Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013078.1

Orthogroup ID

OG0000679

Physical Location & Seq

Genomic Coordinates Reverse (-)

55054 .. 55502

Gene Structure 449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013078.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

atgatggaagtgcgtcggagtcccaacttcaatttggatttgagcactgtgaaacttttaagtgaaaaaactaaaaagattgctgaggtggcttattcatatgtcgttaaagggcgcgtagcttctctgactgctctactcatcgtcgccgccaagaaggttaacaattccgtcttggaattgcgtgattccgactcaggtcgcaaggagaaggtaaccatctacgaatgccttataagggaggctttggccctgggctgccgtacaagggagagcgaaaattcagagagaaggaagctgttggtttgcgagatagagctgctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_4 OST-HTH RRM_1

Protein Analysis

108

Amino Acids

12.22

Weight (kDa)

9.27

Isoelectric Point (pI)

43.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000679)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28880
fragaria_vesca	FvH4_1g02370 FvH4_1g02370 FvH4_6g48800 FvH4_6g48800 FvH4_6g48800 FvH4_6g49030 FvH4_6g49030 FvH4_6g49030
malus_domestica	MD09G1050300.v1.1
prunus_persica	Prupe.3G268600_v2.0.a1 Prupe.3G268600_v2.0.a1 Prupe.3G268600_v2.0.a1 Prupe.3G268600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0168671 RchiOBHm_Chr2g0169051 RchiOBHm_Chr2g0170061 RchiOBHm_Chr2g0170071 RchiOBHm_Chr6g0246231 RchiOBHm_Chr6g0246241
rosa_laevigata	RLG00000015269 RLG00000021799 RLG00000021800 RLG00000021827 RLG00000021828 RLG00000035229
rosa_multiflora	Rmu_sc0002416.1_g000001 Rmu_sc0009451.1_g000006 Rmu_sc0013078.1_g000013 Rmu_sc0032865.1_g000001 Rmu_ssc0000393.1_g000027
rosa_roxburghii	Rroxscaffold_2G00081630 Rroxscaffold_2G00082770 Rroxscaffold_7G00214740
rosa_rugosa	Rorug02G0534500 Rorug02G0536600 Rorug02G0545500 Rorug02G0545500 Rorug05G0519700 Rorug05G0519800
rosa_samantha	Rh2AG605400 Rh2AG608100 Rh2AG608200 Rh2AG617600 Rh2BG618300 Rh2BG620800 Rh2BG621000 Rh2BG621100 Rh2BG629100 Rh2CG586500 Rh2CG589800 Rh2CG589900 Rh2CG598400 Rh2DG628900 Rh2DG631400 Rh2DG631600 Rh2DG631700 Rh2DG640900 Rh5AG381700 Rh5BG393400 Rh5BG393500 Rh5CG417500 Rh6AG033900 Rh6BG029100 Rh6CG029300 Rh6CG029400 Rh6CG029500 Rh6CG220500 Rh6DG028400 Rh6DG028500
rosa_wichuraiana	Rw0G009340 Rw2G050180 Rw2G050430 Rw2G051130 Rw6G002900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	236
AccII	CGCG	1 cut(s)	117
AciI	CCGC	1 cut(s)	150
AcsI	RAATTY	1 cut(s)	280
AfaI	GTAC	1 cut(s)	265
AfiI	CCNNNNNNNGG	2 cut(s)	238, 268
AgsI	TTSAA	1 cut(s)	31
AjnI	CCWGG	1 cut(s)	252
AluBI	AGCT	3 cut(s)	122, 298, 319
AluI	AGCT	3 cut(s)	122, 298, 319
Alw21I	GWGCWC	1 cut(s)	47
AoxI	GGCC	1 cut(s)	249
ApeKI	GCWGC	2 cut(s)	258, 319
ApoI	RAATTY	1 cut(s)	280
AspLEI	GCGC	1 cut(s)	117
AspS9I	GGNCC	1 cut(s)	250
Bbv12I	GWGCWC	1 cut(s)	47
BbvCI	CCTCAGC	1 cut(s)	84
BbvI	GCAGC	2 cut(s)	245, 306
BccI	CCATC	1 cut(s)	227
BceAI	ACGGC	1 cut(s)	246
