Rmu_co8387085.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8387085.1
OG0012436
Physical Location & Seq
Reverse (-)
46 .. 1074
1029 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8387085.1_g000001.1.cds

Sequence Viewer

Length: 1029 bp
atggatgaggctaaggataatggcttgttgttaggggatcagtctttgagtttcaagaattataaggtgaagtattcggagtgcccgatatgttcatttgctattgccaggtcgattaattcatatacgtcgaggttcttgtttgataactatacgttgattgcaagtgagtatttggattcgaagagattgcatcagatattgtcagactctgctgatgagtttaggagagtggcagggtttcctgaggaggattttggcagggtgcttcctgtgtatgtgtttgatttggactaccacatgctgttgctgctcgataggtatcaccaaactgttgcttttagagatatggtgattgcagtgaggaccaggaacacacagactgtgagtgattatagctgcaatggccgccatgtgtttacacagacgagggagcttgagagaccacttgttggttcgattttacagagtatgtggggagtgtcgccgactcatatgttgtggagccctaggcacaatactacgttggtggattacacgtggagtgttgggcagactccatttgggccgttctcggagatttcatcactatcattcgtacagaaggatgctgctcggagaaatgttcttttgacatcactaaattacagcatatcgagtgctgtagatgttcttgaatccatagctgcacatggtggggagagaaagctcctgaaacgtaatcgacatgttgagttcgtacaaaggtggaatttcttcaagtacaagctggacaaagcagtttctgcaatgtcacatttagactttgagatggctttatactatatgaggtcctcagatcatgatctatatgctatccactctattgtgtatcatgcctcccaggaattggaggcatcccttgtatgtttcaaggatccaccatttccgtggtcttttgtgtttatggttgcagtgcttctccttcttggctattatattagttctagaaaacacaaactattcagaagtaagagtaagcaattttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

342

Amino Acids

39.64

Weight (kDa)

8.51

Isoelectric Point (pI)

