OST-HTH/LOTUS domain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Ank_2 | PF12796 | 129 - 198 | 3.7e-07 | Ankyrin repeats (3 copies) |
| Ank_4 | PF13637 | 181 - 221 | 5.7e-06 | Ankyrin repeats (many copies) |
| Ank_2 | PF12796 | 182 - 260 | 4.2e-11 | Ankyrin repeats (3 copies) |
| Ank_5 | PF13857 | 187 - 239 | 7.5e-06 | Ankyrin repeats (many copies) |
| RRM_1 | PF00076 | 375 - 446 | 9e-14 | RNA recognition motif |
| OST-HTH | PF12872 | 542 - 587 | 2.4e-06 | OST-HTH/LOTUS domain |
| zf-C3HC4_3 | PF13920 | 832 - 883 | 2.3e-06 | Zinc finger, C3HC4 type (RING finger) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 2048 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2979 |
| AccBSI | CCGCTC | 1 cut(s) | 918 |
| AccI | GTMKAC | 1 cut(s) | 1632 |
| AccIII | TCCGGA | 1 cut(s) | 2873 |
| AclWI | GGATC | 9 cut(s) | 497, 510, 1051, 1064, 1217, 1753, 2250, 2347, 2828 |
| AcoI | YGGCCR | 1 cut(s) | 787 |
| AcsI | RAATTY | 4 cut(s) | 1006, 1969, 2225, 3005 |
| AcuI | CTGAAG | 3 cut(s) | 875, 1019, 1683 |
| AcyI | GRCGYC | 3 cut(s) | 87, 380, 1233 |
| AdeI | CACNNNGTG | 3 cut(s) | 1601, 1675, 2800 |
| AfaI | GTAC | 6 cut(s) | 433, 623, 1462, 1547, 3192, 3210 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 241, 766, 1216, 1878, 2027, 2979 |
| AflII | CTTAAG | 1 cut(s) | 416 |
| AflIII | ACRYGT | 1 cut(s) | 390 |
| AjiI | CACGTC | 1 cut(s) | 616 |
| AjnI | CCWGG | 1 cut(s) | 540 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 1212, 1244, 1725, 1757, 2056, 2088 |
| AleI | CACNNNNGTG | 1 cut(s) | 555 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 512, 544 |
| Alw21I | GWGCWC | 5 cut(s) | 39, 198, 575, 1129, 2805 |
| Alw26I | GTCTC | 4 cut(s) | 146, 868, 1614, 2597 |
| Alw44I | GTGCAC | 1 cut(s) | 2801 |
| AlwI | GGATC | 9 cut(s) | 497, 510, 1051, 1064, 1217, 1753, 2250, 2347, 2828 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3228 |
| Ama87I | CYCGRG | 2 cut(s) | 317, 1128 |
| Aor13HI | TCCGGA | 1 cut(s) | 2873 |
| AoxI | GGCC | 5 cut(s) | 147, 777, 787, 2375, 3084 |
| ApaLI | GTGCAC | 1 cut(s) | 2801 |
| ApeKI | GCWGC | 8 cut(s) | 267, 367, 664, 886, 959, 991, 1175, 3067 |
| ApoI | RAATTY | 4 cut(s) | 1006, 1969, 2225, 3005 |
| AseI | ATTAAT | 1 cut(s) | 2928 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 131, 2288 |
| AspLEI | GCGC | 7 cut(s) | 31, 293, 388, 430, 664, 824, 1526 |
| AsuC2I | CCSGG | 1 cut(s) | 355 |
| AsuII | TTCGAA | 1 cut(s) | 2543 |
| AsuNHI | GCTAGC | 1 cut(s) | 466 |
| AvaI | CYCGRG | 2 cut(s) | 317, 1128 |
| AvaII | GGWCC | 7 cut(s) | 232, 444, 1207, 2107, 2515, 2641, 2683 |
