Rorug01G0213600

Brefeldin A-inhibited guanine nucleotide-exchange protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0007735
Physical Location & Seq
Forward (+)
30421671 .. 30425509
3839 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0213600.1

Sequence Viewer

Length: 3756 bp
ATGGAAGTTAGTAGTGGCCCTGGTGAACCTCGTTGGAGACTCACAGGTTTTTATGGTTATGCTCGTACCAGTGAACGTGACTTATCTTGGCAACTAATCAGAGACTTATGTGATCTTGATTCCCTTCCTTGGGTCATCATCGGGGACTTCAATGAGATATTGAACAATGGTGAGAAAACTAGTGGTCCAATTCGTCCTGAAAGGCAGATGCGTTGTTTCAGGGAAGCTTTGGGGTACAGTGAGTTGATTGATTTAGGGTTCCAGGGGGCAAAAATGACTTGGTGGAATTCTGAGACTCAACTCAGACTTGATAGGGCAGTCGCAACTGCAAGTTGGAGCGATGTTTTTGGTCATTCTAGGGTCCTGATCCTTGCCCCAAGTGACTCAGATCATACACCGATCTTACTTCAGGCTAGCAGTGTTCAACTGCTTAAACGACCACGCAGACATAGATTCAAATTTGAATCTTTTTGGTTGCAGCATGAAGAGTGTGATCCGTTGGTGCTAGACAAGTGGCAAACTGATTTTGAAGGGGTTCCAATGTATGCGTTGACCAGAAAGATCATATGTACACGTCGAGCTCTAGAAACATGGCAGCAGCAAACGTTTAGATTTCGGCAGCAGCAAATGTTTGAAGTACGGGGCCGATTGGAGTTTTTGATGGGTGAACAGTTAACTGTCGAACTTCATGACGAGAAGAAAACTCTAATGGCTTCATTGCAGGATCTGTTATCCCAAGAAGAGGCTTTTTGGAAGCAACGAGCGAAGGTTACTTGGCTACAGGAAGGAGACAGAAATAGTGGTTTCTTTCACAGGAAGGCAACTAACAGGAAGAGGAAAAATTCTCTTTTGGGTTTGTTTGATGCTGAAGGAAATTGGAAGGATGATGATGATGGTATGGAGAGGGTAGTTACCTCTTATTTTTCAAAAATGTTCACAGCCTCTTCTCTGGATAGTGAGGCAGTGGAATTTACTTTGGCTGTTATCAAGCCCTGTGTCACTGAGGAGATGAATCAGAGTCTGTGTGCGCAGTATACAGAGGAAGAAGTGCGGTGTGCGTTGTTCCAAATGTATCCTACTAAATCCCCAAGGCCAGACGGTATGCCACCTTTATTTTTTCAACATTACCGGGAAGCTATTGGTAAAGATGTTACTGCAGCTGTTCAAAATTTTTTGCATACTGGAGCTTTGTTGAAACAAATAAATTTCAAGCACATCTGTTTAATTCCTAAAGTGCAAAATCCAGAGTCGATGGGGGATTTGAGACCTATTGCTTTATGCAACGTGATCTACAAGCTATCTTCGAAGGTAATTGCCAACAGATTGAAGGTCTTTTTGCCAGCTCTTATTTCTCCTTTCCAAAGTGCTTTCGTGCCAGGGAGATTAATAACTGATAATATCTTAGTAGCAAATGAAGTGGCTCATTTTGTTCATAATAAAAGGCAGGGTCATGATGGATATATGGCTCTAAAGTTAGATCTCAGCAAGGCTTATGATCGAATGGAATTGACTTTCTTACGCAAAGTGTTGTTGCGTTTTGGTTTTGCTCCTGTTTGGATTGAAGTTGTTATGCAATGTGTCACCTCTGTGAGATACTCTTTTCTGGTACGTGGTAAGCCTCGAGGTTATGTGATTCCTTCTCGAGGGTTGAGACAGGGAGATCCCCTCTCCCCTTATTTATTTCTACTTGGAGCTGAGGGTTTCTCGGCCTTGCTACAACAGAAACAAGAGTTGGGTTTGCTTCTAGGTATTGCAATCTGTCAAAATGCCCCGTATGTGAACCATCTCTTATTTGCAGATGACAGCATGCTTTATGCTCAAGCTACTCCTGAGGCTTGCTTTCAAATTAAGGAGGTGATTGAAGTGTATGGAAGAGCTTCTGGTCAAGTGGTAAATTTCCAAAAAAGCTCAGTTGTCTTTAGTAAGAATGTTGGTGAAACTGTTCAAAATTCTGTGGCTCATTTGCTTGGCATGGAGATTGTGGATTCACATGAAAGGTATCTTGGTTTGCCTACTTATGTGGGACGCAAGAAGACTGCTACATTCGAGTATATTAAGGAGAGGCTTGGTGAGAAGTTGAAGCTTTGGCAAGGCAAATTACTTAGTGGTGCTGGTAAGGATATCTTAATTCGAGTTGTGGCTCAGGCTCTTCCTAACCATGCTATGAGTGTCTTCCAACTTACAAAGATTTTTTGTGAGGATTTGGAACAGATGTGTGCAAGATTCTGGTGGGGTAGTATCTCAGATAAGCGTAAAATTCACTGGAAAAAGTGGGATGATTTATGTCATGCCAAAGAAGTGGGAGGATTGGGGTTCAGAAGCTTGTCTGATTTTAATATGTCTATGCTTGCTAAGCAAGCATGGAGGGTGGTCTCTAATCCGGAGTCTTTGGTGGCACAATTATATAAGGCGCGTTATTATCCTGAGGGTGATTTTTGGAATGCGACTGCGCATGCTTTACCTTCTTATTCTTGGCGTAGTATTTTTGCTACAAGGGATTTTATCCAGACTGGTGCTTTTTGGCAAGTGGGTAATGGACATAATGTCTCTGTGTGGAACGATGCCTGGATACCCAAGTTACCTGCTCATAAGCTTCTTGGTGCTTTAGTGAGTCAACATAATGTGAATATGGTGGATGAACTGATTACTCCTCCAAGTAATTGGAATGAGAGCAAGGTGCGTTCCATTTTTACTCCTGAGGATGCAGAAGCAATACTTGCTATTCCTTTGAGCTCTAGACAACCAGAAGACAGGTTAACATGGCATTTTGAGAGAAAAGCGAGTTTGGAAAAAATTTGGAATGTTAAGATGCCTAGTTCTGCTAAGGTTACTGCATGGAAAATTTGTCACAATATCTTGCCTACTAGGGACCGATTAGCTTCTAGACATGTGGAGTTGGAGTCTCAGATTTGCGTTCTGTGCAATGCTGATGCAGAGACAGTTATTCATATGTGTCGTAATTGTACTTTTACAAGGGATGTGTTTAGTACCAATGTTAGCATCAAGGGTTGTTGTCTAGGGACTGATTCTGATGATTTGGATGCCTTGAGTTGGTTGACGTTTTGCTCTGAGAAACTGTCAAAGACTGCCTTTGCTCATCTTTTATTTTTGATTTGGGGAATCTGGAAAGAACGGAATGTTAGAGTGTGGGAAAACAAAATCACTTCAACTTGTGATATAGCTCTCATGTCTTCTAGAAGACTTAGTAATTTCATCTTTCATAACTCAAAGTTACAGCGAGTTCAGAATGTGAGGAGACAATTGAAATGGAAAGCACCTCCTCAAAGTTGGGTAAAATTGAATTTTGATGGTGCATATAATGGTGGGAATGGCAGAGCGGCTATTGGATTTCTGGTTAGGGATGCCAATGGTAATTTTGTCAGTGCAGTTGGGAAGGTAATAGACCATGTTCAATCTGCTGAACATGCCGAGCTATTGGCCTGTAGGGGAGCTGTAACATTTGCTCTGGAACAAGCTTTACAGCCTGTTATTTTGGAGACAAATTGCTTAGTTTTGCAGCAACAGTTGACTCAAGCTAGAACTCCAAATACCTCATTCCTTGGGAGGCTCTATGAGGATATAGGTGAAGATTTAGCACTTATGGTCAGTTCAAGAATTGTTCATGTCAGAAGGGAGGCAAATATGGCTGCGCATGCTTTGGCAGCCTATGCTTCGGTACAAGATCAGAACTTCTTTTTCCTTTCTGTTCCTTCTTTTATTCATACTGTAATTGATGCTGAAAAGCATGTACCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0001817 GO:0001819 GO:0001881 GO:0003674 GO:0005085 GO:0005086 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005815 GO:0005829 GO:0005856 GO:0005874 GO:0005879 GO:0005881 GO:0005929 GO:0005930 GO:0006810 GO:0006887 GO:0006892 GO:0006893 GO:0006996 GO:0007032 GO:0007154 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009553 GO:0009561 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015630 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0019899 GO:0023051 GO:0023052 GO:0030425 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032279 GO:0032280 GO:0032501 GO:0032502 GO:0032588 GO:0032680 GO:0032760 