Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000679

Physical Location & Seq

Genomic Coordinates Forward (+)

66638547 .. 66643116

Gene Structure 4570 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0536600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCAGAGCTGGCTGCTCGGAAACATGTTCAATTCATTCTATCGAAAGCAAAGGAAAAGGATTCTTATGAATCAGTTCTGATGGAGCATATAAGATTGAATGGGGCATATTGGGGTTTGACCACTCTTGATCTTCTTGGAAAGCTTGATACTGTCGATGTCAATGAAGTTGTTTCAGAGGTCCTCCAGTGCCAGCATGAATCAGGTGGTTTTGGTGGTAACATTGGACATGACCCACACATACTTTATACCCTAAGTGCCGTGCAGGTTTTGGCCTTATGTGACAAGGTTGATGTTTTGGATACCGAAAAGGTTGCAAATTATATAGCTGGGCTGCAAAATGAAGATGGCTCTTTTTCAGGGGACATGTGGGGTGAAGTTGATACGCGGTTTTCGTATATTGCTATCTGTTGTCTAGCATTACTACATCATTTGGATAAAATTAATGTGGAGAAGGCTGTATACTACATATTAAGTTGTAAAAATCACGATGGCGGATTTGGATGCACGCCTGGTGGAGAGTCTCATGCTGGTCAAATTTTTTGTTGTGTGGGTGCTCTAGCTATCACGGGGTCTCTACATCGTATTGACAAGGACCTTCTTGGATGGTGGTTATGTGAGCGGCAAGTGAAAGCAGGAGGTCTTAATGGCCGTCCTGAGAAGCTTCCTGATGTGTGCTACTCATGGTGGGTTCTATCTAGTTTGATCATGATTGACAGAGTTCACTGGATCAATAAGGAAAAGCTTGCCAAGTTCATTTTAGACTGTCAGGACATTGAAAATGGAGGAATTTCAGACAGACCAGATGATGCATGTGATGCCTATCATACCTACTTTGGTGTAGCAGGGCTTTCCCTCCTTGAGTATCCAGGGGTGAAACCCATAGATCCAGCTTATGCTCTGCCAGTTGATGTTGTAAATAGGATTATCTTAGGCATAAAGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006109 GO:0006110 GO:0006140 GO:0006355 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019220 GO:0019222 GO:0019432 GO:0030808 GO:0030811 GO:0031323 GO:0031326 GO:0031329 GO:0034285 GO:0042221 GO:0042325 GO:0043467 GO:0043470 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0048518 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051193 GO:0051196 GO:0051252 GO:0060255 GO:0062012 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900371 GO:1900542 GO:1901363 GO:1901576 GO:1901700 GO:1901957 GO:1901959 GO:1903506 GO:1903578 GO:2000112 GO:2001141 GO:2001169

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

315

Amino Acids

34.75

Weight (kDa)

5.12

Isoelectric Point (pI)

