Rh2AG617600

OST-HTH/LOTUS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000679
Physical Location & Seq
Forward (+)
84154611 .. 84162775
8165 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG617600.1

Sequence Viewer

Length: 2883 bp
ATGGATCCGGAAAAACAAAGCTTCCGAGGAGCCTCGGAGCTCTTCAACTCGTCTCCGAGTGTGACCAGAGCCGTCTATCTCGACGACAAGGACGAGCTCGTGGCTCAGATGAAGCGGATCGGCGGCGACGCCCTGAACCGAGCGACGGCGTCAAAGCTCCTTCACCTCTGCTGCAAGTCTGACTCGGCGGAGTGCGCCTCTGCTCTTCTCGGCGGAGAACTCGGGACGATTCCTTTAGTGAACGAGTTGGACGACTCGGGGAAATCGCCGCTGCACACGGCGGCGTTGGCTCACGCGTCGCGGTGCGTGGAGGTGTTGCTGAAGAAACACGCTCGTACGGACCTGAAGACCAGGGACGGTAAGGCACAGCTAGCACTCGAGCTGTCGCTTAGTGACGCAAGGATGGAAGTGCGTCGGAGTCCCAACTTCAATTTGGTAATTCACTCAAGTGAAAAGGATTTGAGCACTGTGAAACTTTTAAGTGAAAAAACTAAAGAGATTGCTGAGGTGGCTTATTCATACGCAGGGCGCGTAGCTTCTCTGACTGCTCTACTCATCGTCGCCGCCGAGAAGGTTAACAATTCCGTCTTGGAATTGCGTGATTCCGACTCAGGTCGCAAGGAGAAGGTGACCATCTACGAATGCCTTATAAGGGAGGCTTTGGCCCTGGGCTGCCTTACAAGGGAGAGCGAAAATTCAGAGAGAAGGAAGCTGTTGCTTTGCGAGATAGAGCTGCTTCAGCTCTTCGGAGTTGTAGCTCAGAGCAGCGGTGGTGGGGACAAGAAGGTGACTTCGCCACTTATCCTTGCAGCTCAGCGAGGAGATGGAGGTGTTATCCAGCTGCTTCTGAAGACAAATATACATGTCAACGATGCTGATGCAGATGGAAATTCTGCTCTTCATTGGATACTTGGAATTGTATTGCTTCTCATTGAGCATGGCGCCCTAGTAAGCCAAAGGAATAAATTGGGGTTGACAGCATTTCATATTGCTGCCGGTAATGGTAATGCTGAGGCCCTTGAGGTCCTTCTGTTGGAAGACCCAGACGGAGTGCAGTATATGACGGAAATGAAAGAAACCCCTCTGTTTTTCGCTGTGAAGAATGAGAGTGAGGACTGTGCTAAGCTTCTTTTGACCTGGGGAGCAAATAGTGAAGTCCTTAATCTACGTACGCAAAGAGCTATAGACCTGGCAACCTCTCAAGAGATGCGTTACATATTGCTGAATCCAACCACTATTAGCCTTATTAATGATGCCTTCCCCTATCAGCTTAAATGTATGGCTTTAGAGTTGGCAGATGAAGAGACCACTACCAAAAGGCATACTCGTGCGTGTTTATATCTTTACTTTGTTCATGGTTCTCAAGTTGTTACCCCTGTGAATGCTAGAAATGTCAACTCAAGCACCATGGCAGACGTTTGTAAGTACTTCAACCGTCATCAAGGATGTGTCAGAGGAGCAAAGTTCTTTAATTCACATTGTGAGGAGTCTCAGAAAGTGAAGGAGGGAGAAGACAGGAATCATTCTTCTGCTGATAAACTACTCAAACGCAAAATCTTTGTTGGAAGACTTCCTCCTTCAGTGGACTCTGAAGAGTTTGGATCAGTGGAAGATGCTGTAGTTATTGTAACTCAAACAGAAAACAAGATACAATCTCGAGGCTTTGGTTTTGTCACATTTAGAGGGGAGAAATCTGCTTCAGAAGCCATGCTAGTGCTCTACATCACCTTGAGAGGTAAGAAAGTTGAAATAAAAAGTTTGATTCCAAAATTGGTTTTGGGAGCTGACCTTGAGAAAATGTCACCTCAACCACAAGATCAAGAGAAGAGTTTTCAATACCAGCTTCCACTGCAGAAGCCGAACGAGAATATTGTGGAAGGTCTGTCAAAGCATTCAAATTATGCTCTCTCTTCTCTAAAAGCTGACTTCAAGGCTAAATTTGGGTTAGAACTGGATCACTCATCTGTGGGCTACTCTAAGCTCAGTGACTTCCTGAAGCGTGTCTCCGATTTATGTACCATCGAGATTCTCCCCATATGCAAACATGGAACTCCAACTCACATGATCCTCCATCCAAAATTTTCTAGTCCTCAATGCCGCCTCCTTCCTACACTCAGAACAACTCACACTCTGTCTTTGTCTGCATTTGTTGTGAATGGTGGTGATTCAAAGTGTCTTTCATCCCTCTTAAGTGGCAATGGTGGTGATTTAAAGGATCTTCAGAACCTTTCAACTGACAGCGGTAGTGATGAGAAGTGTCTCCAGGACCTTCCAACTGACAATGCTATTGATTCAAAGTGCCTTCAGGACCTTTCACTTGATTCTGGTGGTGATTCAGAGTGTGTTGGAGACGAAATGTATGGCTCAAGTGTCACTAGCCATGGGGAAGAGAAACCCTCCTCTGGGTATCCTGAAATGAACTCTAAACAGGATAAAGCACACTGTTTGCACCCAAGGTTCCTTCAATTCTTGAAGCTAGATCCTCTACTCCATGGTCAGAATGATACTGATGTGCTTGCTGGAGAGAGTGACAATGAAAAAGGACAGTGCAATGCAGGAGATAAGAATACAAGCGAATCATATTTCCTTCATGAATCTGATTCTTGCAAGGTTAAAGGCACTACAAACATTGCATGGGTTTCAAAAGAGTGTGTAGTCCTTGCCACTGATTCTCGTGGTACTTGCAAAAAGAGTTTAGGCGTCGTTGGTCAGTCAATGGAGAGGGATCCTGATGCAGGTGGTACCATGTTCCTTATTGCTGGATTATTACAATCAGAGGCTCCAAATTGTTGTTTTCTGTACGATCTCTTTAAAGAGAAGGAAGACCATGCATGTGGCTTGGAGGAGGTTCCAAATTGGAAGGCAGTTGGCAGTGGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 OST-HTH RRM_1

Protein Analysis

960

Amino Acids

104.87

Weight (kDa)

5.7

Isoelectric Point (pI)

41.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 32 - 115 2.8e-07 Ankyrin repeats (3 copies)
Ank_2 PF12796 306 - 383 5.1e-11 Ankyrin repeats (3 copies)
OST-HTH PF12872 617 - 675 1.6e-08 OST-HTH/LOTUS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 650
AarI CACCTGC 1 cut(s) 2726
Acc36I ACCTGC 1 cut(s) 2726
Acc65I GGTACC 1 cut(s) 2741
AccB1I GGYRCC 2 cut(s) 941, 2741
AccII CGCG 3 cut(s) 296, 301, 531
AccIII TCCGGA 1 cut(s) 7
AclWI GGATC 9 cut(s) 12, 125, 1609, 1962, 2059, 2223, 2474, 2720, 2733
AcsI RAATTY 4 cut(s) 694, 889, 1937, 2078
AcyI GRCGYC 4 cut(s) 129, 149, 942, 2700
AdeI CACNNNGTG 1 cut(s) 1481
AfaI GTAC 7 cut(s) 337, 1171, 1427, 2017, 2680, 2743, 2801
AfiI CCNNNNNNNGG 7 cut(s) 145, 652, 682, 1033, 2402, 2403, 2735
AflII CTTAAG 1 cut(s) 2188
AflIII ACRYGT 2 cut(s) 294, 862
AjnI CCWGG 5 cut(s) 350, 666, 1136, 1188, 2262
AleI CACNNNNGTG 1 cut(s) 447
Alw21I GWGCWC 4 cut(s) 42, 99, 467, 1719
Alw26I GTCTC 6 cut(s) 57, 1298, 1494, 2008, 2264, 2343
AlwI GGATC 9 cut(s) 12, 125, 1609, 1962, 2059, 2223, 2474, 2720, 2733
Ama87I CYCGRG 4 cut(s) 221, 256, 377, 1656