GO:0032838 GO:0032940 GO:0033036 GO:0034237 GO:0034613 GO:0035556 GO:0036477 GO:0042886 GO:0042995 GO:0043001 GO:0043005 GO:0043112 GO:0043170 GO:0043197 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044260 GO:0044309 GO:0044422 GO:0044424 GO:0044430 GO:0044431 GO:0044441 GO:0044444 GO:0044446 GO:0044447 GO:0044456 GO:0044463 GO:0044464 GO:0045184 GO:0045202 GO:0046903 GO:0048193 GO:0048229 GO:0048518 GO:0048856 GO:0050789 GO:0050794 GO:0050811 GO:0050896 GO:0051018 GO:0051020 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051641 GO:0051716 GO:0055037 GO:0061951 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072657 GO:0072659 GO:0090150 GO:0097014 GO:0097447 GO:0097458 GO:0097708 GO:0098588 GO:0098772 GO:0098791 GO:0098794 GO:0098876 GO:0098984 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0120025 GO:0120038 GO:1903555 GO:1903557 GO:1990778
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

1251

Amino Acids

142.62

Weight (kDa)

8.69

Isoelectric Point (pI)

41.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 14 - 131 1.3e-06 Endonuclease/Exonuclease/phosphatase family
RVT_1 PF00078 410 - 659 7.3e-28 Reverse transcriptase (RNA-dependent DNA polymerase)
zf-RVT PF13966 927 - 994 2.5e-12 zinc-binding in reverse transcriptase
RVT_3 PF13456 1101 - 1224 1.2e-21 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 1620
Acc16I TGCGCA 3 cut(s) 1029, 2451, 3651
Acc36I ACCTGC 1 cut(s) 2590
AccBSI CCGCTC 1 cut(s) 3338
AccI GTMKAC 1 cut(s) 1034
AccII CGCG 1 cut(s) 2413
AccIII TCCGGA 1 cut(s) 2380
AciI CCGC 2 cut(s) 1051, 3338
AclI AACGTT 1 cut(s) 605
AclWI GGATC 4 cut(s) 361, 488, 732, 1655
AcuI CTGAAG 2 cut(s) 392, 888
AfaI GTAC 9 cut(s) 67, 236, 571, 639, 1608, 2965, 2989, 3678, 3750
AfiI CCNNNNNNNGG 5 cut(s) 129, 130, 742, 1643, 3051
AflIII ACRYGT 2 cut(s) 572, 2887
AhdI GACNNNNNGTC 1 cut(s) 2543
AhlI ACTAGT 1 cut(s) 179
AjiI CACGTC 1 cut(s) 575
AjnI CCWGG 4 cut(s) 19, 261, 1375, 2564
AjuI GAANNNNNNNTTGG 4 cut(s) 1715, 1747, 1986, 2018
AleI CACNNNNGTG 1 cut(s) 1586
Alw21I GWGCWC 2 cut(s) 583, 2735
AlwI GGATC 4 cut(s) 361, 488, 732, 1655
AlwNI CAGNNNCTG 2 cut(s) 727, 1021
Ama87I CYCGRG 2 cut(s) 1620, 1641
Aor13HI TCCGGA 1 cut(s) 2380
AoxI GGCC 5 cut(s) 16, 643, 1091, 1707, 3438
ApeKI GCWGC 9 cut(s) 478, 595, 598, 619, 622, 1157, 3517, 3647, 3662
AseI ATTAAT 1 cut(s) 1385
Asp700I GAANNNNTTC 3 cut(s) 534, 1876, 1941