26.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	4 - 300	1.3e-102	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28880
fragaria_vesca	FvH4_1g02370 FvH4_1g02370 FvH4_6g48800 FvH4_6g48800 FvH4_6g48800 FvH4_6g49030 FvH4_6g49030 FvH4_6g49030
malus_domestica	MD09G1050300.v1.1
prunus_persica	Prupe.3G268600_v2.0.a1 Prupe.3G268600_v2.0.a1 Prupe.3G268600_v2.0.a1 Prupe.3G268600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0168671 RchiOBHm_Chr2g0169051 RchiOBHm_Chr2g0170061 RchiOBHm_Chr2g0170071 RchiOBHm_Chr6g0246231 RchiOBHm_Chr6g0246241
rosa_laevigata	RLG00000015269 RLG00000021799 RLG00000021800 RLG00000021827 RLG00000021828 RLG00000035229
rosa_multiflora	Rmu_sc0002416.1_g000001 Rmu_sc0009451.1_g000006 Rmu_sc0013078.1_g000013 Rmu_sc0032865.1_g000001 Rmu_ssc0000393.1_g000027
rosa_roxburghii	Rroxscaffold_2G00081630 Rroxscaffold_2G00082770 Rroxscaffold_7G00214740
rosa_rugosa	Rorug02G0534500 Rorug02G0536600 Rorug02G0545500 Rorug02G0545500 Rorug05G0519700 Rorug05G0519800
rosa_samantha	Rh2AG605400 Rh2AG608100 Rh2AG608200 Rh2AG617600 Rh2BG618300 Rh2BG620800 Rh2BG621000 Rh2BG621100 Rh2BG629100 Rh2CG586500 Rh2CG589800 Rh2CG589900 Rh2CG598400 Rh2DG628900 Rh2DG631400 Rh2DG631600 Rh2DG631700 Rh2DG640900 Rh5AG381700 Rh5BG393400 Rh5BG393500 Rh5CG417500 Rh6AG033900 Rh6BG029100 Rh6CG029300 Rh6CG029400 Rh6CG029500 Rh6CG220500 Rh6DG028400 Rh6DG028500
rosa_wichuraiana	Rw0G009340 Rw2G050180 Rw2G050430 Rw2G051130 Rw6G002900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	256
AccBSI	CCGCTC	1 cut(s)	622
AccI	GTMKAC	1 cut(s)	462
AccII	CGCG	1 cut(s)	388
AciI	CCGC	3 cut(s)	388, 495, 622
AclWI	GGATC	2 cut(s)	737, 881
AcoI	YGGCCR	1 cut(s)	649
AcsI	RAATTY	2 cut(s)	537, 789
AflIII	ACRYGT	2 cut(s)	25, 366
AgsI	TTSAA	3 cut(s)	32, 100, 779
AjnI	CCWGG	2 cut(s)	511, 868
AluBI	AGCT	7 cut(s)	10, 145, 329, 563, 664, 745, 893
AluI	AGCT	7 cut(s)	10, 145, 329, 563, 664, 745, 893
Alw21I	GWGCWC	1 cut(s)	559
Alw26I	GTCTC	2 cut(s)	528, 579
AlwI	GGATC	2 cut(s)	737, 881
AoxI	GGCC	2 cut(s)	273, 649
ApeKI	GCWGC	2 cut(s)	14, 334
ApoI	RAATTY	2 cut(s)	537, 789
AseI	ATTAAT	1 cut(s)	444
Asp700I	GAANNNNTTC	1 cut(s)	75
AspS9I	GGNCC	2 cut(s)	181, 595
AsuHPI	GGTGA	2 cut(s)	386, 886
AvaII	GGWCC	2 cut(s)	181, 595