Aor13HI TCCGGA 1 cut(s) 7
AoxI GGCC 2 cut(s) 663, 1014
ApeKI GCWGC 8 cut(s) 171, 271, 672, 733, 765, 809, 841, 992
ApoI RAATTY 4 cut(s) 694, 889, 1937, 2078
AseI ATTAAT 1 cut(s) 1248
Asp718I GGTACC 1 cut(s) 2741
AspLEI GCGC 3 cut(s) 197, 531, 944
AspS9I GGNCC 6 cut(s) 340, 664, 1015, 1024, 2266, 2308
AsuHPI GGTGA 8 cut(s) 155, 640, 799, 1717, 1794, 2174, 2216, 2342
AsuNHI GCTAGC 1 cut(s) 370
AvaI CYCGRG 4 cut(s) 221, 256, 377, 1656
AvaII GGWCC 4 cut(s) 340, 1024, 2266, 2308
BaeI ACNNNNGTAYC 2 cut(s) 2496, 2529
BamHI GGATCC 2 cut(s) 4, 2725
BanI GGYRCC 2 cut(s) 941, 2741
BanII GRGCYC 2 cut(s) 42, 99
BauI CACGAG 3 cut(s) 98, 1326, 2673
BbsI GAAGAC 6 cut(s) 353, 857, 1044, 1518, 1573, 2829
Bbv12I GWGCWC 4 cut(s) 42, 99, 467, 1719
BbvCI CCTCAGC 2 cut(s) 504, 1011
BbvI GCAGC 8 cut(s) 158, 258, 659, 720, 777, 821, 828, 979
BccI CCATC 6 cut(s) 397, 641, 818, 878, 2027, 2079
BceAI ACGGC 3 cut(s) 56, 162, 294
BcgI CGANNNNNNTGC 2 cut(s) 860, 894
BciT130I CCWGG 5 cut(s) 352, 668, 1138, 1190, 2264
BciVI GTATCC 2 cut(s) 900, 2418
BcoDI GTCTC 6 cut(s) 57, 1298, 1494, 2008, 2264, 2343
BfaI CTAG 7 cut(s) 371, 947, 1386, 1712, 2085, 2376, 2477
BfmI CTRYAG 3 cut(s) 1182, 1617, 1850
BfoI RGCGCY 1 cut(s) 945
BfrI CTTAAG 1 cut(s) 2188
BfuAI ACCTGC 1 cut(s) 2726
BfuI GTATCC 2 cut(s) 900, 2418
BlpI GCTNAGC 2 cut(s) 813, 1122
BmcAI AGTACT 1 cut(s) 1427
Bme1390I CCNGG 5 cut(s) 352, 668, 1138, 1190, 2264
Bme18I GGWCC 4 cut(s) 340, 1024, 2266, 2308
BmeT110I CYCGRG 4 cut(s) 221, 256, 377, 1656
BmgT120I GGNCC 6 cut(s) 340, 664, 1015, 1024, 2266, 2308
BmiI GGNNCC 8 cut(s) 6, 31, 943, 2459, 2727, 2743, 2781, 2850
BmrFI CCNGG 5 cut(s) 352, 668, 1138, 1190, 2264
BmsI GCATC 6 cut(s) 862, 868, 1197, 1243, 1603, 2722
BmtI GCTAGC 1 cut(s) 374
BoxI GACNNNNGTC 1 cut(s) 612
BpiI GAAGAC 6 cut(s) 353, 857, 1044, 1518, 1573, 2829
BplI GAGNNNNNCTC 4 cut(s) 182, 214, 2381, 2413
BpmI CTGGAG 2 cut(s) 2246, 2541
Bpu10I CCTNAGC 2 cut(s) 504, 1011
Bpu1102I GCTNAGC 2 cut(s) 813, 1122
BpuEI CTTGAG 8 cut(s) 430, 1040, 1185, 1347, 1384, 1750, 1811, 2350
BsaAI YACGTR 1 cut(s) 1169
BsaHI GRCGYC 4 cut(s) 129, 149, 942, 2700
BsaI GGTCTC 1 cut(s) 1298
BsaWI WCCGGW 1 cut(s) 7
