 1 cut(s) 12
MhlI GDGCHC 1 cut(s) 112
MluCI AATT 6 cut(s) 12, 277, 313, 399, 443, 548
MlyI GAGTC 1 cut(s) 385
MmeI TCCRAC 1 cut(s) 328
MnlI CCTC 7 cut(s) 97, 123, 150, 239, 388, 433, 474
MroXI GAANNNNTTC 1 cut(s) 87
MseI TTAA 3 cut(s) 194, 329, 414
MspR9I CCNGG 1 cut(s) 98
MunI CAATTG 1 cut(s) 12
MvaI CCWGG 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 233
NdeI CATATG 1 cut(s) 253
NdeII GATC 2 cut(s) 449, 460
NlaIII CATG 3 cut(s) 69, 358, 544
NmuCI GTSAC 2 cut(s) 7, 292
NspI RCATGY 1 cut(s) 69
PciI ACATGT 1 cut(s) 65
PdmI GAANNNNTTC 1 cut(s) 87
PfeI GAWTC 1 cut(s) 149
Pfl23II CGTACG 1 cut(s) 501
PkrI GCNGC 4 cut(s) 229, 232, 235, 362
PleI GAGTC 1 cut(s) 384
PpsI GAGTC 1 cut(s) 384
PscI ACATGT 1 cut(s) 65
Psp6I CCWGG 1 cut(s) 96
PspGI CCWGG 1 cut(s) 96
PspLI CGTACG 1 cut(s) 501
PspPI GGNCC 1 cut(s) 205
RsaI GTAC 1 cut(s) 503
RsaNI GTAC 1 cut(s) 502
SaqAI TTAA 3 cut(s) 194, 329, 414
SatI GCNGC 4 cut(s) 228, 231, 234, 361
Sau3AI GATC 2 cut(s) 449, 460
Sau96I GGNCC 1 cut(s) 205
SchI GAGTC 1 cut(s) 385
ScrFI CCNGG 1 cut(s) 98
SduI GDGCHC 1 cut(s) 112
SetI ASST 6 cut(s) 39, 49, 250, 387, 432, 514
SfaNI GCATC 3 cut(s) 109, 207, 464
Sse9I AATT 6 cut(s) 12, 277, 313, 399, 443, 548
SsiI CCGC 2 cut(s) 76, 361
StyD4I CCNGG 1 cut(s) 96
StyI CCWWGG 1 cut(s) 208
TaaI ACNGT 2 cut(s) 181, 392
TasI AATT 6 cut(s) 12, 277, 313, 399, 443, 548
TauI GCSGC 1 cut(s) 363
TfiI GAWTC 1 cut(s) 149
Tru1I TTAA 3 cut(s) 194, 329, 414
Tru9I TTAA 3 cut(s) 194, 329, 414
TscAI CASTG 1 cut(s) 397
TseFI GTSAC 2 cut(s) 7, 292
TseI GCWGC 3 cut(s) 227, 230, 233
Tsp45I GTSAC 2 cut(s) 7, 292
TspDTI ATGAA 5 cut(s) 36, 80, 162, 240, 323
TspGWI ACGGA 1 cut(s) 388
TspRI CASTG 1 cut(s) 397
XagI CCTNNNNNAGG 1 cut(s) 101
XapI RAATTY 1 cut(s) 277
XceI RCATGY 1 cut(s) 69
XmnI GAANNNNTTC 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.