AspLEI GCGC 4 cut(s) 1030, 2413, 2452, 3652
AspS9I GGNCC 5 cut(s) 17, 185, 361, 643, 2869
AsuC2I CCSGG 1 cut(s) 1130
AsuHPI GGTGA 9 cut(s) 35, 182, 677, 1573, 1867, 1946, 2081, 2441, 3596
AsuII TTCGAA 1 cut(s) 1304
AsuNHI GCTAGC 1 cut(s) 413
AvaI CYCGRG 2 cut(s) 1620, 1641
AvaII GGWCC 3 cut(s) 185, 361, 2869
AxyI CCTNAGG 3 cut(s) 1830, 2424, 2697
BaeI ACNNNNGTAYC 2 cut(s) 2561, 2594
BanII GRGCYC 2 cut(s) 583, 2735
BbsI GAAGAC 5 cut(s) 2039, 2164, 2754, 3183, 3205
Bbv12I GWGCWC 2 cut(s) 583, 2735
BbvCI CCTCAGC 1 cut(s) 1695
BbvI GCAGC 9 cut(s) 490, 607, 610, 631, 634, 1169, 3529, 3634, 3674
BccI CCATC 6 cut(s) 655, 887, 1246, 1448, 1791, 3302
BciT130I CCWGG 4 cut(s) 21, 263, 1377, 2566
BciVI GTATCC 2 cut(s) 1083, 2562
BcnI CCSGG 1 cut(s) 1130
BcuI ACTAGT 1 cut(s) 179
BfmI CTRYAG 3 cut(s) 779, 1155, 3442
BfuAI ACCTGC 1 cut(s) 2590
BfuI GTATCC 2 cut(s) 1083, 2562
BglII AGATCT 1 cut(s) 1477
BlpI GCTNAGC 1 cut(s) 2352
Bme1390I CCNGG 5 cut(s) 21, 263, 1130, 1377, 2566
Bme18I GGWCC 3 cut(s) 185, 361, 2869
BmeRI GACNNNNNGTC 1 cut(s) 2543
BmeT110I CYCGRG 2 cut(s) 1620, 1641
BmgBI CACGTC 1 cut(s) 575
BmgT120I GGNCC 5 cut(s) 17, 185, 361, 643, 2869
BmiI GGNNCC 5 cut(s) 260, 362, 537, 644, 2870
BmrFI CCNGG 5 cut(s) 21, 263, 1130, 1377, 2566
BmtI GCTAGC 1 cut(s) 417
BpiI GAAGAC 5 cut(s) 2039, 2164, 2754, 3183, 3205
BplI GAGNNNNNCTC 4 cut(s) 1650, 1682, 1688, 1720
BpmI CTGGAG 1 cut(s) 1203
Bpu10I CCTNAGC 3 cut(s) 1695, 2142, 2823
Bpu1102I GCTNAGC 1 cut(s) 2352
Bpu14I TTCGAA 1 cut(s) 1304
BpuEI CTTGAG 3 cut(s) 1803, 3067, 3516
BpuMI CCSGG 1 cut(s) 1130
BsaAI YACGTR 1 cut(s) 1610
BsaI GGTCTC 2 cut(s) 1258, 2377
BsaJI CCNNGG 6 cut(s) 19, 128, 262, 1088, 1376, 3559
BsaWI WCCGGW 1 cut(s) 2380
BsaXI ACNNNNNCTCC 2 cut(s) 2885, 2915
Bsc4I CCNNNNNNNGG 5 cut(s) 129, 130, 742, 1643, 3051
Bse1I ACTGG 4 cut(s) 69, 1186, 2267, 2515
Bse21I CCTNAGG 3 cut(s) 1830, 2424, 2697
Bse3DI GCAATG 3 cut(s) 716, 1580, 2929
BseAI TCCGGA 1 cut(s) 2380
BseBI CCWGG 4 cut(s) 21, 263, 1377, 2566
BseDI CCNNGG 6 cut(s) 19, 128, 262, 1088, 1376, 3559
BseGI GGATG 7 cut(s) 889, 2281, 2641, 2707, 2983, 3046, 3367
BseLI CCNNNNNNNGG 5 cut(s) 129, 130, 742, 1643, 3051
BseMI GCAATG 3 cut(s) 716, 1580, 2929
BseNI ACTGG 4 cut(s) 69, 1186, 2267, 2515
BseRI GAGGAG 4 cut(s) 1019, 2640, 3268, 3270
BseXI GCAGC 9 cut(s) 490, 607, 610, 631, 634, 1169, 3529, 3634, 3674
