Rh2BG621100

OST-HTH/LOTUS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000679
Physical Location & Seq
Forward (+)
84365757 .. 84365990
234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG621100.1

Sequence Viewer

Length: 234 bp
ATGACCCTCCGGCCAAAATTTTCTAGGCCTCAATGCCGACTCCTTCCTACACTCAGAACACCTCACACTCTGTCTTTGTCTACATTCATTGTGAATGTGGGTGATTCAAAGTGTCTTTCAGACCTCTCAAGTGGCAATGGTGGTGATTCAAAGGGTCTTCAGATCCTTTCAACTGGCAGCGGCAGTGATACAAAGTGTATCCAGGACCTTCCAGCTGACAATGATGTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 OST-HTH RRM_1

Protein Analysis

77

Amino Acids

8.18

Weight (kDa)

6.52

Isoelectric Point (pI)

40.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 80
AciI CCGC 1 cut(s) 180
AclWI GGATC 1 cut(s) 157
AcoI YGGCCR 1 cut(s) 11
AcsI RAATTY 1 cut(s) 17
AcuI CTGAAG 1 cut(s) 143
AgsI TTSAA 3 cut(s) 108, 150, 171
AjnI CCWGG 1 cut(s) 201
AluBI AGCT 1 cut(s) 215
AluI AGCT 1 cut(s) 215
AlwI GGATC 1 cut(s) 157
AoxI GGCC 2 cut(s) 11, 26
ApeKI GCWGC 1 cut(s) 177
ApoI RAATTY 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 205
AsuHPI GGTGA 2 cut(s) 113, 155
AvaII GGWCC 1 cut(s) 205
BbsI GAAGAC 1 cut(s) 149
BbvI GCAGC 1 cut(s) 189
BciT130I CCWGG 1 cut(s) 203
BciVI GTATCC 1 cut(s) 209
BfaI CTAG 1 cut(s) 24
BfuI GTATCC 1 cut(s) 209
BisI GCNGC 2 cut(s) 178, 181
BlsI GCNGC 2 cut(s) 179, 182
Bme1390I CCNGG 1 cut(s) 203
Bme18I GGWCC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 205
BmrFI CCNGG 1 cut(s) 203
BpiI GAAGAC 1 cut(s) 149
BpuEI CTTGAG 1 cut(s) 112
Bse1I ACTGG 1 cut(s) 178
Bse3DI GCAATG 1 cut(s) 142
BseBI CCWGG 1 cut(s) 203
BseMI GCAATG 1 cut(s) 142
BseMII CTCAG 1 cut(s) 67
BseNI ACTGG 1 cut(s) 178
BseXI GCAGC 1 cut(s) 189
BshFI GGCC 2 cut(s) 13, 28
BsiSI CCGG 1 cut(s) 10
BsnI GGCC 2 cut(s) 13, 28
Bsp143I GATC 1 cut(s) 162
BspACI CCGC 1 cut(s) 180
BspANI GGCC 2 cut(s) 13, 28
BspCNI CTCAG 1 cut(s) 66
BspPI GGATC 1 cut(s) 157
BsrDI GCAATG 1 cut(s) 142
BsrI ACTGG 1 cut(s) 178
BssMI GATC 1 cut(s) 162
Bst2UI CCWGG 1 cut(s) 203
BstDEI CTNAG 1 cut(s) 53
BstKTI GATC 1 cut(s) 165
BstMBI GATC 1 cut(s) 162
BstNI CCWGG 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 189
BstV2I GAAGAC 1 cut(s) 149
BstX2I RGATCY 1 cut(s) 162
BstYI RGATCY 1 cut(s) 162
BsuI GTATCC 1 cut(s) 209
BsuRI GGCC 2 cut(s) 13, 28
BtsI GCAGTG 1 cut(s) 190
BtsIMutI CAGTG 1 cut(s) 190
Cfr13I GGNCC 1 cut(s) 205