| AxyI | CCTNAGG | 1 cut(s) | 440 |
| BaeGI | GKGCMC | 2 cut(s) | 1861, 2805 |
| BamHI | GGATCC | 2 cut(s) | 502, 1056 |
| BanII | GRGCYC | 2 cut(s) | 39, 198 |
| BbsI | GAAGAC | 7 cut(s) | 90, 543, 1007, 1491, 1889, 2064, 2498 |
| Bbv12I | GWGCWC | 5 cut(s) | 39, 198, 575, 1129, 2805 |
| BbvCI | CCTCAGC | 1 cut(s) | 806 |
| BbvI | GCAGC | 8 cut(s) | 254, 354, 651, 873, 946, 978, 1162, 3079 |
| BccI | CCATC | 1 cut(s) | 2480 |
| BceAI | ACGGC | 9 cut(s) | 94, 258, 390, 617, 675, 774, 846, 1479, 2963 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 49, 83 |
| BciT130I | CCWGG | 1 cut(s) | 542 |
| BciVI | GTATCC | 1 cut(s) | 2772 |
| BclI | TGATCA | 2 cut(s) | 162, 1117 |
| BcnI | CCSGG | 1 cut(s) | 355 |
| BcoDI | GTCTC | 4 cut(s) | 146, 868, 1614, 2597 |
| BfaI | CTAG | 3 cut(s) | 467, 1800, 2730 |
| BfmI | CTRYAG | 3 cut(s) | 1365, 1761, 2778 |
| BfoI | RGCGCY | 3 cut(s) | 32, 665, 1527 |
| BfrI | CTTAAG | 1 cut(s) | 416 |
| BfuI | GTATCC | 1 cut(s) | 2772 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 830 |
| BglII | AGATCT | 1 cut(s) | 1369 |
| BlpI | GCTNAGC | 1 cut(s) | 1305 |
| BmcAI | AGTACT | 2 cut(s) | 1547, 3210 |
| Bme1390I | CCNGG | 2 cut(s) | 355, 542 |
| Bme18I | GGWCC | 7 cut(s) | 232, 444, 1207, 2107, 2515, 2641, 2683 |
| BmeT110I | CYCGRG | 2 cut(s) | 317, 1128 |
| BmgBI | CACGTC | 1 cut(s) | 616 |
| BmiI | GGNNCC | 6 cut(s) | 51, 327, 504, 1058, 2109, 2813 |
| BmrFI | CCNGG | 2 cut(s) | 355, 542 |
| BmrI | ACTGGG | 1 cut(s) | 2806 |
| BmsI | GCATC | 6 cut(s) | 719, 1018, 1747, 2304, 2947, 2959 |
| BmtI | GCTAGC | 1 cut(s) | 470 |
| BmuI | ACTGGG | 1 cut(s) | 2806 |
| BpiI | GAAGAC | 7 cut(s) | 90, 543, 1007, 1491, 1889, 2064, 2498 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2954, 2986 |
| BpmI | CTGGAG | 2 cut(s) | 494, 1504 |
| Bpu10I | CCTNAGC | 2 cut(s) | 806, 963 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1305 |
| Bpu14I | TTCGAA | 1 cut(s) | 2543 |
| BpuEI | CTTGAG | 6 cut(s) | 1223, 1368, 2070, 2573, 2657, 2704 |
| BpuMI | CCSGG | 1 cut(s) | 355 |
| BsaHI | GRCGYC | 3 cut(s) | 87, 380, 1233 |
| BsaWI | WCCGGW | 1 cut(s) | 2873 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 278, 308, 512, 542, 2373, 2403 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 241, 766, 1216, 1878, 2027, 2979 |
| Bse118I | RCCGGY | 1 cut(s) | 221 |
| Bse1I | ACTGG | 2 cut(s) | 1226, 2801 |
| Bse21I | CCTNAGG | 1 cut(s) | 440 |
| Bse3DI | GCAATG | 1 cut(s) | 1400 |
| BseAI | TCCGGA | 1 cut(s) | 2873 |
| BseBI | CCWGG | 1 cut(s) | 542 |