BsgI GTGCAG 1 cut(s) 3405
Bsh1236I CGCG 1 cut(s) 2413
BshFI GGCC 5 cut(s) 18, 645, 1093, 1709, 3440
BsiHKAI GWGCWC 2 cut(s) 583, 2735
BsiHKCI CYCGRG 2 cut(s) 1620, 1641
BsiSI CCGG 2 cut(s) 1129, 2381
BslFI GGGAC 4 cut(s) 158, 2037, 2882, 3034
BslI CCNNNNNNNGG 5 cut(s) 129, 130, 742, 1643, 3051
BsmFI GGGAC 4 cut(s) 158, 2037, 2882, 3034
BsmI GAATGC 1 cut(s) 2446
BsnI GGCC 5 cut(s) 18, 645, 1093, 1709, 3440
Bso31I GGTCTC 2 cut(s) 1258, 2377
BsoBI CYCGRG 2 cut(s) 1620, 1641
Bsp119I TTCGAA 1 cut(s) 1304
Bsp1286I GDGCHC 2 cut(s) 583, 2735
Bsp13I TCCGGA 1 cut(s) 2380
Bsp1407I TGTACA 1 cut(s) 569
Bsp1720I GCTNAGC 1 cut(s) 2352
BspACI CCGC 2 cut(s) 1051, 3338
BspANI GGCC 5 cut(s) 18, 645, 1093, 1709, 3440
BspEI TCCGGA 1 cut(s) 2380
BspFNI CGCG 1 cut(s) 2413
BspHI TCATGA 2 cut(s) 688, 1450
BspLI GGNNCC 5 cut(s) 260, 362, 537, 644, 2870
BspMAI CTGCAG 1 cut(s) 1159
BspMI ACCTGC 1 cut(s) 2590
BspOI GCTAGC 1 cut(s) 417
BspPI GGATC 4 cut(s) 361, 488, 732, 1655
BspQI GCTCTTC 2 cut(s) 1867, 2154
BspT104I TTCGAA 1 cut(s) 1304
BspTNI GGTCTC 2 cut(s) 1258, 2377
BsrBI CCGCTC 1 cut(s) 3338
BsrDI GCAATG 3 cut(s) 716, 1580, 2929
BsrGI TGTACA 1 cut(s) 569
BsrI ACTGG 4 cut(s) 69, 1186, 2267, 2515
BssECI CCNNGG 6 cut(s) 19, 128, 262, 1088, 1376, 3559
BssNAI GTATAC 1 cut(s) 1035
BssT1I CCWWGG 3 cut(s) 128, 1088, 3559
Bst1107I GTATAC 1 cut(s) 1035
Bst2UI CCWGG 4 cut(s) 21, 263, 1377, 2566
Bst4CI ACNGT 9 cut(s) 239, 672, 679, 1100, 1942, 2941, 3078, 3525, 3727
Bst6I CTCTTC 6 cut(s) 480, 735, 827, 949, 1867, 2154
BstAPI GCANNNNNTGC 2 cut(s) 2717, 3668
BstAUI TGTACA 1 cut(s) 569
BstBAI YACGTR 1 cut(s) 1610
BstBI TTCGAA 1 cut(s) 1304
BstC8I GCNNGC 8 cut(s) 415, 1341, 1808, 1837, 2349, 2358, 2454, 3654
BstENI CCTNNNNNAGG 1 cut(s) 1641
BstF5I GGATG 7 cut(s) 889, 2281, 2641, 2707, 2983, 3046, 3367
BstFNI CGCG 1 cut(s) 2413
BstHHI GCGC 4 cut(s) 1030, 2413, 2452, 3652
BstMWI GCNNNNNNNGC 9 cut(s) 2353, 2357, 2717, 2919, 3425, 3644, 3653, 3662, 3668
BstNI CCWGG 4 cut(s) 21, 263, 1377, 2566
BstNSI RCATGY 6 cut(s) 1810, 2456, 2891, 3428, 3656, 3749
BstSCI CCNGG 5 cut(s) 19, 261, 1128, 1375, 2564
BstSFI CTRYAG 3 cut(s) 779, 1155, 3442
BstUI CGCG 1 cut(s) 2413
BstV1I GCAGC 9 cut(s) 490, 607, 610, 631, 634, 1169, 3529, 3634, 3674
BstV2I GAAGAC 5 cut(s) 2039, 2164, 2754, 3183, 3205
BstX2I RGATCY 3 cut(s) 724, 1477, 1660
BstXI CCANNNNNNTGG 2 cut(s) 2299, 2661
