Rh6BG029100

OST-HTH/LOTUS domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
4354668 .. 4367284
12617 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG029100.1

Sequence Viewer

Length: 3144 bp
ATGGTTCCGGAGCTGTCCGAGTCAGATCCGAGTTCCGCCTGTGACCTCCGACACGAGGCGAGTGAAGACCCAATCGACTCGGTCGAGGCCGAGACGAGTCTGATCAATGCCGTCTACCTCGACAGCAAGGCCGAGCTCGTGGCTCAGTCGAAGCGACTCGGCGGCCGGGCGTTAGACCTAGCGACCGCGTCGAAGCTCCTGCATCTCTGCTGCAACTTTGACTCGGTAGAGTGCGCCTCGGCGCTTCTCGGCGGACAGCTCGGAGCGACACCACTCGTGAACGAGTTAGACGAGGCCGGGAAAACGCCGCTACACACGGCGGTGGAGTCTCACGCGTTGCGGTGCGTGGAGGCGTTGCTGAAGAAACACGCTCGTACGGACCTGAGGACGAAGGACGGTGAGGCACAGCTACCGTTGGAGTTGTCGCTTACTGAGGCAAGTATTATATTGCTTCTTCTAGAGCATGGTGCTCTCGTAAGGCAAAGGAATAAAATGGGGTTGACAGCATTTCATATTGCTGCTGGTAATGGTAATTCAAAGGCCCTTGAGATCCTTCTGTTGGAAGACCCGTTAGCTGTCCAATATATGACGGAAATGAAAGAAACCCCCCTCTTTTTCGCTGTGAAGAATGGGAGTAAAGACTGCACTGAGCTTCTTTTAACATGGGGAGCAAATAGTGAAGTCCTTAACGTGCGTGGGCAAAAAGCTATAGACCTGGCAACCTCTCAAGATATGCGTGACATACTGCTGAACATAACCACTGTTAGCCTCGTTAATCAGGCCTTCCCCAATCAACATAAATGTACTGCCTTAGAGGTGACAGATGAAGACACCACTACTGAAAGAAATGTTAACTCAATCACCAAGGAAGAAGCTTGTAAGTACTTTGAATCTCATCAAGGATATGTCAGAGGAGTTCAGGATGGAGCATACCAGAGTCATTCTTATGCTGCGAAACAACTCAAACGCAAAATCTTTGTTGGAGGACTTCCTCCTTCAGTGGACTCTGATGTTTTGGGAAAGTTCTTTGAAGAGTTTGGATCAGTGGAAGATGCTGTAGTTATTGTAACTCAGATAGAAAAGAAGATACAATCTCGAGGCTTTGGTTTTGTCACATTTAGAGAGGAGAAATCTGCTTTAGAAGCCATGCAAGCGAACTACGTCACCATGAGAGGCAAGAAAGTTGAAATAAAAAGTTTGATTCCAAAATTGGTTTTCAGAGCTGAGTTTGAGAAAATGTCACCTCAACAACGAGAACAAGATAAAGATTTTCAACTTCCACTGCAGAAGTCGAACGAGTATATTAGGGAAGGTGATAACCCTGAACAAGGTTCTTGCGCTGATAGATTAGTCCTTGGACAACCAGCGACATGTTCCATTGAACATCAAGCTCATGTGACCAAGAGCTCTGAGGACCCAAGCACTCCTACATGGCTAAAGGTTTTCAAGAAGCGGTTTCCTGGGTTCTTACAAGGTCTCCTGAAGCACTCAAAGTATGCTCTCTCTTCTCTAAAAGCTGATTTCAGGGCTAAATTTGGGTTAGAACTGGATCATTCATCTGTGGGCTACTCTAAGCTCAGTGACTTCCTGAAATGTTTCTCCAATTTATGTACCATTGAGATTCTCTCCATATGCAAACGTAGACCACCTAGTCACATGATCGTCCGGCCAAATTTTTTTAGGCCTCCACGCCGACTCCTTCATACACTCAGAACACCTCATACTCTGTCATTTTTTGCATTGATTGAGAATGGTGGTGATTCAAAGTGTCTTTCAGACCTCTCAATGGGCATTGGTGGTGAATATTCAAAATGTCTTCAGGATCATTCAAAGTGTTTTCATGACCATTCAGTTGCCGATAGTACTGATTCAAAGTGTCTTCAGAATCTTTCAATTGCAGCCGGTAGTGATACAAATTGTCGTCAGGAACTTTCAGCTGACAATGCTGCTGATTCAAGGTGTGGCTTAAATGTCACTAGCTATGGGGAAGAGAAATCATCCTTTGGGTACACTAAAGTGAAGAACTCAAGGTTCCTTCAATTCTTGAAGCCAGATCCTGTACTCCATGGTCCGATTTATCAGGAGAAGCTACATAGAGAGACTAAAGGGACTACTATTATTGCTTGGGTTTTAGACCAAGCACCTGCTGTAATGGCTGGTTTTGATTCCAGGATCATTAAGCATGATGAACTAGTTTCAGATACATCGAAAAAATTTGAAATCATTAGTCCAAAGATACTCGCATTAGGTGCAGGAAGCTATTATGATATTAAGAAGACATTTAATATTATGAAGTACTGCATTCCAAACAAGATTATGAGACATCCTGAAGTCATATTTAAGCTAGGAGAGTATGCTCGTGATAGGCCCGTGAGAAAGAATGTTGATTTGTATACCTGTTTTATTCTTGGTGTGCAGTCTGAGGAACCAACCCTTTATCGACTTGACAGTGACCTTGATCCTCCTTTAGAGAAATGTGATGGTGTAGAATTAAGTGGCACCGGGGATCTAGCGGCTTATGAAGCATTGACAGAAGAAACGGAGGAACCTGTGGAAGGTTTTCATGTAGAAGACACACATAGAAAAGTTAAATATGCATTTCTTAAGGCAGCTCTAACCGATCCCTCTACCGGTGGTATTATAACTGTGGCATATATTGATGATGATGGAATGGAAAGAATGTCCAGCAATACGGTTGTAGAATTGTATATACAATTCTATGACAAGTTCCGTTATCTTGAAGACCGAATTGTGTTTCTATTTTATGATAATGTTCAAAAGAAAAAGCTTCCGTCATTTCTTGGAAAGAAAATCAATGCAAATGCTGTTGAAGAAGTTGGTCATCCTCTGACGCAGTTACATGGAGGGGAAGTTTGGCTAGAAACAGATGATGAAGGGGTCATTACGTTAGACACTGAGATTCAGATGCAGCGGATGGTATTTAAAACCAACACAGATGCTATTAATTTCTTCAACAAAGCTATAGCAGTTGATGATGATCTGTCTTTTTCTTCATCTGCACATGCCTTTATTAGATTCTATAAAGTTTCCGGCAAGAGGATATACGTTGCCAAACAATCTATTGAACTTTTGGAGTCTTTAGTCATTTTGAGAAATCTACGAAACCCTTTGTACTTACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1047

Amino Acids

116.98

Weight (kDa)

5.84

Isoelectric Point (pI)

42.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 64 - 127 2.5e-07 Ankyrin repeats (3 copies)
Ank_2 PF12796 147 - 225 3.4e-10 Ankyrin repeats (3 copies)
RRM_1 PF00076 325 - 395 9e-14 RNA recognition motif
OST-HTH PF12872 490 - 540 4.6e-07 OST-HTH/LOTUS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2642
AarI CACCTGC 1 cut(s) 2152
AasI GACNNNNNNGTC 1 cut(s) 1650
Acc36I ACCTGC 1 cut(s) 2152
AccB1I GGYRCC 1 cut(s) 2498
AccI GTMKAC 3 cut(s) 114, 1642, 2393
AccII CGCG 2 cut(s) 188, 335
AccIII TCCGGA 1 cut(s) 7
AcoI YGGCCR 2 cut(s) 163, 1667
AcsI RAATTY 3 cut(s) 1532, 1672, 2213
AcuI CTGAAG 6 cut(s) 380, 981, 1502, 1802, 1865, 2349
AfaI GTAC 9 cut(s) 376, 805, 884, 1612, 1864, 2009, 2061, 2297, 3134
AfiI CCNNNNNNNGG 7 cut(s) 55, 559, 1328, 1786, 2555, 2630, 3057
AflII CTTAAG 1 cut(s) 2603