| BseGI | GGATG | 6 cut(s) | 734, 951, 1571, 2179, 2791, 2938 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 241, 766, 1216, 1878, 2027, 2979 |
| BseMI | GCAATG | 1 cut(s) | 1400 |
| BseNI | ACTGG | 2 cut(s) | 1226, 2801 |
| BseRI | GAGGAG | 5 cut(s) | 245, 286, 984, 1590, 1619 |
| BseSI | GKGCMC | 2 cut(s) | 1861, 2805 |
| BseX3I | CGGCCG | 1 cut(s) | 787 |
| BseXI | GCAGC | 8 cut(s) | 254, 354, 651, 873, 946, 978, 1162, 3079 |
| BsgI | GTGCAG | 2 cut(s) | 353, 2923 |
| Bsh1285I | CGRYCG | 2 cut(s) | 144, 790 |
| BshFI | GGCC | 5 cut(s) | 149, 779, 789, 2377, 3086 |
| BsiEI | CGRYCG | 2 cut(s) | 144, 790 |
| BsiHKAI | GWGCWC | 5 cut(s) | 39, 198, 575, 1129, 2805 |
| BsiHKCI | CYCGRG | 2 cut(s) | 317, 1128 |
| BsiSI | CCGG | 4 cut(s) | 32, 222, 354, 2874 |
| BsiWI | CGTACG | 1 cut(s) | 621 |
| BslFI | GGGAC | 2 cut(s) | 2893, 2950 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 241, 766, 1216, 1878, 2027, 2979 |
| BsmAI | GTCTC | 4 cut(s) | 146, 868, 1614, 2597 |
| BsmBI | CGTCTC | 1 cut(s) | 146 |
| BsmFI | GGGAC | 2 cut(s) | 2893, 2950 |
| BsmI | GAATGC | 1 cut(s) | 761 |
| BsnI | GGCC | 5 cut(s) | 149, 779, 789, 2377, 3086 |
| BsoBI | CYCGRG | 2 cut(s) | 317, 1128 |
| Bsp119I | TTCGAA | 1 cut(s) | 2543 |
| Bsp1286I | GDGCHC | 6 cut(s) | 39, 198, 575, 1129, 1861, 2805 |
| Bsp13I | TCCGGA | 1 cut(s) | 2873 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1305 |
| Bsp19I | CCATGG | 2 cut(s) | 2053, 2734 |
| Bsp68I | TCGCGA | 1 cut(s) | 107 |
| BspANI | GGCC | 5 cut(s) | 149, 779, 789, 2377, 3086 |
| BspEI | TCCGGA | 1 cut(s) | 2873 |
| BspLI | GGNNCC | 6 cut(s) | 51, 327, 504, 1058, 2109, 2813 |
| BspMAI | CTGCAG | 1 cut(s) | 2782 |
| BspOI | GCTAGC | 1 cut(s) | 470 |
| BspPI | GGATC | 9 cut(s) | 497, 510, 1051, 1064, 1217, 1753, 2250, 2347, 2828 |
| BspQI | GCTCTTC | 2 cut(s) | 44, 1053 |
| BspT104I | TTCGAA | 1 cut(s) | 2543 |
| BspTI | CTTAAG | 1 cut(s) | 416 |
| BsrBI | CCGCTC | 1 cut(s) | 918 |
| BsrDI | GCAATG | 1 cut(s) | 1400 |
| BsrFI | RCCGGY | 1 cut(s) | 221 |
| BsrI | ACTGG | 2 cut(s) | 1226, 2801 |
| BssAI | RCCGGY | 1 cut(s) | 221 |
| BssNI | GRCGYC | 3 cut(s) | 87, 380, 1233 |
| BssT1I | CCWWGG | 6 cut(s) | 447, 600, 1527, 2053, 2734, 2807 |
| Bst2UI | CCWGG | 1 cut(s) | 542 |
| Bst6I | CTCTTC | 4 cut(s) | 44, 1053, 1731, 2203 |
| BstACI | GRCGYC | 3 cut(s) | 87, 380, 1233 |
| BstAFI | CTTAAG | 1 cut(s) | 416 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3076 |
| BstBI | TTCGAA | 1 cut(s) | 2543 |
| BstDSI | CCRYGG | 5 cut(s) | 240, 678, 828, 2053, 2734 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2025 |