CviJI RGCY 3 cut(s) 13, 28, 215
CviKI_1 RGCY 3 cut(s) 13, 28, 215
DdeI CTNAG 1 cut(s) 53
DpnI GATC 1 cut(s) 164
DpnII GATC 1 cut(s) 162
EaeI YGGCCR 1 cut(s) 11
Eco147I AGGCCT 1 cut(s) 28
Eco47I GGWCC 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 143
EcoO109I RGGNCCY 1 cut(s) 205
EcoRII CCWGG 1 cut(s) 201
FblI GTMKAC 1 cut(s) 80
Fnu4HI GCNGC 2 cut(s) 178, 181
Fsp4HI GCNGC 2 cut(s) 178, 181
FspBI CTAG 1 cut(s) 24
GluI GCNGC 2 cut(s) 178, 181
HaeIII GGCC 2 cut(s) 13, 28
HapII CCGG 1 cut(s) 10
HinfI GANTC 3 cut(s) 39, 104, 146
HpaII CCGG 1 cut(s) 10
HphI GGTGA 2 cut(s) 113, 155
Hpy166II GTNNAC 1 cut(s) 81
Hpy188I TCNGA 3 cut(s) 56, 121, 162
Hpy8I GTNNAC 1 cut(s) 81
HpyAV CCTTC 2 cut(s) 53, 218
HpyF3I CTNAG 1 cut(s) 53
Kzo9I GATC 1 cut(s) 162
LpnPI CCDG 5 cut(s) 23, 159, 188, 215, 225
Lsp1109I GCAGC 1 cut(s) 189
MaeI CTAG 1 cut(s) 24
MalI GATC 1 cut(s) 164
MboI GATC 1 cut(s) 162
MboII GAAGA 1 cut(s) 149
MflI RGATCY 1 cut(s) 162
MluCI AATT 1 cut(s) 17
MlyI GAGTC 1 cut(s) 33
MnlI CCTC 4 cut(s) 17, 39, 72, 134
MseI TTAA 1 cut(s) 232
MspA1I CMGCKG 2 cut(s) 180, 215
MspI CCGG 1 cut(s) 10
MspR9I CCNGG 1 cut(s) 203
MvaI CCWGG 1 cut(s) 203
NdeII GATC 1 cut(s) 162
PceI AGGCCT 1 cut(s) 28
PfeI GAWTC 2 cut(s) 104, 146
PfoI TCCNGGA 1 cut(s) 201
PkrI GCNGC 2 cut(s) 179, 182
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
PpuMI RGGWCCY 1 cut(s) 205
Psp5II RGGWCCY 1 cut(s) 205
Psp6I CCWGG 1 cut(s) 201
PspGI CCWGG 1 cut(s) 201
PspPI GGNCC 1 cut(s) 205
PspPPI RGGWCCY 1 cut(s) 205
PsuI RGATCY 1 cut(s) 162
PvuII CAGCTG 1 cut(s) 215
SaqAI TTAA 1 cut(s) 232
SatI GCNGC 2 cut(s) 178, 181
Sau3AI GATC 1 cut(s) 162
Sau96I GGNCC 1 cut(s) 205
SchI GAGTC 1 cut(s) 33
ScrFI CCNGG 1 cut(s) 203
SetI ASST 4 cut(s) 64, 126, 210, 217
SgeI CNNG 7 cut(s) 22, 36, 141, 186, 214, 215, 224
SinI GGWCC 1 cut(s) 205
SmlI CTYRAG 1 cut(s) 127
SmoI CTYRAG 1 cut(s) 127
Sse9I AATT 1 cut(s) 17
SseBI AGGCCT 1 cut(s) 28
SsiI CCGC 1 cut(s) 180
SspMI CTAG 1 cut(s) 24
StuI AGGCCT 1 cut(s) 28
StyD4I CCNGG 1 cut(s) 201
TasI AATT 1 cut(s) 17
TauI GCSGC 1 cut(s) 183
TfiI GAWTC 2 cut(s) 104, 146
Tru1I TTAA 1 cut(s) 232
Tru9I TTAA 1 cut(s) 232
TscAI CASTG 1 cut(s) 190
TseI GCWGC 1 cut(s) 177
TspDTI ATGAA 1 cut(s) 76
TspRI CASTG 1 cut(s) 190
VpaK11BI GGWCC 1 cut(s) 205
XapI RAATTY 1 cut(s) 17
XmiI GTMKAC 1 cut(s) 80
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.