Bsc4I CCNNNNNNNGG 7 cut(s) 145, 652, 682, 1033, 2402, 2403, 2735
Bse118I RCCGGY 1 cut(s) 995
Bse1I ACTGG 1 cut(s) 1956
Bse3DI GCAATG 3 cut(s) 2203, 2557, 2628
BseAI TCCGGA 1 cut(s) 7
BseBI CCWGG 5 cut(s) 352, 668, 1138, 1190, 2264
BseGI GGATG 4 cut(s) 408, 1451, 2071, 2180
BseLI CCNNNNNNNGG 7 cut(s) 145, 652, 682, 1033, 2402, 2403, 2735
BseMI GCAATG 3 cut(s) 2203, 2557, 2628
BseMII CTCAG 9 cut(s) 119, 495, 624, 773, 827, 1002, 1505, 1996, 2128
BseNI ACTGG 1 cut(s) 1956
BseRI GAGGAG 6 cut(s) 42, 834, 1470, 1499, 2389, 2858
BseXI GCAGC 8 cut(s) 158, 258, 659, 720, 777, 821, 828, 979
BsgI GTGCAG 2 cut(s) 257, 1073
Bsh1236I CGCG 3 cut(s) 296, 301, 531
BshFI GGCC 2 cut(s) 665, 1016
BshNI GGYRCC 2 cut(s) 941, 2741
BsiHKAI GWGCWC 4 cut(s) 42, 99, 467, 1719
BsiHKCI CYCGRG 4 cut(s) 221, 256, 377, 1656
BsiSI CCGG 2 cut(s) 8, 996
BsiWI CGTACG 2 cut(s) 335, 1169
BslFI GGGAC 4 cut(s) 238, 368, 405, 791
BslI CCNNNNNNNGG 7 cut(s) 145, 652, 682, 1033, 2402, 2403, 2735
BsmAI GTCTC 6 cut(s) 57, 1298, 1494, 2008, 2264, 2343
BsmBI CGTCTC 2 cut(s) 57, 2343
BsmFI GGGAC 4 cut(s) 238, 368, 405, 791
BsmI GAATGC 3 cut(s) 647, 1387, 1891
BsnI GGCC 2 cut(s) 665, 1016
Bso31I GGTCTC 1 cut(s) 1298
BsoBI CYCGRG 4 cut(s) 221, 256, 377, 1656
Bsp1286I GDGCHC 4 cut(s) 42, 99, 467, 1719
Bsp13I TCCGGA 1 cut(s) 7
Bsp1720I GCTNAGC 2 cut(s) 813, 1122
Bsp19I CCATGG 3 cut(s) 1407, 2380, 2491
BspANI GGCC 2 cut(s) 665, 1016
BspCNI CTCAG 9 cut(s) 118, 496, 623, 772, 826, 1003, 1504, 1995, 2127
BspEI TCCGGA 1 cut(s) 7
BspFNI CGCG 3 cut(s) 296, 301, 531
BspHI TCATGA 1 cut(s) 2590
BspLI GGNNCC 8 cut(s) 6, 31, 943, 2459, 2727, 2743, 2781, 2850
BspMAI CTGCAG 1 cut(s) 1854
BspMI ACCTGC 1 cut(s) 2726
BspOI GCTAGC 1 cut(s) 374
BspPI GGATC 9 cut(s) 12, 125, 1609, 1962, 2059, 2223, 2474, 2720, 2733
BspQI GCTCTTC 4 cut(s) 47, 210, 749, 903
BspT107I GGYRCC 2 cut(s) 941, 2741
BspTI CTTAAG 1 cut(s) 2188
BspTNI GGTCTC 1 cut(s) 1298
BsrDI GCAATG 3 cut(s) 2203, 2557, 2628
BsrFI RCCGGY 1 cut(s) 995
BsrI ACTGG 1 cut(s) 1956
BssAI RCCGGY 1 cut(s) 995
BssNI GRCGYC 4 cut(s) 129, 149, 942, 2700
BssSI CACGAG 3 cut(s) 98, 1326, 2673
BssT1I CCWWGG 4 cut(s) 1407, 2380, 2453, 2491
Bst2BI CACGAG 3 cut(s) 98, 1326, 2673