| BstF5I | GGATG | 6 cut(s) | 734, 951, 1571, 2179, 2791, 2938 |
| BstH2I | RGCGCY | 3 cut(s) | 32, 665, 1527 |
| BstHHI | GCGC | 7 cut(s) | 31, 293, 388, 430, 664, 824, 1526 |
| BstMAI | GTCTC | 4 cut(s) | 146, 868, 1614, 2597 |
| BstMCI | CGRYCG | 2 cut(s) | 144, 790 |
| BstNI | CCWGG | 1 cut(s) | 542 |
| BstNSI | RCATGY | 1 cut(s) | 3063 |
| BstSCI | CCNGG | 2 cut(s) | 353, 540 |
| BstSFI | CTRYAG | 3 cut(s) | 1365, 1761, 2778 |
| BstSLI | GKGCMC | 2 cut(s) | 1861, 2805 |
| BstV1I | GCAGC | 8 cut(s) | 254, 354, 651, 873, 946, 978, 1162, 3079 |
| BstV2I | GAAGAC | 7 cut(s) | 90, 543, 1007, 1491, 1889, 2064, 2498 |
| BstX2I | RGATCY | 5 cut(s) | 502, 1056, 1222, 1369, 2833 |
| BstYI | RGATCY | 5 cut(s) | 502, 1056, 1222, 1369, 2833 |
| BstZI | CGGCCG | 1 cut(s) | 787 |
| Bsu36I | CCTNAGG | 1 cut(s) | 440 |
| BsuI | GTATCC | 1 cut(s) | 2772 |
| BsuRI | GGCC | 5 cut(s) | 149, 779, 789, 2377, 3086 |
| BtgI | CCRYGG | 5 cut(s) | 240, 678, 828, 2053, 2734 |
| BtrI | CACGTC | 1 cut(s) | 616 |
| BtsCI | GGATG | 6 cut(s) | 734, 951, 1571, 2179, 2791, 2938 |
| BtsI | GCAGTG | 2 cut(s) | 1497, 2704 |
| BtuMI | TCGCGA | 1 cut(s) | 107 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3228 |
| CfoI | GCGC | 7 cut(s) | 31, 293, 388, 430, 664, 824, 1526 |
| Cfr10I | RCCGGY | 1 cut(s) | 221 |
| Cfr42I | CCGCGG | 1 cut(s) | 681 |
| CseI | GACGC | 6 cut(s) | 95, 369, 381, 688, 1031, 1222 |
| CsiI | ACCWGGT | 1 cut(s) | 540 |
| Csp6I | GTAC | 6 cut(s) | 432, 622, 1461, 1546, 3191, 3209 |
| CviQI | GTAC | 6 cut(s) | 432, 622, 1461, 1546, 3191, 3209 |
| DraIII | CACNNNGTG | 3 cut(s) | 1601, 1675, 2800 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2048 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2048 |
| EaeI | YGGCCR | 1 cut(s) | 787 |
| EagI | CGGCCG | 1 cut(s) | 787 |
| Eam1104I | CTCTTC | 4 cut(s) | 44, 1053, 1731, 2203 |
| EarI | CTCTTC | 4 cut(s) | 44, 1053, 1731, 2203 |
| EciI | GGCGGA | 2 cut(s) | 206, 299 |
| Ecl136II | GAGCTC | 2 cut(s) | 37, 196 |
| EclXI | CGGCCG | 1 cut(s) | 787 |
| Eco130I | CCWWGG | 6 cut(s) | 447, 600, 1527, 2053, 2734, 2807 |
| Eco24I | GRGCYC | 2 cut(s) | 39, 198 |
| Eco47I | GGWCC | 7 cut(s) | 232, 444, 1207, 2107, 2515, 2641, 2683 |
| Eco52I | CGGCCG | 1 cut(s) | 787 |
| Eco53kI | GAGCTC | 2 cut(s) | 37, 196 |
| Eco57I | CTGAAG | 3 cut(s) | 875, 1019, 1683 |
| Eco81I | CCTNAGG | 1 cut(s) | 440 |
| Eco88I | CYCGRG | 2 cut(s) | 317, 1128 |
| EcoICRI | GAGCTC | 2 cut(s) | 37, 196 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2025 |
| EcoO109I | RGGNCCY | 5 cut(s) | 1207, 2107, 2515, 2641, 2683 |