AflIII ACRYGT 2 cut(s) 333, 1370
AgeI ACCGGT 1 cut(s) 2630
AhlI ACTAGT 1 cut(s) 2191
AjnI CCWGG 3 cut(s) 714, 1459, 2168
AleI CACNNNNGTG 2 cut(s) 320, 2015
Alw21I GWGCWC 3 cut(s) 138, 472, 1409
Alw26I GTCTC 5 cut(s) 86, 333, 1481, 2093, 2314
AlwNI CAGNNNCTG 1 cut(s) 2057
Ama87I CYCGRG 1 cut(s) 1095
Aor13HI TCCGGA 1 cut(s) 7
AoxI GGCC 9 cut(s) 87, 129, 163, 294, 540, 780, 1667, 1682, 2366
ApeKI GCWGC 7 cut(s) 210, 518, 950, 1898, 1946, 2609, 2929
ApoI RAATTY 3 cut(s) 1532, 1672, 2213
AseI ATTAAT 1 cut(s) 2964
AsiGI ACCGGT 1 cut(s) 2630
Asp700I GAANNNNTTC 2 cut(s) 1595, 2559
AspLEI GCGC 3 cut(s) 236, 244, 1340
AspS9I GGNCC 5 cut(s) 379, 541, 1414, 2069, 2367
AsuC2I CCSGG 3 cut(s) 167, 298, 2503
AsuHPI GGTGA 8 cut(s) 410, 829, 853, 1156, 1233, 1325, 1769, 1811
AvaI CYCGRG 1 cut(s) 1095
AvaII GGWCC 3 cut(s) 379, 1414, 2069
AxyI CCTNAGG 1 cut(s) 383
BanI GGYRCC 1 cut(s) 2498
BanII GRGCYC 2 cut(s) 138, 1409
BauI CACGAG 4 cut(s) 53, 137, 275, 2358
BbsI GAAGAC 8 cut(s) 72, 570, 834, 1808, 1871, 2282, 2577, 2748
Bbv12I GWGCWC 3 cut(s) 138, 472, 1409
BbvI GCAGC 7 cut(s) 197, 505, 937, 1910, 1933, 2621, 2941
BccI CCATC 4 cut(s) 917, 2474, 2660, 2929
BceAI ACGGC 2 cut(s) 95, 333
BcgI CGANNNNNNTGC 2 cut(s) 181, 215
BciT130I CCWGG 3 cut(s) 716, 1461, 2170
BclI TGATCA 1 cut(s) 102
BcnI CCSGG 3 cut(s) 167, 298, 2503
BcoDI GTCTC 5 cut(s) 86, 333, 1481, 2093, 2314
BcuI ACTAGT 1 cut(s) 2191
BfaI CTAG 8 cut(s) 179, 458, 1650, 1977, 2192, 2345, 2510, 2879
BfmI CTRYAG 4 cut(s) 708, 1056, 1283, 2982
BfoI RGCGCY 1 cut(s) 245
BfrI CTTAAG 1 cut(s) 2603
BfuAI ACCTGC 1 cut(s) 2152
BmcAI AGTACT 3 cut(s) 884, 1864, 2297
Bme1390I CCNGG 6 cut(s) 167, 298, 716, 1461, 2170, 2503
Bme18I GGWCC 3 cut(s) 379, 1414, 2069
BmeT110I CYCGRG 1 cut(s) 1095
BmgT120I GGNCC 5 cut(s) 379, 541, 1414, 2069, 2367
BmiI GGNNCC 6 cut(s) 6, 1416, 2033, 2427, 2500, 2547
BmrFI CCNGG 6 cut(s) 167, 298, 716, 1461, 2170, 2503
BmsI GCATC 4 cut(s) 211, 1042, 2916, 2947
BpiI GAAGAC 8 cut(s) 72, 570, 834, 1808, 1871, 2282, 2577, 2748
BplI GAGNNNNNCTC 4 cut(s) 221, 253, 1610, 1642
BpuEI CTTGAG 3 cut(s) 566, 711, 2011
BpuMI CCSGG 3 cut(s) 167, 298, 2503