Bst2UI CCWGG 5 cut(s) 352, 668, 1138, 1190, 2264
Bst4CI ACNGT 6 cut(s) 359, 469, 1118, 1436, 2444, 2547
Bst6I CTCTTC 9 cut(s) 47, 210, 749, 903, 1296, 1587, 1820, 1915, 2382
BstACI GRCGYC 4 cut(s) 129, 149, 942, 2700
BstAFI CTTAAG 1 cut(s) 2188
BstBAI YACGTR 1 cut(s) 1169
BstC8I GCNNGC 2 cut(s) 372, 2517
BstDSI CCRYGG 3 cut(s) 1407, 2380, 2491
BstEII GGTNACC 1 cut(s) 628
BstENI CCTNNNNNAGG 1 cut(s) 2733
BstF5I GGATG 4 cut(s) 408, 1451, 2071, 2180
BstFNI CGCG 3 cut(s) 296, 301, 531
BstH2I RGCGCY 1 cut(s) 945
BstHHI GCGC 3 cut(s) 197, 531, 944
BstMAI GTCTC 6 cut(s) 57, 1298, 1494, 2008, 2264, 2343
BstMWI GCNNNNNNNGC 7 cut(s) 194, 287, 371, 509, 739, 1703, 1849
BstNI CCWGG 5 cut(s) 352, 668, 1138, 1190, 2264
BstNSI RCATGY 2 cut(s) 866, 2835
BstPAI GACNNNNGTC 1 cut(s) 612
BstPI GGTNACC 1 cut(s) 628
BstSCI CCNGG 5 cut(s) 350, 666, 1136, 1188, 2262
BstSFI CTRYAG 3 cut(s) 1182, 1617, 1850
BstSNI TACGTA 1 cut(s) 1169
BstUI CGCG 3 cut(s) 296, 301, 531
BstV1I GCAGC 8 cut(s) 158, 258, 659, 720, 777, 821, 828, 979
BstV2I GAAGAC 6 cut(s) 353, 857, 1044, 1518, 1573, 2829
BstX2I RGATCY 4 cut(s) 4, 2215, 2479, 2725
BstXI CCANNNNNNTGG 1 cut(s) 2834
BstYI RGATCY 4 cut(s) 4, 2215, 2479, 2725
BsuI GTATCC 2 cut(s) 900, 2418
BsuRI GGCC 2 cut(s) 665, 1016
BtgI CCRYGG 3 cut(s) 1407, 2380, 2491
BtsCI GGATG 4 cut(s) 408, 1451, 2071, 2180
BtsI GCAGTG 2 cut(s) 1847, 2878
BtsIMutI CAGTG 9 cut(s) 465, 1587, 1611, 1847, 1990, 2440, 2552, 2664, 2878
BveI ACCTGC 1 cut(s) 2726
Cac8I GCNNGC 2 cut(s) 372, 2517
CciI TCATGA 1 cut(s) 2590
CfoI GCGC 3 cut(s) 197, 531, 944
Cfr10I RCCGGY 1 cut(s) 995
Cfr13I GGNCC 6 cut(s) 340, 664, 1015, 1024, 2266, 2308
CseI GACGC 6 cut(s) 137, 138, 285, 401, 404, 2689
Csp6I GTAC 7 cut(s) 336, 1170, 1426, 2016, 2679, 2742, 2800
CviQI GTAC 7 cut(s) 336, 1170, 1426, 2016, 2679, 2742, 2800
DinI GGCGCC 1 cut(s) 943
DraI TTTAAA 2 cut(s) 2211, 2812
DraIII CACNNNGTG 1 cut(s) 1481
Eam1104I CTCTTC 9 cut(s) 47, 210, 749, 903, 1296, 1587, 1820, 1915, 2382
EarI CTCTTC 9 cut(s) 47, 210, 749, 903, 1296, 1587, 1820, 1915, 2382
EciI GGCGGA 2 cut(s) 203, 228
Ecl136II GAGCTC 2 cut(s) 40, 97
Eco105I TACGTA 1 cut(s) 1169
Eco130I CCWWGG 4 cut(s) 1407, 2380, 2453, 2491
