Rorug05G0519800

ankyrin repeats

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000679
Physical Location & Seq
Forward (+)
70405069 .. 70409373
4305 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0519800.1

Sequence Viewer

Length: 1521 bp
ATGGAATACATCTTCTTGTACGCATCTCTGTCCATCATTGTGTGTGTGCTCATCTTTCTAAAGCTATTTGGATGGCAGCGTTATCCCAACCTCCCTCCAAGCCCTTCTTTATCTATTCCGATACTTCGCCACCTCCACCTTTTCAAACCCCCAATTCACCGCACCTTCCACCACCTCTCGCAGAAACACGGCCCCATCTTCTCCCTTTGGTTAGGCTCCCACCGCATGGTCATTATCTCCTCCTCCTCAGCCGTGCAAGAATGCTTCACCAAAAATGACATCGTGTTGGCAAACCGTCCCCCCTCGCTCATAAGTAAGCACTTTGGGTACAATCAAACCACCATGTTGACCTCCCCCTATGGCAATCACTGGCGCAACGTTCGCCGTATCGGCACTGTTGAGGTCTTGTCCACTGGCCGACTCAACACGTTCTCCGATGTCCGAAAAGACGAAGTCAAGCATTTGCTGCGCAAGCTTTCCCAAATCACAAGGGAAGGTTGTTTTGTGAAAGTGGAACTGAGCTCTATGTTCTATGAGCTGACCTTTAACAACATAATGACAATGGTCGCAGGGAAGAGGTTCGTTGGGGACGATGTTTCGGACAAGGAAATGGGGAAGGAGTTCATTGAGATCATGAACGAGACTCTCTTGTATGGTGGGGGAACCAACCTCGGAGAATACATTCCCTTTCTCAATTGGTTTAGCAGTAGTGGTTTTGAAGAGAAGGTGAAAAAGTTGGCCAAGAGAGGAGATGCGTTCTTTCAATGTCTGATTGATGAACACAAGAACAAGAATGCCTTAGAGAGTAAAAATACCATGATCGACCATTTGCTTTTCCAGCAGGAGTCAAAGCCACAATATTACACCGATGAGATTATCAAAGGACTTATACAGGTTTTATTATTGGCGGGCACGGATACATCTGCAGTGACATTAGAATGGGCCATGTCCAATTTGCTAAACCATCCAGATGTGTTAAAGAAGGCTAGAGCTGAATTGGATGCTCAGATTGGTAAAGAACGCTTAGTAGACGAATCAGACCTCTCCAATCTTCACTACTTACAAAGTATCATCTCTGAGACTCTTCGGTTGTACCCGGCAGTACCAATGCTAGTACCACATTTTGCATCTGATAATTGCGTTGTTGGCGGATTCGATATACCACGTAACACAAAGGTATTGGTCAATGCTTGGGCCATACATAGAGACTCGAAGTTATGGGATGATCCTGAAAGCTTCAAACCTGAGAGGTTTGAAACTGGTAACAAGGATGAGGCACACAAACTTATACCGTTTGGAATGGGAAGAAGGGCTTGTCCTGGAGTAGGCTTGGCCCAACGTGAGGTGGGATTGACTTTGGCTTCACTGATTCAATGTATTGACTGGGAGAGGGTTAGTGAGGAGAACGTTGATATGACTGAATTAGGAAAAGGAGTCACCATGCATAAACTTCTACCATTAGAGGTCATGTGCAAACCACGCTCATTTTTGAACAATGTGGTTCATTTATTCAACGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 OST-HTH RRM_1

Protein Analysis

506

Amino Acids

57.69

Weight (kDa)

7.31

Isoelectric Point (pI)