BarI	GAAGNNNNNNTAC	2 cut(s)	446, 478
Bbv12I	GWGCWC	1 cut(s)	559
BbvI	GCAGC	1 cut(s)	321
BccI	CCATC	4 cut(s)	76, 341, 485, 600
BceAI	ACGGC	2 cut(s)	245, 636
BcgI	CGANNNNNNTGC	2 cut(s)	296, 330
BciT130I	CCWGG	2 cut(s)	513, 870
BciVI	GTATCC	2 cut(s)	295, 876
BclI	TGATCA	1 cut(s)	705
BcoDI	GTCTC	2 cut(s)	528, 579
BfaI	CTAG	3 cut(s)	416, 560, 699
BfuAI	ACCTGC	1 cut(s)	256
BfuI	GTATCC	2 cut(s)	295, 876
BisI	GCNGC	3 cut(s)	15, 335, 623
BlsI	GCNGC	3 cut(s)	16, 336, 624
Bme1390I	CCNGG	2 cut(s)	513, 870
Bme18I	GGWCC	2 cut(s)	181, 595
BmgT120I	GGNCC	2 cut(s)	181, 595
BmrFI	CCNGG	2 cut(s)	513, 870
BmsI	GCATC	3 cut(s)	494, 799, 808
BpmI	CTGGAG	1 cut(s)	170
BpuEI	CTTGAG	1 cut(s)	881
BsaBI	GATNNNNATC	1 cut(s)	822
BsaI	GGTCTC	1 cut(s)	579
BsaJI	CCNNGG	1 cut(s)	869
Bse1I	ACTGG	3 cut(s)	187, 731, 905
Bse8I	GATNNNNATC	1 cut(s)	822
BseBI	CCWGG	2 cut(s)	513, 870
BseDI	CCNNGG	1 cut(s)	869
BseGI	GGATG	2 cut(s)	509, 611
BseJI	GATNNNNATC	1 cut(s)	822
BseMII	CTCAG	1 cut(s)	648
BseNI	ACTGG	3 cut(s)	187, 731, 905
BseXI	GCAGC	1 cut(s)	321
BseYI	CCCAGC	1 cut(s)	329
BsgI	GTGCAG	1 cut(s)	284
Bsh1236I	CGCG	1 cut(s)	388
BshFI	GGCC	2 cut(s)	275, 651
BsiHKAI	GWGCWC	1 cut(s)	559
BslFI	GGGAC	1 cut(s)	377
BsmAI	GTCTC	2 cut(s)	528, 579
BsmFI	GGGAC	1 cut(s)	377
BsnI	GGCC	2 cut(s)	275, 651
Bso31I	GGTCTC	1 cut(s)	579
Bsp1286I	GDGCHC	1 cut(s)	559
Bsp143I	GATC	4 cut(s)	130, 705, 729, 886
BspACI	CCGC	3 cut(s)	388, 495, 622
BspANI	GGCC	2 cut(s)	275, 651
BspCNI	CTCAG	1 cut(s)	649
BspFNI	CGCG	1 cut(s)	388
BspHI	TCATGA	1 cut(s)	708
BspMI	ACCTGC	1 cut(s)	256
BspPI	GGATC	2 cut(s)	737, 881
BspTNI	GGTCTC	1 cut(s)	579
BsrBI	CCGCTC	1 cut(s)	622
BsrI	ACTGG	3 cut(s)	187, 731, 905
BssECI	CCNNGG	1 cut(s)	869
BssMI	GATC	4 cut(s)	130, 705, 729, 886
BssNAI	GTATAC	1 cut(s)	463
Bst1107I	GTATAC	1 cut(s)	463
Bst2UI	CCWGG	2 cut(s)	513, 870
Bst4CI	ACNGT	2 cut(s)	154, 767
BstAPI	GCANNNNNTGC	1 cut(s)	818
BstC8I	GCNNGC	4 cut(s)	12, 194, 509, 747
BstDEI	CTNAG	3 cut(s)	254, 657, 931
BstF5I	GGATG	2 cut(s)	509, 611
BstFNI	CGCG	1 cut(s)	388
BstKTI	GATC	4 cut(s)	133, 708, 732, 889
BstMAI	GTCTC	2 cut(s)	528, 579
BstMBI	GATC	4 cut(s)	130, 705, 729, 886
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 818
BstNI	CCWGG	2 cut(s)	513, 870
BstNSI	RCATGY	3 cut(s)	29, 370, 816