Eco24I GRGCYC 2 cut(s) 42, 99
Eco31I GGTCTC 1 cut(s) 1298
Eco47I GGWCC 4 cut(s) 340, 1024, 2266, 2308
Eco53kI GAGCTC 2 cut(s) 40, 97
Eco88I CYCGRG 4 cut(s) 221, 256, 377, 1656
Eco91I GGTNACC 1 cut(s) 628
EcoICRI GAGCTC 2 cut(s) 40, 97
EcoNI CCTNNNNNAGG 1 cut(s) 2733
EcoO109I RGGNCCY 4 cut(s) 1015, 1024, 2266, 2308
EcoO65I GGTNACC 1 cut(s) 628
EcoRII CCWGG 5 cut(s) 350, 666, 1136, 1188, 2262
EcoT14I CCWWGG 4 cut(s) 1407, 2380, 2453, 2491
EcoT22I ATGCAT 1 cut(s) 2833
EcoT38I GRGCYC 2 cut(s) 42, 99
EgeI GGCGCC 1 cut(s) 943
EheI GGCGCC 1 cut(s) 943
ErhI CCWWGG 4 cut(s) 1407, 2380, 2453, 2491
Esp3I CGTCTC 2 cut(s) 57, 2343
FalI AAGNNNNNCTT 2 cut(s) 643, 675
FaqI GGGAC 4 cut(s) 238, 368, 405, 791
FauNDI CATATG 1 cut(s) 2036
FokI GGATG 4 cut(s) 415, 1458, 2058, 2167
FriOI GRGCYC 2 cut(s) 42, 99
FspBI CTAG 7 cut(s) 371, 947, 1386, 1712, 2085, 2376, 2477
GlaI GCGC 3 cut(s) 196, 530, 943
GsuI CTGGAG 2 cut(s) 2246, 2541
HaeII RGCGCY 1 cut(s) 945
HaeIII GGCC 2 cut(s) 665, 1016
HapII CCGG 2 cut(s) 8, 996
HgaI GACGC 6 cut(s) 137, 138, 285, 401, 404, 2689
HhaI GCGC 3 cut(s) 197, 531, 944
Hin1I GRCGYC 4 cut(s) 129, 149, 942, 2700
Hin6I GCGC 3 cut(s) 195, 529, 942
HinP1I GCGC 3 cut(s) 195, 529, 942
HincII GTYRAC 4 cut(s) 577, 868, 975, 1396
HindII GTYRAC 4 cut(s) 577, 868, 975, 1396
HindIII AAGCTT 2 cut(s) 19, 1124
HpaI GTTAAC 1 cut(s) 577
HpaII CCGG 2 cut(s) 8, 996
HphI GGTGA 8 cut(s) 155, 640, 799, 1717, 1794, 2174, 2216, 2342
Hpy166II GTNNAC 6 cut(s) 241, 577, 868, 975, 1396, 1585
Hpy8I GTNNAC 6 cut(s) 241, 577, 868, 975, 1396, 1585
Hpy99I CGWCG 7 cut(s) 86, 131, 148, 301, 417, 563, 2705
HpyCH4III ACNGT 6 cut(s) 359, 469, 1118, 1436, 2444, 2547
HpyCH4IV ACGT 2 cut(s) 1168, 1416
HpyF10VI GCNNNNNNNGC 7 cut(s) 194, 287, 371, 509, 739, 1703, 1849
HpySE526I ACGT 2 cut(s) 1168, 1416
Hsp92I GRCGYC 4 cut(s) 129, 149, 942, 2700
HspAI GCGC 3 cut(s) 195, 529, 942
KasI GGCGCC 1 cut(s) 941
Kpn2I TCCGGA 1 cut(s) 7
KpnI GGTACC 1 cut(s) 2745
KspAI GTTAAC 1 cut(s) 577
LguI GCTCTTC 4 cut(s) 47, 210, 749, 903
LmnI GCTCC 7 cut(s) 29, 37, 162, 1142, 1457, 1781, 2785
Lsp1109I GCAGC 8 cut(s) 158, 258, 659, 720, 777, 821, 828, 979
LweI GCATC 6 cut(s) 862, 868, 1197, 1243, 1603, 2722