BstYI RGATCY 3 cut(s) 724, 1477, 1660
BstZ17I GTATAC 1 cut(s) 1035
Bsu36I CCTNAGG 3 cut(s) 1830, 2424, 2697
BsuI GTATCC 2 cut(s) 1083, 2562
BsuRI GGCC 5 cut(s) 18, 645, 1093, 1709, 3440
BtgZI GCGATG 1 cut(s) 354
BtrI CACGTC 1 cut(s) 575
BtsCI GGATG 7 cut(s) 889, 2281, 2641, 2707, 2983, 3046, 3367
BtsI GCAGTG 2 cut(s) 424, 969
BtsIMutI CAGTG 7 cut(s) 76, 244, 424, 969, 999, 2260, 3388
BveI ACCTGC 1 cut(s) 2590
Cac8I GCNNGC 8 cut(s) 415, 1341, 1808, 1837, 2349, 2358, 2454, 3654
CaiI CAGNNNCTG 2 cut(s) 727, 1021
CciI TCATGA 2 cut(s) 688, 1450
CfoI GCGC 4 cut(s) 1030, 2413, 2452, 3652
Cfr13I GGNCC 5 cut(s) 17, 185, 361, 643, 2869
CseI GACGC 1 cut(s) 2034
Csp6I GTAC 9 cut(s) 66, 235, 570, 638, 1607, 2964, 2988, 3677, 3749
CspCI CAANNNNNGTGG 2 cut(s) 1398, 1433
CviQI GTAC 9 cut(s) 66, 235, 570, 638, 1607, 2964, 2988, 3677, 3749
DriI GACNNNNNGTC 1 cut(s) 2543
Eam1104I CTCTTC 6 cut(s) 480, 735, 827, 949, 1867, 2154
Eam1105I GACNNNNNGTC 1 cut(s) 2543
EarI CTCTTC 6 cut(s) 480, 735, 827, 949, 1867, 2154
Ecl136II GAGCTC 2 cut(s) 581, 2733
Eco130I CCWWGG 3 cut(s) 128, 1088, 3559
Eco24I GRGCYC 2 cut(s) 583, 2735
Eco31I GGTCTC 2 cut(s) 1258, 2377
Eco32I GATATC 1 cut(s) 2122
Eco47I GGWCC 3 cut(s) 185, 361, 2869
Eco53kI GAGCTC 2 cut(s) 581, 2733
Eco57I CTGAAG 2 cut(s) 392, 888
Eco81I CCTNAGG 3 cut(s) 1830, 2424, 2697
Eco88I CYCGRG 2 cut(s) 1620, 1641
EcoICRI GAGCTC 2 cut(s) 581, 2733
EcoNI CCTNNNNNAGG 1 cut(s) 1641
EcoO109I RGGNCCY 1 cut(s) 361
EcoRI GAATTC 1 cut(s) 286
EcoRII CCWGG 4 cut(s) 19, 261, 1375, 2564
EcoRV GATATC 1 cut(s) 2122
EcoT14I CCWWGG 3 cut(s) 128, 1088, 3559
EcoT38I GRGCYC 2 cut(s) 583, 2735
ErhI CCWWGG 3 cut(s) 128, 1088, 3559
FalI AAGNNNNNCTT 6 cut(s) 2108, 2140, 2700, 2732, 3074, 3106
FaqI GGGAC 4 cut(s) 158, 2037, 2882, 3034
FauNDI CATATG 2 cut(s) 566, 2949
FblI GTMKAC 1 cut(s) 1034
FokI GGATG 7 cut(s) 896, 2288, 2648, 2714, 2990, 3053, 3374
FriOI GRGCYC 2 cut(s) 583, 2735
FspI TGCGCA 3 cut(s) 1029, 2451, 3651
GlaI GCGC 4 cut(s) 1029, 2412, 2451, 3651
GsuI CTGGAG 1 cut(s) 1203
HaeIII GGCC 5 cut(s) 18, 645, 1093, 1709, 3440
HapII CCGG 2 cut(s) 1129, 2381
HgaI GACGC 1 cut(s) 2034
HhaI GCGC 4 cut(s) 1030, 2413, 2452, 3652
Hin6I GCGC 4 cut(s) 1028, 2411, 2450, 3650
HinP1I GCGC 4 cut(s) 1028, 2411, 2450, 3650
HincII GTYRAC 6 cut(s) 552, 675, 2615, 2757, 3057, 3528
HindII GTYRAC 6 cut(s) 552, 675, 2615, 2757, 3057, 3528