BstSCI	CCNGG	2 cut(s)	511, 868
BstUI	CGCG	1 cut(s)	388
BstV1I	GCAGC	1 cut(s)	321
BstX2I	RGATCY	1 cut(s)	886
BstYI	RGATCY	1 cut(s)	886
BstZ17I	GTATAC	1 cut(s)	463
BsuI	GTATCC	2 cut(s)	295, 876
BsuRI	GGCC	2 cut(s)	275, 651
BtsCI	GGATG	2 cut(s)	509, 611
BtsIMutI	CAGTG	2 cut(s)	194, 724
BveI	ACCTGC	1 cut(s)	256
Cac8I	GCNNGC	4 cut(s)	12, 194, 509, 747
CciI	TCATGA	1 cut(s)	708
Cfr13I	GGNCC	2 cut(s)	181, 595
CviAII	CATG	8 cut(s)	26, 197, 230, 367, 527, 684, 709, 813
DdeI	CTNAG	3 cut(s)	254, 657, 931
DpnI	GATC	4 cut(s)	132, 707, 731, 888
DpnII	GATC	4 cut(s)	130, 705, 729, 886
EaeI	YGGCCR	1 cut(s)	649
EciI	GGCGGA	1 cut(s)	510
Eco31I	GGTCTC	1 cut(s)	579
Eco47I	GGWCC	2 cut(s)	181, 595
EcoO109I	RGGNCCY	2 cut(s)	181, 595
EcoRII	CCWGG	2 cut(s)	511, 868
EcoT22I	ATGCAT	1 cut(s)	814
FaeI	CATG	8 cut(s)	29, 200, 233, 370, 530, 687, 712, 816
FaqI	GGGAC	1 cut(s)	377
FatI	CATG	8 cut(s)	25, 196, 229, 366, 526, 683, 708, 812
FbaI	TGATCA	1 cut(s)	705
FblI	GTMKAC	1 cut(s)	462
Fnu4HI	GCNGC	3 cut(s)	15, 335, 623
FokI	GGATG	2 cut(s)	516, 618
Fsp4HI	GCNGC	3 cut(s)	15, 335, 623
FspBI	CTAG	3 cut(s)	416, 560, 699
GluI	GCNGC	3 cut(s)	15, 335, 623
GsaI	CCCAGC	1 cut(s)	333
GsuI	CTGGAG	1 cut(s)	170
HaeIII	GGCC	2 cut(s)	275, 651
Hin1II	CATG	8 cut(s)	29, 200, 233, 370, 530, 687, 712, 816
HindIII	AAGCTT	3 cut(s)	143, 662, 743
HinfI	GANTC	4 cut(s)	62, 71, 200, 521
HphI	GGTGA	2 cut(s)	386, 886
Hpy166II	GTNNAC	2 cut(s)	463, 724
Hpy188I	TCNGA	4 cut(s)	21, 81, 178, 796
Hpy188III	TCNNGA	6 cut(s)	128, 488, 656, 668, 709, 770
Hpy8I	GTNNAC	2 cut(s)	463, 724
HpyAV	CCTTC	2 cut(s)	448, 608
HpyCH4III	ACNGT	2 cut(s)	154, 767
HpyCH4V	TGCA	5 cut(s)	265, 317, 337, 507, 812
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 818
HpyF3I	CTNAG	3 cut(s)	254, 657, 931
Hsp92II	CATG	8 cut(s)	29, 200, 233, 370, 530, 687, 712, 816
Ksp22I	TGATCA	1 cut(s)	705
Kzo9I	GATC	4 cut(s)	130, 705, 729, 886
LmnI	GCTCC	1 cut(s)	85
Lsp1109I	GCAGC	1 cut(s)	321
LweI	GCATC	3 cut(s)	494, 799, 808
MaeI	CTAG	3 cut(s)	416, 560, 699
MaeIII	GTNAC	2 cut(s)	218, 281
MalI	GATC	4 cut(s)	132, 707, 731, 888
MbiI	CCGCTC	1 cut(s)	622
MboI	GATC	4 cut(s)	130, 705, 729, 886
MboII	GAAGA	2 cut(s)	125, 356
MflI	RGATCY	1 cut(s)	886
MhlI	GDGCHC	1 cut(s)	559