BsaBI GATNNNNATC 1 cut(s) 2997
BsaI GGTCTC 1 cut(s) 1481
BsaJI CCNNGG 6 cut(s) 237, 864, 1354, 1460, 2065, 2502
BsaWI WCCGGW 2 cut(s) 7, 2630
BsaXI ACNNNNNCTCC 6 cut(s) 1461, 1491, 1680, 1710, 2856, 2886
Bsc4I CCNNNNNNNGG 7 cut(s) 55, 559, 1328, 1786, 2555, 2630, 3057
Bse118I RCCGGY 2 cut(s) 1901, 2630
Bse1I ACTGG 1 cut(s) 1551
Bse21I CCTNAGG 1 cut(s) 383
Bse8I GATNNNNATC 1 cut(s) 2997
BseAI TCCGGA 1 cut(s) 7
BseBI CCWGG 3 cut(s) 716, 1461, 2170
BseDI CCNNGG 6 cut(s) 237, 864, 1354, 1460, 2065, 2502
BseGI GGATG 5 cut(s) 928, 1997, 2323, 2842, 2940
BseJI GATNNNNATC 1 cut(s) 2997
BseLI CCNNNNNNNGG 7 cut(s) 55, 559, 1328, 1786, 2555, 2630, 3057
BseNI ACTGG 1 cut(s) 1551
BseRI GAGGAG 2 cut(s) 927, 1139
BseX3I CGGCCG 1 cut(s) 163
BseXI GCAGC 7 cut(s) 197, 505, 937, 1910, 1933, 2621, 2941
BsgI GTGCAG 4 cut(s) 628, 2271, 2435, 3003
Bsh1236I CGCG 2 cut(s) 188, 335
Bsh1285I CGRYCG 3 cut(s) 84, 166, 186
BshFI GGCC 9 cut(s) 89, 131, 165, 296, 542, 782, 1669, 1684, 2368
BshNI GGYRCC 1 cut(s) 2498
BshTI ACCGGT 1 cut(s) 2630
BsiEI CGRYCG 3 cut(s) 84, 166, 186
BsiHKAI GWGCWC 3 cut(s) 138, 472, 1409
BsiHKCI CYCGRG 1 cut(s) 1095
BsiSI CCGG 8 cut(s) 8, 166, 297, 1666, 1902, 2502, 2631, 3051
BsiWI CGTACG 1 cut(s) 374
BslFI GGGAC 1 cut(s) 2122
BslI CCNNNNNNNGG 7 cut(s) 55, 559, 1328, 1786, 2555, 2630, 3057
BsmAI GTCTC 5 cut(s) 86, 333, 1481, 2093, 2314
BsmBI CGTCTC 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 2122
BsmI GAATGC 1 cut(s) 2301
BsnI GGCC 9 cut(s) 89, 131, 165, 296, 542, 782, 1669, 1684, 2368
Bso31I GGTCTC 1 cut(s) 1481
BsoBI CYCGRG 1 cut(s) 1095
Bsp1286I GDGCHC 3 cut(s) 138, 472, 1409
Bsp13I TCCGGA 1 cut(s) 7
Bsp19I CCATGG 1 cut(s) 2065
BspANI GGCC 9 cut(s) 89, 131, 165, 296, 542, 782, 1669, 1684, 2368
BspEI TCCGGA 1 cut(s) 7
BspFNI CGCG 2 cut(s) 188, 335
BspHI TCATGA 1 cut(s) 1840
BspLI GGNNCC 6 cut(s) 6, 1416, 2033, 2427, 2500, 2547
BspMAI CTGCAG 1 cut(s) 1287
BspMI ACCTGC 1 cut(s) 2152
BspT107I GGYRCC 1 cut(s) 2498
BspTI CTTAAG 1 cut(s) 2603
BspTNI GGTCTC 1 cut(s) 1481
BsrFI RCCGGY 2 cut(s) 1901, 2630
BsrI ACTGG 1 cut(s) 1551
BssAI RCCGGY 2 cut(s) 1901, 2630