MaeI CTAG 7 cut(s) 371, 947, 1386, 1712, 2085, 2376, 2477
MaeII ACGT 2 cut(s) 1168, 1416
MflI RGATCY 4 cut(s) 4, 2215, 2479, 2725
MhlI GDGCHC 4 cut(s) 42, 99, 467, 1719
MluI ACGCGT 1 cut(s) 294
Mly113I GGCGCC 1 cut(s) 942
MlyI GAGTC 6 cut(s) 176, 248, 427, 602, 1496, 1580
MmeI TCCRAC 9 cut(s) 228, 395, 630, 1014, 1253, 1543, 2078, 2297, 2326
Mph1103I ATGCAT 1 cut(s) 2833
MroI TCCGGA 1 cut(s) 7
MslI CAYNNNNRTG 4 cut(s) 447, 1326, 1712, 2832
MspA1I CMGCKG 4 cut(s) 271, 768, 841, 2241
MspCI CTTAAG 1 cut(s) 2188
MspI CCGG 2 cut(s) 8, 996
MspR9I CCNGG 5 cut(s) 352, 668, 1138, 1190, 2264
Mva1269I GAATGC 3 cut(s) 647, 1387, 1891
MvaI CCWGG 5 cut(s) 352, 668, 1138, 1190, 2264
MvnI CGCG 3 cut(s) 296, 301, 531
MwoI GCNNNNNNNGC 7 cut(s) 194, 287, 371, 509, 739, 1703, 1849
NarI GGCGCC 1 cut(s) 942
NcoI CCATGG 3 cut(s) 1407, 2380, 2491
NdeI CATATG 1 cut(s) 2036
NheI GCTAGC 1 cut(s) 370
NlaIV GGNNCC 8 cut(s) 6, 31, 943, 2459, 2727, 2743, 2781, 2850
NmeAIII GCCGAG 3 cut(s) 164, 189, 592
NmuCI GTSAC 9 cut(s) 61, 392, 628, 787, 1672, 1800, 1985, 2371, 2528
NsiI ATGCAT 1 cut(s) 2833
NspI RCATGY 2 cut(s) 866, 2835
OliI CACNNNNGTG 1 cut(s) 447
PaeR7I CTCGAG 2 cut(s) 377, 1656
PagI TCATGA 1 cut(s) 2590
PaqCI CACCTGC 1 cut(s) 2726
PasI CCCWGGG 1 cut(s) 667
PciI ACATGT 1 cut(s) 862
PciSI GCTCTTC 4 cut(s) 47, 210, 749, 903
PcsI WCGNNNNNNNCGW 4 cut(s) 90, 249, 528, 564
PctI GAATGC 3 cut(s) 647, 1387, 1891
Pfl23II CGTACG 2 cut(s) 335, 1169
PflFI GACNNNGTC 1 cut(s) 148
PfoI TCCNGGA 1 cut(s) 2262
PleI GAGTC 6 cut(s) 176, 248, 426, 602, 1495, 1580
PluTI GGCGCC 1 cut(s) 945
PpsI GAGTC 6 cut(s) 176, 248, 426, 602, 1495, 1580
Ppu21I YACGTR 1 cut(s) 1169
PpuMI RGGWCCY 3 cut(s) 1024, 2266, 2308
PscI ACATGT 1 cut(s) 862
PshAI GACNNNNGTC 1 cut(s) 612
PshBI ATTAAT 1 cut(s) 1248
PsiI TTATAA 1 cut(s) 650
Psp124BI GAGCTC 2 cut(s) 42, 99
Psp5II RGGWCCY 3 cut(s) 1024, 2266, 2308
Psp6I CCWGG 5 cut(s) 350, 666, 1136, 1188, 2262
PspEI GGTNACC 1 cut(s) 628
PspGI CCWGG 5 cut(s) 350, 666, 1136, 1188, 2262
PspLI CGTACG 2 cut(s) 335, 1169
PspN4I GGNNCC 8 cut(s) 6, 31, 943, 2459, 2727, 2743, 2781, 2850
PspPI GGNCC 6 cut(s) 340, 664, 1015, 1024, 2266, 2308
PspPPI RGGWCCY 3 cut(s) 1024, 2266, 2308