47.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012436)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28720 AT3G28720
fragaria_vesca FvH4_6g49180
malus_domestica MD09G1047700.v1.1 MD17G1047800.v1.1
prunus_persica Prupe.3G271300_v2.0.a1
pyrus_communis pycom111g03860 pycom17g04260
rosa_chinensis RchiOBHm_Chr2g0169061
rosa_laevigata RLG00000021830
rosa_multiflora Rmu_co8387085.1_g000001 Rmu_ssc0000393.1_g000028
rosa_roxburghii Rroxscaffold_2G00082500
rosa_rugosa Rorug02G0536600
rosa_samantha Rh2AG608400 Rh2BG621200 Rh2CG590000 Rh2DG631900
rosa_wichuraiana Rw2G050440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 63
AccB7I CCANNNNNTGG 2 cut(s) 452, 889
AciI CCGC 1 cut(s) 409
AclWI GGATC 3 cut(s) 45, 911, 924
AcoI YGGCCR 1 cut(s) 406
AcsI RAATTY 1 cut(s) 751
AcvI CACGTG 1 cut(s) 540
AdeI CACNNNGTG 1 cut(s) 695
AfaI GTAC 3 cut(s) 600, 741, 764
AfiI CCNNNNNNNGG 2 cut(s) 452, 889
AflIII ACRYGT 2 cut(s) 537, 727
AgsI TTSAA 4 cut(s) 55, 677, 760, 913
AjnI CCWGG 3 cut(s) 107, 368, 882
AluBI AGCT 5 cut(s) 399, 436, 686, 709, 769
AluI AGCT 5 cut(s) 399, 436, 686, 709, 769
Alw26I GTCTC 1 cut(s) 436
AlwI GGATC 3 cut(s) 45, 911, 924
AlwNI CAGNNNCTG 2 cut(s) 212, 785
AoxI GGCC 2 cut(s) 406, 566
ApeKI GCWGC 4 cut(s) 310, 399, 611, 686
ApoI RAATTY 1 cut(s) 751
AseI ATTAAT 1 cut(s) 117
Asp700I GAANNNNTTC 1 cut(s) 755
AspA2I CCTAGG 1 cut(s) 509
AspS9I GGNCC 3 cut(s) 366, 566, 831
AsuHPI GGTGA 3 cut(s) 79, 317, 364
AsuII TTCGAA 1 cut(s) 182
AvaII GGWCC 2 cut(s) 366, 831
AvrII CCTAGG 1 cut(s) 509
AxyI CCTNAGG 1 cut(s) 246
BaeGI GKGCMC 1 cut(s) 86
BamHI GGATCC 1 cut(s) 916
BanII GRGCYC 1 cut(s) 509
BbrPI CACGTG 1 cut(s) 540
BbvI GCAGC 4 cut(s) 297, 386, 598, 673
BccI CCATC 1 cut(s) 805
BceAI ACGGC 1 cut(s) 553
BcgI CGANNNNNNTGC 2 cut(s) 172, 206
BciT130I CCWGG 3 cut(s) 109, 370, 884
BcoDI GTCTC 1 cut(s) 436
BfaI CTAG 2 cut(s) 510, 987
BfmI CTRYAG 1 cut(s) 663
BisI GCNGC 5 cut(s) 311, 400, 409, 612, 687
BlnI CCTAGG 1 cut(s) 509
BlsI GCNGC 5 cut(s) 312, 401, 410, 613, 688
Bme1390I CCNGG 3 cut(s) 109, 370, 884
Bme18I GGWCC 2 cut(s) 366, 831
BmgT120I GGNCC 3 cut(s) 366, 566, 831
BmiI GGNNCC 2 cut(s) 506, 918
BmrFI CCNGG 3 cut(s) 109, 370, 884
BmsI GCATC 3 cut(s) 202, 598, 905
Bpu10I CCTNAGC 1 cut(s) 12
Bpu14I TTCGAA 1 cut(s) 182
BpuEI CTTGAG 1 cut(s) 458
BsaAI YACGTR 1 cut(s) 540
BsaBI GATNNNNATC 2 cut(s) 321, 843
BsaI GGTCTC 1 cut(s) 436