BssECI CCNNGG 6 cut(s) 237, 864, 1354, 1460, 2065, 2502
BssNAI GTATAC 1 cut(s) 2394
BssSI CACGAG 4 cut(s) 53, 137, 275, 2358
BssT1I CCWWGG 3 cut(s) 864, 1354, 2065
Bst1107I GTATAC 1 cut(s) 2394
Bst2BI CACGAG 4 cut(s) 53, 137, 275, 2358
Bst2UI CCWGG 3 cut(s) 716, 1461, 2170
Bst4CI ACNGT 6 cut(s) 398, 414, 763, 2450, 2647, 2695
Bst6I CTCTTC 3 cut(s) 1026, 1510, 1983
BstAFI CTTAAG 1 cut(s) 2603
BstAPI GCANNNNNTGC 1 cut(s) 2249
BstC8I GCNNGC 1 cut(s) 1152
BstDSI CCRYGG 1 cut(s) 2065
BstENI CCTNNNNNAGG 2 cut(s) 1326, 2553
BstF5I GGATG 5 cut(s) 928, 1997, 2323, 2842, 2940
BstFNI CGCG 2 cut(s) 188, 335
BstH2I RGCGCY 1 cut(s) 245
BstHHI GCGC 3 cut(s) 236, 244, 1340
BstMAI GTCTC 5 cut(s) 86, 333, 1481, 2093, 2314
BstMCI CGRYCG 3 cut(s) 84, 166, 186
BstMWI GCNNNNNNNGC 6 cut(s) 1142, 1151, 1943, 2153, 2249, 2522
BstNI CCWGG 3 cut(s) 716, 1461, 2170
BstNSI RCATGY 2 cut(s) 1374, 3026
BstSCI CCNGG 6 cut(s) 165, 296, 714, 1459, 2168, 2501
BstSFI CTRYAG 4 cut(s) 708, 1056, 1283, 2982
BstUI CGCG 2 cut(s) 188, 335
BstV1I GCAGC 7 cut(s) 197, 505, 937, 1910, 1933, 2621, 2941
BstV2I GAAGAC 8 cut(s) 72, 570, 834, 1808, 1871, 2282, 2577, 2748
BstX2I RGATCY 4 cut(s) 25, 549, 2053, 2506
BstYI RGATCY 4 cut(s) 25, 549, 2053, 2506
BstZ17I GTATAC 1 cut(s) 2394
BstZI CGGCCG 1 cut(s) 163
Bsu36I CCTNAGG 1 cut(s) 383
BsuRI GGCC 9 cut(s) 89, 131, 165, 296, 542, 782, 1669, 1684, 2368
BtgI CCRYGG 1 cut(s) 2065
BtsCI GGATG 5 cut(s) 928, 1997, 2323, 2842, 2940
BtsI GCAGTG 1 cut(s) 1280
BtsIMutI CAGTG 8 cut(s) 645, 759, 1005, 1050, 1280, 1585, 2455, 2913
BveI ACCTGC 1 cut(s) 2152
Cac8I GCNNGC 1 cut(s) 1152
CaiI CAGNNNCTG 1 cut(s) 2057
CciI TCATGA 1 cut(s) 1840
CfoI GCGC 3 cut(s) 236, 244, 1340
Cfr10I RCCGGY 2 cut(s) 1901, 2630
Cfr13I GGNCC 5 cut(s) 379, 541, 1414, 2069, 2367
CseI GACGC 2 cut(s) 177, 2860
Csp6I GTAC 9 cut(s) 375, 804, 883, 1611, 1863, 2008, 2060, 2296, 3133
CspAI ACCGGT 1 cut(s) 2630
CviQI GTAC 9 cut(s) 375, 804, 883, 1611, 1863, 2008, 2060, 2296, 3133
DraI TTTAAA 1 cut(s) 2944
DrdI GACNNNNNNGTC 1 cut(s) 1650
DseDI GACNNNNNNGTC 1 cut(s) 1650
EaeI YGGCCR 2 cut(s) 163, 1667
EagI CGGCCG 1 cut(s) 163
Eam1104I CTCTTC 3 cut(s) 1026, 1510, 1983