HindIII AAGCTT 5 cut(s) 225, 2081, 2320, 2591, 3474
HpaI GTTAAC 2 cut(s) 675, 2757
HpaII CCGG 2 cut(s) 1129, 2381
HphI GGTGA 9 cut(s) 35, 182, 677, 1573, 1867, 1946, 2081, 2441, 3596
Hpy99I CGWCG 1 cut(s) 579
HpyCH4III ACNGT 9 cut(s) 239, 672, 679, 1100, 1942, 2941, 3078, 3525, 3727
HpyCH4IV ACGT 6 cut(s) 76, 574, 605, 1284, 1609, 3059
HpyF10VI GCNNNNNNNGC 9 cut(s) 2353, 2357, 2717, 2919, 3425, 3644, 3653, 3662, 3668
HpySE526I ACGT 6 cut(s) 76, 574, 605, 1284, 1609, 3059
HspAI GCGC 4 cut(s) 1028, 2411, 2450, 3650
Kpn2I TCCGGA 1 cut(s) 2380
KspAI GTTAAC 2 cut(s) 675, 2757
LguI GCTCTTC 2 cut(s) 1867, 2154
LmnI GCTCC 5 cut(s) 336, 1184, 1552, 1691, 3449
Lsp1109I GCAGC 9 cut(s) 490, 607, 610, 631, 634, 1169, 3529, 3634, 3674
MaeII ACGT 6 cut(s) 76, 574, 605, 1284, 1609, 3059
MbiI CCGCTC 1 cut(s) 3338
MfeI CAATTG 1 cut(s) 3260
MflI RGATCY 3 cut(s) 724, 1477, 1660
MhlI GDGCHC 2 cut(s) 583, 2735
MlyI GAGTC 9 cut(s) 33, 289, 377, 1027, 1256, 2393, 2620, 2909, 3523
MmeI TCCRAC 4 cut(s) 14, 314, 2200, 2877
MroI TCCGGA 1 cut(s) 2380
MroXI GAANNNNTTC 3 cut(s) 534, 1876, 1941
MslI CAYNNNNRTG 1 cut(s) 1586
MspA1I CMGCKG 1 cut(s) 1160
MspI CCGG 2 cut(s) 1129, 2381
MspR9I CCNGG 5 cut(s) 21, 263, 1130, 1377, 2566
MunI CAATTG 1 cut(s) 3260
Mva1269I GAATGC 1 cut(s) 2446
MvaI CCWGG 4 cut(s) 21, 263, 1377, 2566
MvnI CGCG 1 cut(s) 2413
MwoI GCNNNNNNNGC 9 cut(s) 2353, 2357, 2717, 2919, 3425, 3644, 3653, 3662, 3668
NciI CCSGG 1 cut(s) 1130
NdeI CATATG 2 cut(s) 566, 2949
NheI GCTAGC 1 cut(s) 413
NlaIV GGNNCC 5 cut(s) 260, 362, 537, 644, 2870
NmeAIII GCCGAG 2 cut(s) 1685, 3454
NmuCI GTSAC 5 cut(s) 77, 380, 997, 1579, 2846
NsbI TGCGCA 3 cut(s) 1029, 2451, 3651
NspI RCATGY 6 cut(s) 1810, 2456, 2891, 3428, 3656, 3749
NspV TTCGAA 1 cut(s) 1304
OliI CACNNNNGTG 1 cut(s) 1586
PaeI GCATGC 3 cut(s) 1810, 2456, 3656
PaeR7I CTCGAG 2 cut(s) 1620, 1641
PagI TCATGA 2 cut(s) 688, 1450
PciI ACATGT 1 cut(s) 2887
PciSI GCTCTTC 2 cut(s) 1867, 2154
PctI GAATGC 1 cut(s) 2446
PdmI GAANNNNTTC 3 cut(s) 534, 1876, 1941
PfeI GAWTC 9 cut(s) 119, 453, 464, 1012, 1633, 1985, 2223, 3026, 3120
PleI GAGTC 9 cut(s) 33, 289, 377, 1026, 1255, 2392, 2619, 2908, 3523
PpsI GAGTC 9 cut(s) 33, 289, 377, 1026, 1255, 2392, 2619, 2908, 3523
Ppu21I YACGTR 1 cut(s) 1610
PpuMI RGGWCCY 1 cut(s) 361
PscI ACATGT 1 cut(s) 2887
PshBI ATTAAT 1 cut(s) 1385
Psp124BI GAGCTC 2 cut(s) 583, 2735
Psp1406I AACGTT 1 cut(s) 605