36.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 33 - 483 4e-98 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 470
AccB7I CCANNNNNTGG 1 cut(s) 226
AccI GTMKAC 1 cut(s) 1029
AciI CCGC 4 cut(s) 160, 223, 908, 1149
AclI AACGTT 2 cut(s) 378, 1407
AclWI GGATC 1 cut(s) 1220
AcoI YGGCCR 2 cut(s) 415, 738
AfaI GTAC 5 cut(s) 20, 329, 1094, 1104, 1116
AfiI CCNNNNNNNGG 3 cut(s) 226, 1325, 1342
AflIII ACRYGT 1 cut(s) 426
AgsI TTSAA 8 cut(s) 145, 719, 764, 1240, 1256, 1373, 1492, 1513
AjnI CCWGG 1 cut(s) 1318
AluBI AGCT 6 cut(s) 64, 475, 522, 538, 992, 1236
AluI AGCT 6 cut(s) 64, 475, 522, 538, 992, 1236
Alw21I GWGCWC 2 cut(s) 51, 524
Alw26I GTCTC 3 cut(s) 635, 1073, 1200
AlwI GGATC 1 cut(s) 1220
AoxI GGCC 6 cut(s) 190, 415, 738, 942, 1194, 1332
ApeKI GCWGC 2 cut(s) 76, 466
Asp700I GAANNNNTTC 3 cut(s) 578, 620, 681
AspLEI GCGC 2 cut(s) 375, 471
AspS9I GGNCC 4 cut(s) 191, 942, 1194, 1333
AsuC2I CCSGG 1 cut(s) 1097
AsuHPI GGTGA 4 cut(s) 149, 259, 739, 1429
BaeGI GKGCMC 1 cut(s) 914
BalI TGGCCA 1 cut(s) 740
BanII GRGCYC 1 cut(s) 524
Bbv12I GWGCWC 2 cut(s) 51, 524
BbvCI CCTCAGC 1 cut(s) 247
BbvI GCAGC 2 cut(s) 88, 453
BccI CCATC 4 cut(s) 41, 66, 203, 972
BceAI ACGGC 3 cut(s) 205, 236, 369
BciT130I CCWGG 1 cut(s) 1320
BciVI GTATCC 1 cut(s) 910
BcnI CCSGG 1 cut(s) 1097
BcoDI GTCTC 3 cut(s) 635, 1073, 1200
BfaI CTAG 2 cut(s) 987, 1112
BfmI CTRYAG 1 cut(s) 924
BfuI GTATCC 1 cut(s) 910
BglI GCCNNNNNGGC 1 cut(s) 390
BisI GCNGC 2 cut(s) 77, 467
BlsI GCNGC 2 cut(s) 78, 468
Bme1390I CCNGG 2 cut(s) 1097, 1320
BmgT120I GGNCC 4 cut(s) 191, 942, 1194, 1333
BmiI GGNNCC 3 cut(s) 193, 217, 664
BmrFI CCNGG 2 cut(s) 1097, 1320
BmrI ACTGGG 1 cut(s) 1393
BmsI GCATC 4 cut(s) 32, 742, 991, 1136
BmuI ACTGGG 1 cut(s) 1393
BoxI GACNNNNGTC 1 cut(s) 563
BpmI CTGGAG 1 cut(s) 1341
Bpu10I CCTNAGC 1 cut(s) 247
BpuMI CCSGG 1 cut(s) 1097
BsaAI YACGTR 1 cut(s) 1166
BsaJI CCNNGG 1 cut(s) 670
BsaXI ACNNNNNCTCC 2 cut(s) 416, 446
Bsc4I CCNNNNNNNGG 3 cut(s) 226, 1325, 1342
Bse1I ACTGG 4 cut(s) 374, 418, 1264, 1388
BseBI CCWGG 1 cut(s) 1320
BseDI CCNNGG 1 cut(s) 670
BseGI GGATG 5 cut(s) 77, 964, 1006, 1228, 1276
BseLI CCNNNNNNNGG 3 cut(s) 226, 1325, 1342
BseMII CTCAG 5 cut(s) 261, 509, 1019, 1068, 1236
BseNI ACTGG 4 cut(s) 374, 418, 1264, 1388
BseRI GAGGAG 5 cut(s) 229, 232, 235, 762, 1415
BseSI GKGCMC 1 cut(s) 914
BseXI GCAGC 2 cut(s) 88, 453
BshFI GGCC 6 cut(s) 192, 417, 740, 944, 1196, 1334
BsiHKAI GWGCWC 2 cut(s) 51, 524