EarI CTCTTC 3 cut(s) 1026, 1510, 1983
EciI GGCGGA 2 cut(s) 25, 267
Ecl136II GAGCTC 2 cut(s) 136, 1407
EclXI CGGCCG 1 cut(s) 163
Eco130I CCWWGG 3 cut(s) 864, 1354, 2065
Eco147I AGGCCT 2 cut(s) 782, 1684
Eco24I GRGCYC 2 cut(s) 138, 1409
Eco31I GGTCTC 1 cut(s) 1481
Eco47I GGWCC 3 cut(s) 379, 1414, 2069
Eco52I CGGCCG 1 cut(s) 163
Eco53kI GAGCTC 2 cut(s) 136, 1407
Eco57I CTGAAG 6 cut(s) 380, 981, 1502, 1802, 1865, 2349
Eco81I CCTNAGG 1 cut(s) 383
Eco88I CYCGRG 1 cut(s) 1095
EcoICRI GAGCTC 2 cut(s) 136, 1407
EcoNI CCTNNNNNAGG 2 cut(s) 1326, 2553
EcoO109I RGGNCCY 2 cut(s) 541, 1414
EcoRII CCWGG 3 cut(s) 714, 1459, 2168
EcoT14I CCWWGG 3 cut(s) 864, 1354, 2065
EcoT22I ATGCAT 1 cut(s) 2599
EcoT38I GRGCYC 2 cut(s) 138, 1409
ErhI CCWWGG 3 cut(s) 864, 1354, 2065
Esp3I CGTCTC 1 cut(s) 86
FaqI GGGAC 1 cut(s) 2122
FauNDI CATATG 1 cut(s) 1631
FbaI TGATCA 1 cut(s) 102
FblI GTMKAC 3 cut(s) 114, 1642, 2393
FokI GGATG 5 cut(s) 935, 1984, 2310, 2829, 2947
FriOI GRGCYC 2 cut(s) 138, 1409
FspBI CTAG 8 cut(s) 179, 458, 1650, 1977, 2192, 2345, 2510, 2879
GlaI GCGC 3 cut(s) 235, 243, 1339
HaeII RGCGCY 1 cut(s) 245
HaeIII GGCC 9 cut(s) 89, 131, 165, 296, 542, 782, 1669, 1684, 2368
HapII CCGG 8 cut(s) 8, 166, 297, 1666, 1902, 2502, 2631, 3051
HgaI GACGC 2 cut(s) 177, 2860
HhaI GCGC 3 cut(s) 236, 244, 1340
Hin6I GCGC 3 cut(s) 234, 242, 1338
HinP1I GCGC 3 cut(s) 234, 242, 1338
HincII GTYRAC 2 cut(s) 501, 853
HindII GTYRAC 2 cut(s) 501, 853
HindIII AAGCTT 2 cut(s) 873, 2786
HpaI GTTAAC 1 cut(s) 853
HpaII CCGG 8 cut(s) 8, 166, 297, 1666, 1902, 2502, 2631, 3051
HphI GGTGA 8 cut(s) 410, 829, 853, 1156, 1233, 1325, 1769, 1811
Hpy166II GTNNAC 8 cut(s) 115, 280, 501, 853, 1003, 1643, 2010, 2394
Hpy8I GTNNAC 8 cut(s) 115, 280, 501, 853, 1003, 1643, 2010, 2394
Hpy99I CGWCG 1 cut(s) 193
HpyAV CCTTC 9 cut(s) 385, 563, 793, 1005, 1304, 1709, 2045, 2549, 2888
HpyCH4III ACNGT 6 cut(s) 398, 414, 763, 2450, 2647, 2695
HpyCH4IV ACGT 5 cut(s) 690, 1161, 1639, 2906, 3066
HpyF10VI GCNNNNNNNGC 6 cut(s) 1142, 1151, 1943, 2153, 2249, 2522
HpySE526I ACGT 5 cut(s) 690, 1161, 1639, 2906, 3066
HspAI GCGC 3 cut(s) 234, 242, 1338
Kpn2I TCCGGA 1 cut(s) 7