BsaJI CCNNGG 3 cut(s) 509, 882, 929
Bsc4I CCNNNNNNNGG 2 cut(s) 452, 889
Bse21I CCTNAGG 1 cut(s) 246
Bse3DI GCAATG 2 cut(s) 409, 795
Bse8I GATNNNNATC 2 cut(s) 321, 843
BseBI CCWGG 3 cut(s) 109, 370, 884
BseDI CCNNGG 3 cut(s) 509, 882, 929
BseGI GGATG 3 cut(s) 10, 613, 896
BseJI GATNNNNATC 2 cut(s) 321, 843
BseLI CCNNNNNNNGG 2 cut(s) 452, 889
BseMI GCAATG 2 cut(s) 409, 795
BseMII CTCAG 2 cut(s) 237, 849
BseRI GAGGAG 1 cut(s) 263
BseSI GKGCMC 1 cut(s) 86
BseXI GCAGC 4 cut(s) 297, 386, 598, 673
BsgI GTGCAG 1 cut(s) 672
BshFI GGCC 2 cut(s) 408, 568
BslI CCNNNNNNNGG 2 cut(s) 452, 889
BsmAI GTCTC 1 cut(s) 436
BsnI GGCC 2 cut(s) 408, 568
Bso31I GGTCTC 1 cut(s) 436
Bsp119I TTCGAA 1 cut(s) 182
Bsp1286I GDGCHC 2 cut(s) 86, 509
Bsp143I GATC 4 cut(s) 37, 838, 844, 916
BspACI CCGC 1 cut(s) 409
BspANI GGCC 2 cut(s) 408, 568
BspCNI CTCAG 2 cut(s) 238, 848
BspHI TCATGA 1 cut(s) 841
BspLI GGNNCC 2 cut(s) 506, 918
BspPI GGATC 3 cut(s) 45, 911, 924
BspT104I TTCGAA 1 cut(s) 182
BspTNI GGTCTC 1 cut(s) 436
BsrDI GCAATG 2 cut(s) 409, 795
BssECI CCNNGG 3 cut(s) 509, 882, 929
BssMI GATC 4 cut(s) 37, 838, 844, 916
BssT1I CCWWGG 1 cut(s) 509
Bst2UI CCWGG 3 cut(s) 109, 370, 884
Bst4CI ACNGT 2 cut(s) 334, 385
Bst6I CTCTTC 1 cut(s) 179
BstAPI GCANNNNNTGC 1 cut(s) 785
BstBAI YACGTR 1 cut(s) 540
BstBI TTCGAA 1 cut(s) 182
BstDEI CTNAG 3 cut(s) 12, 246, 835
BstDSI CCRYGG 1 cut(s) 929
BstF5I GGATG 3 cut(s) 10, 613, 896
BstKTI GATC 4 cut(s) 40, 841, 847, 919
BstMAI GTCTC 1 cut(s) 436
BstMBI GATC 4 cut(s) 37, 838, 844, 916
BstMWI GCNNNNNNNGC 4 cut(s) 310, 405, 408, 785
BstNI CCWGG 3 cut(s) 109, 370, 884
BstNSI RCATGY 2 cut(s) 304, 731
BstSCI CCNGG 3 cut(s) 107, 368, 882
BstSFI CTRYAG 1 cut(s) 663
BstSLI GKGCMC 1 cut(s) 86
BstV1I GCAGC 4 cut(s) 297, 386, 598, 673
BstX2I RGATCY 1 cut(s) 916
BstXI CCANNNNNNTGG 1 cut(s) 930
BstYI RGATCY 1 cut(s) 916
Bsu36I CCTNAGG 1 cut(s) 246
BsuRI GGCC 2 cut(s) 408, 568
BtgI CCRYGG 1 cut(s) 929
BtsCI GGATG 3 cut(s) 10, 613, 896
BtsI GCAGTG 2 cut(s) 366, 960
BtsIMutI CAGTG 2 cut(s) 366, 960
CaiI CAGNNNCTG 2 cut(s) 212, 785
CciI TCATGA 1 cut(s) 841
Cfr13I GGNCC 3 cut(s) 366, 566, 831
Csp6I GTAC 3 cut(s) 599, 740, 763
CviAII CATG 6 cut(s) 301, 413, 692, 728, 842, 875
CviQI GTAC 3 cut(s) 599, 740, 763
DdeI CTNAG 3 cut(s) 12, 246, 835
DpnI GATC 4 cut(s) 39, 840, 846, 918
DpnII GATC 4 cut(s) 37, 838, 844, 916
DraIII CACNNNGTG 1 cut(s) 695