BsiSI CCGG 1 cut(s) 1097
BslFI GGGAC 2 cut(s) 282, 602
BslI CCNNNNNNNGG 3 cut(s) 226, 1325, 1342
BsmAI GTCTC 3 cut(s) 635, 1073, 1200
BsmFI GGGAC 2 cut(s) 282, 602
BsmI GAATGC 2 cut(s) 266, 799
BsnI GGCC 6 cut(s) 192, 417, 740, 944, 1196, 1334
Bsp1286I GDGCHC 3 cut(s) 51, 524, 914
Bsp143I GATC 3 cut(s) 630, 819, 1225
BspACI CCGC 4 cut(s) 160, 223, 908, 1149
BspANI GGCC 6 cut(s) 192, 417, 740, 944, 1196, 1334
BspCNI CTCAG 5 cut(s) 260, 510, 1018, 1069, 1237
BspHI TCATGA 1 cut(s) 633
BspLI GGNNCC 3 cut(s) 193, 217, 664
BspMAI CTGCAG 1 cut(s) 928
BspPI GGATC 1 cut(s) 1220
BsrI ACTGG 4 cut(s) 374, 418, 1264, 1388
BssECI CCNNGG 1 cut(s) 670
BssMI GATC 3 cut(s) 630, 819, 1225
Bst2UI CCWGG 1 cut(s) 1320
Bst4CI ACNGT 3 cut(s) 296, 397, 1293
Bst6I CTCTTC 3 cut(s) 569, 714, 1089
BstAPI GCANNNNNTGC 1 cut(s) 466
BstBAI YACGTR 1 cut(s) 1166
BstC8I GCNNGC 2 cut(s) 473, 910
BstDEI CTNAG 7 cut(s) 247, 518, 799, 1005, 1024, 1077, 1245
BstENI CCTNNNNNAGG 1 cut(s) 1323
BstF5I GGATG 5 cut(s) 77, 964, 1006, 1228, 1276
BstHHI GCGC 2 cut(s) 375, 471
BstKTI GATC 3 cut(s) 633, 822, 1228
BstMAI GTCTC 3 cut(s) 635, 1073, 1200
BstMBI GATC 3 cut(s) 630, 819, 1225
BstMWI GCNNNNNNNGC 8 cut(s) 222, 381, 390, 466, 472, 838, 1146, 1479
BstNI CCWGG 1 cut(s) 1320
BstPAI GACNNNNGTC 1 cut(s) 563
BstSCI CCNGG 2 cut(s) 1095, 1318
BstSFI CTRYAG 1 cut(s) 924
BstSLI GKGCMC 1 cut(s) 914
BstV1I GCAGC 2 cut(s) 88, 453
BsuI GTATCC 1 cut(s) 910
BsuRI GGCC 6 cut(s) 192, 417, 740, 944, 1196, 1334
BtsCI GGATG 5 cut(s) 77, 964, 1006, 1228, 1276
BtsI GCAGTG 1 cut(s) 933
BtsIMutI CAGTG 5 cut(s) 367, 393, 411, 933, 1364
Cac8I GCNNGC 2 cut(s) 473, 910
CciI TCATGA 1 cut(s) 633
CfoI GCGC 2 cut(s) 375, 471
Cfr13I GGNCC 4 cut(s) 191, 942, 1194, 1333
Csp6I GTAC 5 cut(s) 19, 328, 1093, 1103, 1115
CviAII CATG 7 cut(s) 226, 343, 634, 817, 946, 1441, 1468
CviQI GTAC 5 cut(s) 19, 328, 1093, 1103, 1115
DdeI CTNAG 7 cut(s) 247, 518, 799, 1005, 1024, 1077, 1245
DpnI GATC 3 cut(s) 632, 821, 1227
DpnII GATC 3 cut(s) 630, 819, 1225
EaeI YGGCCR 2 cut(s) 415, 738
Eam1104I CTCTTC 3 cut(s) 569, 714, 1089
EarI CTCTTC 3 cut(s) 569, 714, 1089
EciI GGCGGA 1 cut(s) 1164
Ecl136II GAGCTC 1 cut(s) 522
Eco24I GRGCYC 1 cut(s) 524
Eco53kI GAGCTC 1 cut(s) 522
EcoICRI GAGCTC 1 cut(s) 522
EcoNI CCTNNNNNAGG 1 cut(s) 1323
EcoRII CCWGG 1 cut(s) 1318
EcoT22I ATGCAT 1 cut(s) 1446
EcoT38I GRGCYC 1 cut(s) 524
FaeI CATG 7 cut(s) 229, 346, 637, 820, 949, 1444, 1471
FalI AAGNNNNNCTT 6 cut(s) 91, 123, 782, 814, 1297, 1329