Ksp22I TGATCA 1 cut(s) 102
KspAI GTTAAC 1 cut(s) 853
LmnI GCTCC 5 cut(s) 10, 201, 263, 668, 926
Lsp1109I GCAGC 7 cut(s) 197, 505, 937, 1910, 1933, 2621, 2941
LweI GCATC 4 cut(s) 211, 1042, 2916, 2947
MaeI CTAG 8 cut(s) 179, 458, 1650, 1977, 2192, 2345, 2510, 2879
MaeII ACGT 5 cut(s) 690, 1161, 1639, 2906, 3066
MfeI CAATTG 1 cut(s) 1893
MflI RGATCY 4 cut(s) 25, 549, 2053, 2506
MhlI GDGCHC 3 cut(s) 138, 472, 1409
MluI ACGCGT 1 cut(s) 333
MmeI TCCRAC 4 cut(s) 73, 396, 540, 961
Mph1103I ATGCAT 1 cut(s) 2599
MroI TCCGGA 1 cut(s) 7
MroXI GAANNNNTTC 2 cut(s) 1595, 2559
MslI CAYNNNNRTG 3 cut(s) 320, 945, 2015
MspA1I CMGCKG 2 cut(s) 1937, 2932
MspCI CTTAAG 1 cut(s) 2603
MspI CCGG 8 cut(s) 8, 166, 297, 1666, 1902, 2502, 2631, 3051
MspR9I CCNGG 6 cut(s) 167, 298, 716, 1461, 2170, 2503
MunI CAATTG 1 cut(s) 1893
Mva1269I GAATGC 1 cut(s) 2301
MvaI CCWGG 3 cut(s) 716, 1461, 2170
MvnI CGCG 2 cut(s) 188, 335
MwoI GCNNNNNNNGC 6 cut(s) 1142, 1151, 1943, 2153, 2249, 2522
NciI CCSGG 3 cut(s) 167, 298, 2503
NcoI CCATGG 1 cut(s) 2065
NdeI CATATG 1 cut(s) 1631
NlaIV GGNNCC 6 cut(s) 6, 1416, 2033, 2427, 2500, 2547
NmeAIII GCCGAG 5 cut(s) 115, 138, 157, 218, 228
NsiI ATGCAT 1 cut(s) 2599
NspI RCATGY 2 cut(s) 1374, 3026
OliI CACNNNNGTG 2 cut(s) 320, 2015
PaeR7I CTCGAG 1 cut(s) 1095
PagI TCATGA 1 cut(s) 1840
PaqCI CACCTGC 1 cut(s) 2152
PceI AGGCCT 2 cut(s) 782, 1684
PciI ACATGT 1 cut(s) 1370
PcsI WCGNNNNNNNCGW 2 cut(s) 81, 288
PctI GAATGC 1 cut(s) 2301
PdmI GAANNNNTTC 2 cut(s) 1595, 2559
Pfl23II CGTACG 1 cut(s) 374
PflFI GACNNNGTC 2 cut(s) 80, 187
PfoI TCCNGGA 1 cut(s) 2168
PinAI ACCGGT 1 cut(s) 2630
PpuMI RGGWCCY 1 cut(s) 1414
PscI ACATGT 1 cut(s) 1370
PshBI ATTAAT 1 cut(s) 2964
PsiI TTATAA 1 cut(s) 2642
Psp124BI GAGCTC 2 cut(s) 138, 1409
Psp5II RGGWCCY 1 cut(s) 1414
Psp6I CCWGG 3 cut(s) 714, 1459, 2168
PspGI CCWGG 3 cut(s) 714, 1459, 2168
PspLI CGTACG 1 cut(s) 374
PspN4I GGNNCC 6 cut(s) 6, 1416, 2033, 2427, 2500, 2547
PspPI GGNCC 5 cut(s) 379, 541, 1414, 2069, 2367
PspPPI RGGWCCY 1 cut(s) 1414
PsrI GAACNNNNNNTAC 2 cut(s) 1705, 1737
PstI CTGCAG 1 cut(s) 1287
PstNI CAGNNNCTG 1 cut(s) 2057
PsuI RGATCY 4 cut(s) 25, 549, 2053, 2506