PspXI VCTCGAGB 1 cut(s) 377
PstI CTGCAG 1 cut(s) 1854
PsuI RGATCY 4 cut(s) 4, 2215, 2479, 2725
PsyI GACNNNGTC 1 cut(s) 148
PvuII CAGCTG 1 cut(s) 841
RsaI GTAC 7 cut(s) 337, 1171, 1427, 2017, 2680, 2743, 2801
RsaNI GTAC 7 cut(s) 336, 1170, 1426, 2016, 2679, 2742, 2800
RseI CAYNNNNRTG 4 cut(s) 447, 1326, 1712, 2832
SacI GAGCTC 2 cut(s) 42, 99
SapI GCTCTTC 4 cut(s) 47, 210, 749, 903
Sau96I GGNCC 6 cut(s) 340, 664, 1015, 1024, 2266, 2308
ScaI AGTACT 1 cut(s) 1427
SchI GAGTC 6 cut(s) 176, 248, 427, 602, 1496, 1580
ScrFI CCNGG 5 cut(s) 352, 668, 1138, 1190, 2264
SduI GDGCHC 4 cut(s) 42, 99, 467, 1719
SfaNI GCATC 6 cut(s) 862, 868, 1197, 1243, 1603, 2722
SfcI CTRYAG 3 cut(s) 1182, 1617, 1850
SfoI GGCGCC 1 cut(s) 943
Sfr274I CTCGAG 2 cut(s) 377, 1656
SinI GGWCC 4 cut(s) 340, 1024, 2266, 2308
SlaI CTCGAG 2 cut(s) 377, 1656
SmiMI CAYNNNNRTG 4 cut(s) 447, 1326, 1712, 2832
SnaBI TACGTA 1 cut(s) 1169
SspDI GGCGCC 1 cut(s) 941
SspI AATATT 1 cut(s) 1870
SspMI CTAG 7 cut(s) 371, 947, 1386, 1712, 2085, 2376, 2477
SstI GAGCTC 2 cut(s) 42, 99
StyD4I CCNGG 5 cut(s) 350, 666, 1136, 1188, 2262
StyI CCWWGG 4 cut(s) 1407, 2380, 2453, 2491
TaaI ACNGT 6 cut(s) 359, 469, 1118, 1436, 2444, 2547
TaiI ACGT 2 cut(s) 1171, 1419
TaqI TCGA 4 cut(s) 81, 378, 1657, 2022
TatI WGTACW 1 cut(s) 1425
TauI GCSGC 5 cut(s) 126, 271, 284, 566, 2100
TscAI CASTG 9 cut(s) 472, 1587, 1611, 1854, 1990, 2447, 2552, 2671, 2878
TseFI GTSAC 9 cut(s) 61, 392, 628, 787, 1672, 1800, 1985, 2371, 2528
TseI GCWGC 8 cut(s) 171, 271, 672, 733, 765, 809, 841, 992
Tsp45I GTSAC 9 cut(s) 61, 392, 628, 787, 1672, 1800, 1985, 2371, 2528
TspGWI ACGGA 4 cut(s) 353, 574, 1062, 1079
TspRI CASTG 9 cut(s) 472, 1587, 1611, 1854, 1990, 2447, 2552, 2671, 2878
Tth111I GACNNNGTC 1 cut(s) 148
Vha464I CTTAAG 1 cut(s) 2188
VpaK11BI GGWCC 4 cut(s) 340, 1024, 2266, 2308
VspI ATTAAT 1 cut(s) 1248
XagI CCTNNNNNAGG 1 cut(s) 2733
XapI RAATTY 4 cut(s) 694, 889, 1937, 2078
XceI RCATGY 2 cut(s) 866, 2835
XcmI CCANNNNNNNNNTGG 1 cut(s) 430
XhoI CTCGAG 2 cut(s) 377, 1656
XspI CTAG 7 cut(s) 371, 947, 1386, 1712, 2085, 2376, 2477
ZrmI AGTACT 1 cut(s) 1427
Zsp2I ATGCAT 1 cut(s) 2833
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.