FaqI GGGAC 2 cut(s) 282, 602
FatI CATG 7 cut(s) 225, 342, 633, 816, 945, 1440, 1467
FauI CCCGC 1 cut(s) 901
FblI GTMKAC 1 cut(s) 1029
Fnu4HI GCNGC 2 cut(s) 77, 467
FokI GGATG 5 cut(s) 84, 951, 1013, 1235, 1283
FriOI GRGCYC 1 cut(s) 524
Fsp4HI GCNGC 2 cut(s) 77, 467
FspBI CTAG 2 cut(s) 987, 1112
FspI TGCGCA 1 cut(s) 470
GlaI GCGC 2 cut(s) 374, 470
GluI GCNGC 2 cut(s) 77, 467
GsuI CTGGAG 1 cut(s) 1341
HaeIII GGCC 6 cut(s) 192, 417, 740, 944, 1196, 1334
HapII CCGG 1 cut(s) 1097
HhaI GCGC 2 cut(s) 375, 471
Hin1II CATG 7 cut(s) 229, 346, 637, 820, 949, 1444, 1471
Hin6I GCGC 2 cut(s) 373, 469
HinP1I GCGC 2 cut(s) 373, 469
HincII GTYRAC 1 cut(s) 348
HindII GTYRAC 1 cut(s) 348
HindIII AAGCTT 2 cut(s) 473, 1234
HinfI GANTC 9 cut(s) 420, 643, 845, 1034, 1081, 1152, 1208, 1369, 1434
HpaII CCGG 1 cut(s) 1097
HphI GGTGA 4 cut(s) 149, 259, 739, 1429
Hpy166II GTNNAC 3 cut(s) 348, 411, 1030
Hpy188III TCNNGA 3 cut(s) 634, 968, 1229
Hpy8I GTNNAC 3 cut(s) 348, 411, 1030
HpyAV CCTTC 7 cut(s) 114, 175, 488, 610, 718, 976, 1302
HpyCH4III ACNGT 3 cut(s) 296, 397, 1293
HpyCH4IV ACGT 5 cut(s) 378, 428, 1165, 1339, 1407
HpyCH4V TGCA 5 cut(s) 256, 926, 1127, 1444, 1473
HpyF10VI GCNNNNNNNGC 8 cut(s) 222, 381, 390, 466, 472, 838, 1146, 1479
HpyF3I CTNAG 7 cut(s) 247, 518, 799, 1005, 1024, 1077, 1245
HpySE526I ACGT 5 cut(s) 378, 428, 1165, 1339, 1407
Hsp92II CATG 7 cut(s) 229, 346, 637, 820, 949, 1444, 1471
HspAI GCGC 2 cut(s) 373, 469
Kzo9I GATC 3 cut(s) 630, 819, 1225
LmnI GCTCC 1 cut(s) 221
Lsp1109I GCAGC 2 cut(s) 88, 453
LweI GCATC 4 cut(s) 32, 742, 991, 1136
MaeI CTAG 2 cut(s) 987, 1112
MaeII ACGT 5 cut(s) 378, 428, 1165, 1339, 1407
MaeIII GTNAC 4 cut(s) 928, 1166, 1262, 1435
MalI GATC 3 cut(s) 632, 821, 1227
MboI GATC 3 cut(s) 630, 819, 1225
MboII GAAGA 7 cut(s) 4, 190, 586, 731, 1043, 1076, 1317
MfeI CAATTG 1 cut(s) 694
MhlI GDGCHC 3 cut(s) 51, 524, 914
MlsI TGGCCA 1 cut(s) 740
MluCI AATT 6 cut(s) 153, 694, 952, 995, 1135, 1421
MluNI TGGCCA 1 cut(s) 740
MlyI GAGTC 6 cut(s) 414, 637, 854, 1075, 1202, 1443
Mox20I TGGCCA 1 cut(s) 740
Mph1103I ATGCAT 1 cut(s) 1446
MroXI GAANNNNTTC 3 cut(s) 578, 620, 681
MscI TGGCCA 1 cut(s) 740
MseI TTAA 2 cut(s) 546, 977
MslI CAYNNNNRTG 3 cut(s) 38, 937, 969
Msp20I TGGCCA 1 cut(s) 740
MspI CCGG 1 cut(s) 1097
MspR9I CCNGG 2 cut(s) 1097, 1320
MunI CAATTG 1 cut(s) 694
Mva1269I GAATGC 2 cut(s) 266, 799
MvaI CCWGG 1 cut(s) 1320
MwoI GCNNNNNNNGC 8 cut(s) 222, 381, 390, 466, 472, 838, 1146, 1479