| EcoRII | CCWGG | 1 cut(s) | 540 |
| EcoT14I | CCWWGG | 6 cut(s) | 447, 600, 1527, 2053, 2734, 2807 |
| EcoT38I | GRGCYC | 2 cut(s) | 39, 198 |
| ErhI | CCWWGG | 6 cut(s) | 447, 600, 1527, 2053, 2734, 2807 |
| Esp3I | CGTCTC | 1 cut(s) | 146 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 757, 789, 2978, 3010 |
| FaqI | GGGAC | 2 cut(s) | 2893, 2950 |
| FauI | CCCGC | 2 cut(s) | 1848, 3126 |
| FbaI | TGATCA | 2 cut(s) | 162, 1117 |
| FblI | GTMKAC | 1 cut(s) | 1632 |
| FokI | GGATG | 6 cut(s) | 741, 938, 1578, 2166, 2798, 2925 |
| FriOI | GRGCYC | 2 cut(s) | 39, 198 |
| FspBI | CTAG | 3 cut(s) | 467, 1800, 2730 |
| GlaI | GCGC | 7 cut(s) | 30, 292, 387, 429, 663, 823, 1525 |
| GsuI | CTGGAG | 2 cut(s) | 494, 1504 |
| HaeII | RGCGCY | 3 cut(s) | 32, 665, 1527 |
| HaeIII | GGCC | 5 cut(s) | 149, 779, 789, 2377, 3086 |
| HapII | CCGG | 4 cut(s) | 32, 222, 354, 2874 |
| HgaI | GACGC | 6 cut(s) | 95, 369, 381, 688, 1031, 1222 |
| HhaI | GCGC | 7 cut(s) | 31, 293, 388, 430, 664, 824, 1526 |
| Hin1I | GRCGYC | 3 cut(s) | 87, 380, 1233 |
| Hin6I | GCGC | 7 cut(s) | 29, 291, 386, 428, 662, 822, 1524 |
| HinP1I | GCGC | 7 cut(s) | 29, 291, 386, 428, 662, 822, 1524 |
| HincII | GTYRAC | 4 cut(s) | 691, 1158, 1476, 1516 |
| HindII | GTYRAC | 4 cut(s) | 691, 1158, 1476, 1516 |
| HindIII | AAGCTT | 2 cut(s) | 19, 581 |
| HpaI | GTTAAC | 3 cut(s) | 691, 1158, 1516 |
| HpaII | CCGG | 4 cut(s) | 32, 222, 354, 2874 |
| Hpy166II | GTNNAC | 8 cut(s) | 337, 691, 1158, 1476, 1516, 1633, 1705, 2803 |
| Hpy8I | GTNNAC | 8 cut(s) | 337, 691, 1158, 1476, 1516, 1633, 1705, 2803 |
| Hpy99I | CGWCG | 5 cut(s) | 107, 250, 385, 397, 2337 |
| HpyAV | CCTTC | 7 cut(s) | 679, 733, 852, 1028, 1707, 2402, 3042 |
| HpyCH4IV | ACGT | 3 cut(s) | 615, 1536, 2332 |
| HpySE526I | ACGT | 3 cut(s) | 615, 1536, 2332 |
| Hsp92I | GRCGYC | 3 cut(s) | 87, 380, 1233 |
| HspAI | GCGC | 7 cut(s) | 29, 291, 386, 428, 662, 822, 1524 |
| Kpn2I | TCCGGA | 1 cut(s) | 2873 |
| KroI | GCCGGC | 1 cut(s) | 221 |
| KroNI | GCCGGC | 1 cut(s) | 223 |
| Ksp22I | TGATCA | 2 cut(s) | 162, 1117 |
| KspAI | GTTAAC | 3 cut(s) | 691, 1158, 1516 |
| KspI | CCGCGG | 1 cut(s) | 681 |
| LguI | GCTCTTC | 2 cut(s) | 44, 1053 |
| Lsp1109I | GCAGC | 8 cut(s) | 254, 354, 651, 873, 946, 978, 1162, 3079 |
| LweI | GCATC | 6 cut(s) | 719, 1018, 1747, 2304, 2947, 2959 |
| MabI | ACCWGGT | 1 cut(s) | 540 |
| MaeI | CTAG | 3 cut(s) | 467, 1800, 2730 |
| MaeII | ACGT | 3 cut(s) | 615, 1536, 2332 |
| MbiI | CCGCTC | 1 cut(s) | 918 |
| MfeI | CAATTG | 3 cut(s) | 2523, 2530, 2565 |