EaeI YGGCCR 1 cut(s) 406
Eam1104I CTCTTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 179
Eco130I CCWWGG 1 cut(s) 509
Eco24I GRGCYC 1 cut(s) 509
Eco31I GGTCTC 1 cut(s) 436
Eco47I GGWCC 2 cut(s) 366, 831
Eco72I CACGTG 1 cut(s) 540
Eco81I CCTNAGG 1 cut(s) 246
EcoO109I RGGNCCY 1 cut(s) 831
EcoRII CCWGG 3 cut(s) 107, 368, 882
EcoT14I CCWWGG 1 cut(s) 509
EcoT38I GRGCYC 1 cut(s) 509
ErhI CCWWGG 1 cut(s) 509
FaeI CATG 6 cut(s) 304, 416, 695, 731, 845, 878
FatI CATG 6 cut(s) 300, 412, 691, 727, 841, 874
FauNDI CATATG 1 cut(s) 495
Fnu4HI GCNGC 5 cut(s) 311, 400, 409, 612, 687
FokI GGATG 3 cut(s) 17, 620, 883
FriOI GRGCYC 1 cut(s) 509
Fsp4HI GCNGC 5 cut(s) 311, 400, 409, 612, 687
FspBI CTAG 2 cut(s) 510, 987
GluI GCNGC 5 cut(s) 311, 400, 409, 612, 687
HaeIII GGCC 2 cut(s) 408, 568
Hin1II CATG 6 cut(s) 304, 416, 695, 731, 845, 878
HinfI GANTC 5 cut(s) 179, 209, 490, 556, 677
HphI GGTGA 3 cut(s) 79, 317, 364
Hpy166II GTNNAC 1 cut(s) 420
Hpy188I TCNGA 7 cut(s) 79, 198, 208, 577, 618, 838, 1007
Hpy188III TCNNGA 6 cut(s) 55, 245, 674, 712, 842, 987
Hpy8I GTNNAC 1 cut(s) 420
Hpy99I CGWCG 1 cut(s) 133
HpyAV CCTTC 2 cut(s) 598, 974
HpyCH4III ACNGT 2 cut(s) 334, 385
HpyCH4IV ACGT 5 cut(s) 128, 155, 524, 539, 718
HpyCH4V TGCA 7 cut(s) 164, 193, 359, 402, 689, 788, 953
HpyF10VI GCNNNNNNNGC 4 cut(s) 310, 405, 408, 785
HpyF3I CTNAG 3 cut(s) 12, 246, 835
HpySE526I ACGT 5 cut(s) 128, 155, 524, 539, 718
Hsp92II CATG 6 cut(s) 304, 416, 695, 731, 845, 878
Kzo9I GATC 4 cut(s) 37, 838, 844, 916
LmnI GCTCC 3 cut(s) 433, 504, 714
Lsp1109I GCAGC 4 cut(s) 297, 386, 598, 673
LweI GCATC 3 cut(s) 202, 598, 905
MaeI CTAG 2 cut(s) 510, 987
MaeII ACGT 5 cut(s) 128, 155, 524, 539, 718
MaeIII GTNAC 1 cut(s) 792
MalI GATC 4 cut(s) 39, 840, 846, 918
MboI GATC 4 cut(s) 37, 838, 844, 916
MboII GAAGA 2 cut(s) 196, 748
MflI RGATCY 1 cut(s) 916
MhlI GDGCHC 2 cut(s) 86, 509
MluCI AATT 6 cut(s) 58, 118, 643, 751, 887, 1022
MlyI GAGTC 3 cut(s) 203, 484, 550
MnlI CCTC 9 cut(s) 126, 241, 244, 357, 423, 822, 844, 886, 889
MroXI GAANNNNTTC 1 cut(s) 755
MseI TTAA 1 cut(s) 117
MslI CAYNNNNRTG 1 cut(s) 928
MspR9I CCNGG 3 cut(s) 109, 370, 884
MvaI CCWGG 3 cut(s) 109, 370, 884
MwoI GCNNNNNNNGC 4 cut(s) 310, 405, 408, 785
NdeI CATATG 1 cut(s) 495
NdeII GATC 4 cut(s) 37, 838, 844, 916
NlaIII CATG 6 cut(s) 304, 416, 695, 731, 845, 878
NlaIV GGNNCC 2 cut(s) 506, 918
NmuCI GTSAC 1 cut(s) 792