PsyI GACNNNGTC 2 cut(s) 80, 187
PvuII CAGCTG 1 cut(s) 1937
RsaI GTAC 9 cut(s) 376, 805, 884, 1612, 1864, 2009, 2061, 2297, 3134
RsaNI GTAC 9 cut(s) 375, 804, 883, 1611, 1863, 2008, 2060, 2296, 3133
RseI CAYNNNNRTG 3 cut(s) 320, 945, 2015
SacI GAGCTC 2 cut(s) 138, 1409
Sau96I GGNCC 5 cut(s) 379, 541, 1414, 2069, 2367
ScaI AGTACT 3 cut(s) 884, 1864, 2297
ScrFI CCNGG 6 cut(s) 167, 298, 716, 1461, 2170, 2503
SduI GDGCHC 3 cut(s) 138, 472, 1409
SfaNI GCATC 4 cut(s) 211, 1042, 2916, 2947
SfcI CTRYAG 4 cut(s) 708, 1056, 1283, 2982
Sfr274I CTCGAG 1 cut(s) 1095
SinI GGWCC 3 cut(s) 379, 1414, 2069
SlaI CTCGAG 1 cut(s) 1095
SmiMI CAYNNNNRTG 3 cut(s) 320, 945, 2015
SmlI CTYRAG 5 cut(s) 545, 726, 1095, 2026, 2603
SmoI CTYRAG 5 cut(s) 545, 726, 1095, 2026, 2603
SpeI ACTAGT 1 cut(s) 2191
SseBI AGGCCT 2 cut(s) 782, 1684
SspI AATATT 2 cut(s) 1805, 2287
SspMI CTAG 8 cut(s) 179, 458, 1650, 1977, 2192, 2345, 2510, 2879
SstI GAGCTC 2 cut(s) 138, 1409
StuI AGGCCT 2 cut(s) 782, 1684
StyD4I CCNGG 6 cut(s) 165, 296, 714, 1459, 2168, 2501
StyI CCWWGG 3 cut(s) 864, 1354, 2065
TaaI ACNGT 6 cut(s) 398, 414, 763, 2450, 2647, 2695
TaiI ACGT 5 cut(s) 693, 1164, 1642, 2909, 3069
TaqI TCGA 9 cut(s) 75, 84, 120, 149, 191, 1096, 1292, 2207, 2440
TaqII GACCGA 2 cut(s) 70, 2760
TatI WGTACW 6 cut(s) 803, 882, 1862, 2059, 2295, 3132
TauI GCSGC 3 cut(s) 165, 310, 2516
TscAI CASTG 8 cut(s) 652, 766, 1005, 1050, 1287, 1585, 2455, 2920
TseI GCWGC 7 cut(s) 210, 518, 950, 1898, 1946, 2609, 2929
TspGWI ACGGA 5 cut(s) 392, 605, 2555, 2720, 2781
TspRI CASTG 8 cut(s) 652, 766, 1005, 1050, 1287, 1585, 2455, 2920
Tth111I GACNNNGTC 2 cut(s) 80, 187
Vha464I CTTAAG 1 cut(s) 2603
VpaK11BI GGWCC 3 cut(s) 379, 1414, 2069
VspI ATTAAT 1 cut(s) 2964
XagI CCTNNNNNAGG 2 cut(s) 1326, 2553
XapI RAATTY 3 cut(s) 1532, 1672, 2213
XbaI TCTAGA 1 cut(s) 457
XceI RCATGY 2 cut(s) 1374, 3026
XhoI CTCGAG 1 cut(s) 1095
XmiI GTMKAC 3 cut(s) 114, 1642, 2393
XmnI GAANNNNTTC 2 cut(s) 1595, 2559
XspI CTAG 8 cut(s) 179, 458, 1650, 1977, 2192, 2345, 2510, 2879
ZrmI AGTACT 3 cut(s) 884, 1864, 2297
Zsp2I ATGCAT 1 cut(s) 2599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.