| MflI | RGATCY | 5 cut(s) | 502, 1056, 1222, 1369, 2833 |
| MhlI | GDGCHC | 6 cut(s) | 39, 198, 575, 1129, 1861, 2805 |
| MluI | ACGCGT | 1 cut(s) | 390 |
| MmeI | TCCRAC | 3 cut(s) | 1197, 1663, 2383 |
| MreI | CGCCGGCG | 1 cut(s) | 221 |
| MroI | TCCGGA | 1 cut(s) | 2873 |
| MroNI | GCCGGC | 1 cut(s) | 221 |
| MroXI | GAANNNNTTC | 2 cut(s) | 131, 2288 |
| MslI | CAYNNNNRTG | 4 cut(s) | 551, 555, 1871, 2348 |
| MspA1I | CMGCKG | 6 cut(s) | 367, 680, 805, 895, 991, 2609 |
| MspCI | CTTAAG | 1 cut(s) | 416 |
| MspI | CCGG | 4 cut(s) | 32, 222, 354, 2874 |
| MspR9I | CCNGG | 2 cut(s) | 355, 542 |
| MunI | CAATTG | 3 cut(s) | 2523, 2530, 2565 |
| Mva1269I | GAATGC | 1 cut(s) | 761 |
| MvaI | CCWGG | 1 cut(s) | 542 |
| NaeI | GCCGGC | 1 cut(s) | 223 |
| NciI | CCSGG | 1 cut(s) | 355 |
| NcoI | CCATGG | 2 cut(s) | 2053, 2734 |
| NgoMIV | GCCGGC | 1 cut(s) | 221 |
| NheI | GCTAGC | 1 cut(s) | 466 |
| NlaIV | GGNNCC | 6 cut(s) | 51, 327, 504, 1058, 2109, 2813 |
| NmeAIII | GCCGAG | 5 cut(s) | 26, 175, 260, 285, 762 |
| NmuCI | GTSAC | 7 cut(s) | 344, 742, 937, 1816, 1944, 2273, 3179 |
| NruI | TCGCGA | 1 cut(s) | 107 |
| NspI | RCATGY | 1 cut(s) | 3063 |
| NspV | TTCGAA | 1 cut(s) | 2543 |
| OliI | CACNNNNGTG | 1 cut(s) | 555 |
| PaeI | GCATGC | 1 cut(s) | 3063 |
| PaeR7I | CTCGAG | 1 cut(s) | 1128 |
| PciSI | GCTCTTC | 2 cut(s) | 44, 1053 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 141, 345, 389, 630 |
| PctI | GAATGC | 1 cut(s) | 761 |
| PdiI | GCCGGC | 1 cut(s) | 223 |
| PdmI | GAANNNNTTC | 2 cut(s) | 131, 2288 |
| Pfl23II | CGTACG | 1 cut(s) | 621 |
| PflFI | GACNNNGTC | 3 cut(s) | 140, 542, 698 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2979 |
| PfoI | TCCNGGA | 1 cut(s) | 353 |
| PpuMI | RGGWCCY | 5 cut(s) | 1207, 2107, 2515, 2641, 2683 |
| PshBI | ATTAAT | 1 cut(s) | 2928 |
| Psp124BI | GAGCTC | 2 cut(s) | 39, 198 |
| Psp5II | RGGWCCY | 5 cut(s) | 1207, 2107, 2515, 2641, 2683 |
| Psp6I | CCWGG | 1 cut(s) | 540 |
| PspGI | CCWGG | 1 cut(s) | 540 |
| PspLI | CGTACG | 1 cut(s) | 621 |
| PspN4I | GGNNCC | 6 cut(s) | 51, 327, 504, 1058, 2109, 2813 |
| PspPPI | RGGWCCY | 5 cut(s) | 1207, 2107, 2515, 2641, 2683 |
| PspXI | VCTCGAGB | 1 cut(s) | 1128 |
| PstI | CTGCAG | 1 cut(s) | 2782 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3228 |
| PsuI | RGATCY | 5 cut(s) | 502, 1056, 1222, 1369, 2833 |
| PsyI | GACNNNGTC | 3 cut(s) | 140, 542, 698 |
| PvuII | CAGCTG | 3 cut(s) | 895, 991, 2609 |
| RruI | TCGCGA | 1 cut(s) | 107 |
| RsaI | GTAC | 6 cut(s) | 433, 623, 1462, 1547, 3192, 3210 |
| RsaNI | GTAC | 6 cut(s) | 432, 622, 1461, 1546, 3191, 3209 |