NspI RCATGY 2 cut(s) 304, 731
NspV TTCGAA 1 cut(s) 182
PagI TCATGA 1 cut(s) 841
PciI ACATGT 1 cut(s) 727
PcsI WCGNNNNNNNCGW 1 cut(s) 83
PdmI GAANNNNTTC 1 cut(s) 755
PfeI GAWTC 2 cut(s) 179, 677
PflMI CCANNNNNTGG 2 cut(s) 452, 889
PkrI GCNGC 5 cut(s) 312, 401, 410, 613, 688
PleI GAGTC 3 cut(s) 203, 484, 550
PmaCI CACGTG 1 cut(s) 540
PmlI CACGTG 1 cut(s) 540
PpsI GAGTC 3 cut(s) 203, 484, 550
Ppu21I YACGTR 1 cut(s) 540
PpuMI RGGWCCY 1 cut(s) 831
PscI ACATGT 1 cut(s) 727
PshBI ATTAAT 1 cut(s) 117
PsiI TTATAA 1 cut(s) 63
Psp5II RGGWCCY 1 cut(s) 831
Psp6I CCWGG 3 cut(s) 107, 368, 882
PspCI CACGTG 1 cut(s) 540
PspGI CCWGG 3 cut(s) 107, 368, 882
PspN4I GGNNCC 2 cut(s) 506, 918
PspPI GGNCC 3 cut(s) 366, 566, 831
PspPPI RGGWCCY 1 cut(s) 831
PstNI CAGNNNCTG 2 cut(s) 212, 785
PsuI RGATCY 1 cut(s) 916
RsaI GTAC 3 cut(s) 600, 741, 764
RsaNI GTAC 3 cut(s) 599, 740, 763
RseI CAYNNNNRTG 1 cut(s) 928
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 5 cut(s) 311, 400, 409, 612, 687
Sau3AI GATC 4 cut(s) 37, 838, 844, 916
Sau96I GGNCC 3 cut(s) 366, 566, 831
SchI GAGTC 3 cut(s) 203, 484, 550
ScrFI CCNGG 3 cut(s) 109, 370, 884
SduI GDGCHC 2 cut(s) 86, 509
SfaNI GCATC 3 cut(s) 202, 598, 905
SfcI CTRYAG 1 cut(s) 663
SfuI TTCGAA 1 cut(s) 182
SinI GGWCC 2 cut(s) 366, 831
SmiMI CAYNNNNRTG 1 cut(s) 928
SmlI CTYRAG 1 cut(s) 437
SmoI CTYRAG 1 cut(s) 437
Sse9I AATT 6 cut(s) 58, 118, 643, 751, 887, 1022
SsiI CCGC 1 cut(s) 409
SspMI CTAG 2 cut(s) 510, 987
StyD4I CCNGG 3 cut(s) 107, 368, 882
StyI CCWWGG 1 cut(s) 509
TaaI ACNGT 2 cut(s) 334, 385
TaiI ACGT 5 cut(s) 131, 158, 527, 542, 721
TaqI TCGA 7 cut(s) 113, 131, 182, 315, 458, 656, 724
TasI AATT 6 cut(s) 58, 118, 643, 751, 887, 1022
TatI WGTACW 1 cut(s) 762
TauI GCSGC 1 cut(s) 411
TfiI GAWTC 2 cut(s) 179, 677
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TscAI CASTG 2 cut(s) 366, 960
TseFI GTSAC 1 cut(s) 792
TseI GCWGC 4 cut(s) 310, 399, 611, 686
Tsp45I GTSAC 1 cut(s) 792
TspDTI ATGAA 3 cut(s) 84, 111, 573
TspGWI ACGGA 1 cut(s) 918
TspRI CASTG 2 cut(s) 366, 960
Van91I CCANNNNNTGG 2 cut(s) 452, 889
VpaK11BI GGWCC 2 cut(s) 366, 831
VspI ATTAAT 1 cut(s) 117
XapI RAATTY 1 cut(s) 751
XbaI TCTAGA 1 cut(s) 986
XceI RCATGY 2 cut(s) 304, 731
XcmI CCANNNNNNNNNTGG 1 cut(s) 927
XmaJI CCTAGG 1 cut(s) 509
XmnI GAANNNNTTC 1 cut(s) 755
XspI CTAG 2 cut(s) 510, 987
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.