MluCI	AATT	5 cut(s)	32, 319, 441, 537, 789
MlyI	GAGTC	1 cut(s)	530
MnlI	CCTC	5 cut(s)	172, 194, 632, 779, 866
Mph1103I	ATGCAT	1 cut(s)	814
MroXI	GAANNNNTTC	1 cut(s)	75
MseI	TTAA	3 cut(s)	444, 473, 645
MspR9I	CCNGG	2 cut(s)	513, 870
MvaI	CCWGG	2 cut(s)	513, 870
MvnI	CGCG	1 cut(s)	388
MwoI	GCNNNNNNNGC	2 cut(s)	11, 818
NdeII	GATC	4 cut(s)	130, 705, 729, 886
NlaIII	CATG	8 cut(s)	29, 200, 233, 370, 530, 687, 712, 816
NmuCI	GTSAC	1 cut(s)	281
NsiI	ATGCAT	1 cut(s)	814
NspI	RCATGY	3 cut(s)	29, 370, 816
PagI	TCATGA	1 cut(s)	708
PciI	ACATGT	2 cut(s)	25, 366
PcsI	WCGNNNNNNNCGW	1 cut(s)	392
PdmI	GAANNNNTTC	1 cut(s)	75
PfeI	GAWTC	3 cut(s)	62, 71, 200
PkrI	GCNGC	3 cut(s)	16, 336, 624
PleI	GAGTC	1 cut(s)	529
PpsI	GAGTC	1 cut(s)	529
PpuMI	RGGWCCY	2 cut(s)	181, 595
PscI	ACATGT	2 cut(s)	25, 366
PshBI	ATTAAT	1 cut(s)	444
Psp5II	RGGWCCY	2 cut(s)	181, 595
Psp6I	CCWGG	2 cut(s)	511, 868
PspFI	CCCAGC	1 cut(s)	329
PspGI	CCWGG	2 cut(s)	511, 868
PspPI	GGNCC	2 cut(s)	181, 595
PspPPI	RGGWCCY	2 cut(s)	181, 595
PsuI	RGATCY	1 cut(s)	886
SaqAI	TTAA	3 cut(s)	444, 473, 645
SatI	GCNGC	3 cut(s)	15, 335, 623
Sau3AI	GATC	4 cut(s)	130, 705, 729, 886
Sau96I	GGNCC	2 cut(s)	181, 595
SchI	GAGTC	1 cut(s)	530
ScrFI	CCNGG	2 cut(s)	513, 870
SduI	GDGCHC	1 cut(s)	559
SfaNI	GCATC	3 cut(s)	494, 799, 808
SinI	GGWCC	2 cut(s)	181, 595
SmlI	CTYRAG	1 cut(s)	860
SmoI	CTYRAG	1 cut(s)	860
Sse9I	AATT	5 cut(s)	32, 319, 441, 537, 789
SsiI	CCGC	3 cut(s)	388, 495, 622
SspMI	CTAG	3 cut(s)	416, 560, 699
StyD4I	CCNGG	2 cut(s)	511, 868
TaaI	ACNGT	2 cut(s)	154, 767
TaqI	TCGA	2 cut(s)	44, 156
TasI	AATT	5 cut(s)	32, 319, 441, 537, 789
TauI	GCSGC	1 cut(s)	625
TfiI	GAWTC	3 cut(s)	62, 71, 200
Tru1I	TTAA	3 cut(s)	444, 473, 645
Tru9I	TTAA	3 cut(s)	444, 473, 645
TscAI	CASTG	2 cut(s)	194, 731
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	2 cut(s)	14, 334
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	6 cut(s)	25, 84, 180, 213, 357, 745
TspRI	CASTG	2 cut(s)	194, 731
VpaK11BI	GGWCC	2 cut(s)	181, 595
VspI	ATTAAT	1 cut(s)	444
XapI	RAATTY	2 cut(s)	537, 789
XceI	RCATGY	3 cut(s)	29, 370, 816
XmiI	GTMKAC	1 cut(s)	462
XmnI	GAANNNNTTC	1 cut(s)	75
XspI	CTAG	3 cut(s)	416, 560, 699
Zsp2I	ATGCAT	1 cut(s)	814

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.