| RseI | CAYNNNNRTG | 4 cut(s) | 551, 555, 1871, 2348 |
| SacI | GAGCTC | 2 cut(s) | 39, 198 |
| SacII | CCGCGG | 1 cut(s) | 681 |
| SapI | GCTCTTC | 2 cut(s) | 44, 1053 |
| ScaI | AGTACT | 2 cut(s) | 1547, 3210 |
| ScrFI | CCNGG | 2 cut(s) | 355, 542 |
| SduI | GDGCHC | 6 cut(s) | 39, 198, 575, 1129, 1861, 2805 |
| SexAI | ACCWGGT | 1 cut(s) | 540 |
| SfaNI | GCATC | 6 cut(s) | 719, 1018, 1747, 2304, 2947, 2959 |
| SfcI | CTRYAG | 3 cut(s) | 1365, 1761, 2778 |
| Sfr274I | CTCGAG | 1 cut(s) | 1128 |
| Sfr303I | CCGCGG | 1 cut(s) | 681 |
| SfuI | TTCGAA | 1 cut(s) | 2543 |
| SgrAI | CRCCGGYG | 1 cut(s) | 221 |
| SgrBI | CCGCGG | 1 cut(s) | 681 |
| SinI | GGWCC | 7 cut(s) | 232, 444, 1207, 2107, 2515, 2641, 2683 |
| SlaI | CTCGAG | 1 cut(s) | 1128 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 551, 555, 1871, 2348 |
| SmlI | CTYRAG | 8 cut(s) | 416, 1128, 1202, 1383, 2085, 2552, 2636, 2719 |
| SmoI | CTYRAG | 8 cut(s) | 416, 1128, 1202, 1383, 2085, 2552, 2636, 2719 |
| SphI | GCATGC | 1 cut(s) | 3063 |
| SspI | AATATT | 1 cut(s) | 2002 |
| SspMI | CTAG | 3 cut(s) | 467, 1800, 2730 |
| SstI | GAGCTC | 2 cut(s) | 39, 198 |
| StyD4I | CCNGG | 2 cut(s) | 353, 540 |
| StyI | CCWWGG | 6 cut(s) | 447, 600, 1527, 2053, 2734, 2807 |
| TaiI | ACGT | 3 cut(s) | 618, 1539, 2335 |
| TaqI | TCGA | 9 cut(s) | 135, 144, 276, 299, 1129, 1561, 1665, 2335, 2543 |
| TaqII | GACCGA | 2 cut(s) | 130, 249 |
| TatI | WGTACW | 3 cut(s) | 1545, 3190, 3208 |
| TseFI | GTSAC | 7 cut(s) | 344, 742, 937, 1816, 1944, 2273, 3179 |
| TseI | GCWGC | 8 cut(s) | 267, 367, 664, 886, 959, 991, 1175, 3067 |
| Tsp45I | GTSAC | 7 cut(s) | 344, 742, 937, 1816, 1944, 2273, 3179 |
| TspDTI | ATGAA | 8 cut(s) | 990, 1040, 1157, 1268, 1497, 2238, 2498, 2802 |
| TspGWI | ACGGA | 5 cut(s) | 91, 515, 851, 944, 1262 |
| Tth111I | GACNNNGTC | 3 cut(s) | 140, 542, 698 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2979 |
| Vha464I | CTTAAG | 1 cut(s) | 416 |
| VneI | GTGCAC | 1 cut(s) | 2801 |
| VpaK11BI | GGWCC | 7 cut(s) | 232, 444, 1207, 2107, 2515, 2641, 2683 |
| VspI | ATTAAT | 1 cut(s) | 2928 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2025 |
| XapI | RAATTY | 4 cut(s) | 1006, 1969, 2225, 3005 |
| XbaI | TCTAGA | 1 cut(s) | 1799 |
| XceI | RCATGY | 1 cut(s) | 3063 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 538 |
| XhoI | CTCGAG | 1 cut(s) | 1128 |
| XmiI | GTMKAC | 1 cut(s) | 1632 |
| XmnI | GAANNNNTTC | 2 cut(s) | 131, 2288 |
| XspI | CTAG | 3 cut(s) | 467, 1800, 2730 |
| ZrmI | AGTACT | 2 cut(s) | 1547, 3210 |