NciI CCSGG 1 cut(s) 1097
NdeII GATC 3 cut(s) 630, 819, 1225
NlaIII CATG 7 cut(s) 229, 346, 637, 820, 949, 1444, 1471
NlaIV GGNNCC 3 cut(s) 193, 217, 664
NmuCI GTSAC 2 cut(s) 928, 1435
NsbI TGCGCA 1 cut(s) 470
NsiI ATGCAT 1 cut(s) 1446
PagI TCATGA 1 cut(s) 633
PcsI WCGNNNNNNNCGW 1 cut(s) 588
PctI GAATGC 2 cut(s) 266, 799
PdmI GAANNNNTTC 3 cut(s) 578, 620, 681
PfeI GAWTC 3 cut(s) 1034, 1152, 1369
PflFI GACNNNGTC 1 cut(s) 452
PflMI CCANNNNNTGG 1 cut(s) 226
PfoI TCCNGGA 1 cut(s) 1318
PkrI GCNGC 2 cut(s) 78, 468
PleI GAGTC 6 cut(s) 414, 637, 853, 1075, 1202, 1442
PpsI GAGTC 6 cut(s) 414, 637, 853, 1075, 1202, 1442
Ppu21I YACGTR 1 cut(s) 1166
PshAI GACNNNNGTC 1 cut(s) 563
Psp124BI GAGCTC 1 cut(s) 524
Psp1406I AACGTT 2 cut(s) 378, 1407
Psp6I CCWGG 1 cut(s) 1318
PspGI CCWGG 1 cut(s) 1318
PspN4I GGNNCC 3 cut(s) 193, 217, 664
PspPI GGNCC 4 cut(s) 191, 942, 1194, 1333
PstI CTGCAG 1 cut(s) 928
PsyI GACNNNGTC 1 cut(s) 452
RsaI GTAC 5 cut(s) 20, 329, 1094, 1104, 1116
RsaNI GTAC 5 cut(s) 19, 328, 1093, 1103, 1115
RseI CAYNNNNRTG 3 cut(s) 38, 937, 969
SacI GAGCTC 1 cut(s) 524
SaqAI TTAA 2 cut(s) 546, 977
SatI GCNGC 2 cut(s) 77, 467
Sau3AI GATC 3 cut(s) 630, 819, 1225
Sau96I GGNCC 4 cut(s) 191, 942, 1194, 1333
SchI GAGTC 6 cut(s) 414, 637, 854, 1075, 1202, 1443
ScrFI CCNGG 2 cut(s) 1097, 1320
SduI GDGCHC 3 cut(s) 51, 524, 914
SfaNI GCATC 4 cut(s) 32, 742, 991, 1136
SfcI CTRYAG 1 cut(s) 924
SmiMI CAYNNNNRTG 3 cut(s) 38, 937, 969
Sse9I AATT 6 cut(s) 153, 694, 952, 995, 1135, 1421
SsiI CCGC 4 cut(s) 160, 223, 908, 1149
SspI AATATT 1 cut(s) 860
SspMI CTAG 2 cut(s) 987, 1112
SstI GAGCTC 1 cut(s) 524
StyD4I CCNGG 2 cut(s) 1095, 1318
TaaI ACNGT 3 cut(s) 296, 397, 1293
TaiI ACGT 5 cut(s) 381, 431, 1168, 1342, 1410
TaqI TCGA 3 cut(s) 822, 1155, 1211
TasI AATT 6 cut(s) 153, 694, 952, 995, 1135, 1421
TfiI GAWTC 3 cut(s) 1034, 1152, 1369
Tru1I TTAA 2 cut(s) 546, 977
Tru9I TTAA 2 cut(s) 546, 977
TscAI CASTG 5 cut(s) 374, 400, 418, 933, 1371
TseFI GTSAC 2 cut(s) 928, 1435
TseI GCWGC 2 cut(s) 76, 466
Tsp45I GTSAC 2 cut(s) 928, 1435
TspDTI ATGAA 4 cut(s) 613, 650, 792, 1493
TspGWI ACGGA 1 cut(s) 929
TspRI CASTG 5 cut(s) 374, 400, 418, 933, 1371
Tth111I GACNNNGTC 1 cut(s) 452
Van91I CCANNNNNTGG 1 cut(s) 226
XagI CCTNNNNNAGG 1 cut(s) 1323
XmiI GTMKAC 1 cut(s) 1029
XmnI GAANNNNTTC 3 cut(s) 578, 620, 681
XspI CTAG 2 cut(s) 987, 1112
Zsp2I ATGCAT 1 cut(s) 1446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.