Psp5II RGGWCCY 1 cut(s) 361
Psp6I CCWGG 4 cut(s) 19, 261, 1375, 2564
PspGI CCWGG 4 cut(s) 19, 261, 1375, 2564
PspN4I GGNNCC 5 cut(s) 260, 362, 537, 644, 2870
PspPI GGNCC 5 cut(s) 17, 185, 361, 643, 2869
PspPPI RGGWCCY 1 cut(s) 361
PspXI VCTCGAGB 1 cut(s) 1620
PsrI GAACNNNNNNTAC 4 cut(s) 3462, 3494, 3532, 3564
PstI CTGCAG 1 cut(s) 1159
PstNI CAGNNNCTG 2 cut(s) 727, 1021
PsuI RGATCY 3 cut(s) 724, 1477, 1660
PvuII CAGCTG 1 cut(s) 1160
RsaI GTAC 9 cut(s) 67, 236, 571, 639, 1608, 2965, 2989, 3678, 3750
RsaNI GTAC 9 cut(s) 66, 235, 570, 638, 1607, 2964, 2988, 3677, 3749
RseI CAYNNNNRTG 1 cut(s) 1586
SacI GAGCTC 2 cut(s) 583, 2735
SapI GCTCTTC 2 cut(s) 1867, 2154
Sau96I GGNCC 5 cut(s) 17, 185, 361, 643, 2869
SchI GAGTC 9 cut(s) 33, 289, 377, 1027, 1256, 2393, 2620, 2909, 3523
ScrFI CCNGG 5 cut(s) 21, 263, 1130, 1377, 2566
SduI GDGCHC 2 cut(s) 583, 2735
SfcI CTRYAG 3 cut(s) 779, 1155, 3442
Sfr274I CTCGAG 2 cut(s) 1620, 1641
SfuI TTCGAA 1 cut(s) 1304
SinI GGWCC 3 cut(s) 185, 361, 2869
SlaI CTCGAG 2 cut(s) 1620, 1641
SmiMI CAYNNNNRTG 1 cut(s) 1586
SmlI CTYRAG 5 cut(s) 1620, 1641, 1818, 3046, 3531
SmoI CTYRAG 5 cut(s) 1620, 1641, 1818, 3046, 3531
SpeI ACTAGT 1 cut(s) 179
SphI GCATGC 3 cut(s) 1810, 2456, 3656
SsiI CCGC 2 cut(s) 1051, 3338
SstI GAGCTC 2 cut(s) 583, 2735
StyD4I CCNGG 5 cut(s) 19, 261, 1128, 1375, 2564
StyI CCWWGG 3 cut(s) 128, 1088, 3559
TaaI ACNGT 9 cut(s) 239, 672, 679, 1100, 1942, 2941, 3078, 3525, 3727
TaiI ACGT 6 cut(s) 79, 577, 608, 1287, 1612, 3062
TaqI TCGA 9 cut(s) 577, 681, 1250, 1304, 1498, 1621, 1642, 2046, 2131
TaqII GACCGA 1 cut(s) 2886
TatI WGTACW 2 cut(s) 569, 2963
TauI GCSGC 1 cut(s) 3341
TfiI GAWTC 9 cut(s) 119, 453, 464, 1012, 1633, 1985, 2223, 3026, 3120
TscAI CASTG 7 cut(s) 76, 244, 424, 969, 1006, 2267, 3388
TseFI GTSAC 5 cut(s) 77, 380, 997, 1579, 2846
TseI GCWGC 9 cut(s) 478, 595, 598, 619, 622, 1157, 3517, 3647, 3662
Tsp45I GTSAC 5 cut(s) 77, 380, 997, 1579, 2846
TspGWI ACGGA 2 cut(s) 486, 3148
TspRI CASTG 7 cut(s) 76, 244, 424, 969, 1006, 2267, 3388
VpaK11BI GGWCC 3 cut(s) 185, 361, 2869
VspI ATTAAT 1 cut(s) 1385
XagI CCTNNNNNAGG 1 cut(s) 1641
XbaI TCTAGA 4 cut(s) 583, 2735, 2882, 3194
XceI RCATGY 6 cut(s) 1810, 2456, 2891, 3428, 3656, 3749
XhoI CTCGAG 2 cut(s) 1620, 1641
XmiI GTMKAC 1 cut(s) 1034
XmnI GAANNNNTTC 3 cut(s) 534, 1876, 1941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.