BciT130I	CCWGG	1 cut(s)	254
BisI	GCNGC	3 cut(s)	150, 259, 320
BlsI	GCNGC	3 cut(s)	151, 260, 321
Bme1390I	CCNGG	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	250
BmrFI	CCNGG	1 cut(s)	254
BoxI	GACNNNNGTC	1 cut(s)	198
Bpu10I	CCTNAGC	1 cut(s)	84
BsaJI	CCNNGG	2 cut(s)	252, 253
Bsc4I	CCNNNNNNNGG	2 cut(s)	238, 268
BseBI	CCWGG	1 cut(s)	254
BseDI	CCNNGG	2 cut(s)	252, 253
BseLI	CCNNNNNNNGG	2 cut(s)	238, 268
BseMII	CTCAG	2 cut(s)	75, 210
BseXI	GCAGC	2 cut(s)	245, 306
Bsh1236I	CGCG	1 cut(s)	117
BshFI	GGCC	1 cut(s)	251
BsiHKAI	GWGCWC	1 cut(s)	47
BslFI	GGGAC	1 cut(s)	6
BslI	CCNNNNNNNGG	2 cut(s)	238, 268
BsmFI	GGGAC	1 cut(s)	6
BsmI	GAATGC	1 cut(s)	233
BsnI	GGCC	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	47
BspACI	CCGC	1 cut(s)	150
BspANI	GGCC	1 cut(s)	251
BspCNI	CTCAG	2 cut(s)	76, 209
BspFNI	CGCG	1 cut(s)	117
BssECI	CCNNGG	2 cut(s)	252, 253
Bst2UI	CCWGG	1 cut(s)	254
Bst4CI	ACNGT	1 cut(s)	49
BstDEI	CTNAG	2 cut(s)	84, 196
BstEII	GGTNACC	1 cut(s)	214
BstFNI	CGCG	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstNI	CCWGG	1 cut(s)	254
BstPAI	GACNNNNGTC	1 cut(s)	198
BstPI	GGTNACC	1 cut(s)	214
BstSCI	CCNGG	1 cut(s)	252
BstUI	CGCG	1 cut(s)	117
BstV1I	GCAGC	2 cut(s)	245, 306
BsuRI	GGCC	1 cut(s)	251
BtsIMutI	CAGTG	1 cut(s)	45
CfoI	GCGC	1 cut(s)	117
Cfr13I	GGNCC	1 cut(s)	250
CseI	GACGC	1 cut(s)	2
Csp6I	GTAC	1 cut(s)	264
CviJI	RGCY	7 cut(s)	92, 122, 245, 251, 258, 298, 319
CviKI_1	RGCY	7 cut(s)	92, 122, 245, 251, 258, 298, 319
CviQI	GTAC	1 cut(s)	264
DdeI	CTNAG	2 cut(s)	84, 196
Eco91I	GGTNACC	1 cut(s)	214
EcoO65I	GGTNACC	1 cut(s)	214
EcoRII	CCWGG	1 cut(s)	252
FaiI	YATR	3 cut(s)	100, 102, 236
FalI	AAGNNNNNCTT	2 cut(s)	229, 261
FaqI	GGGAC	1 cut(s)	6
FauNDI	CATATG	1 cut(s)	100
Fnu4HI	GCNGC	3 cut(s)	150, 259, 320
Fsp4HI	GCNGC	3 cut(s)	150, 259, 320
GlaI	GCGC	1 cut(s)	116
GluI	GCNGC	3 cut(s)	150, 259, 320
HaeIII	GGCC	1 cut(s)	251
HgaI	GACGC	1 cut(s)	2
HhaI	GCGC	1 cut(s)	117
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	3 cut(s)	19, 188, 194
HpaI	GTTAAC	1 cut(s)	163
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	4 cut(s)	18, 129, 193, 286
Hpy8I	GTNNAC	1 cut(s)	163
Hpy99I	CGWCG	2 cut(s)	18, 149
HpyAV	CCTTC	3 cut(s)	151, 205, 285
HpyCH4III	ACNGT	1 cut(s)	49
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	2 cut(s)	84, 196
HspAI	GCGC	1 cut(s)	115
KspAI	GTTAAC	1 cut(s)	163
LpnPI	CCDG	3 cut(s)	183, 239, 266
Lsp1109I	GCAGC	2 cut(s)	245, 306
MaeIII	GTNAC	1 cut(s)	214
MhlI	GDGCHC	1 cut(s)	47
MluCI	AATT	4 cut(s)	31, 166, 179, 280
MlyI	GAGTC	2 cut(s)	28, 188
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	2 cut(s)	79, 235
MseI	TTAA	4 cut(s)	59, 108, 162, 325
MspR9I	CCNGG	1 cut(s)	254
Mva1269I	GAATGC	1 cut(s)	233
MvaI	CCWGG	1 cut(s)	254
MvnI	CGCG	1 cut(s)	117
MwoI	GCNNNNNNNGC	1 cut(s)	89
NdeI	CATATG	1 cut(s)	100
PasI	CCCWGGG	1 cut(s)	253
PctI	GAATGC	1 cut(s)	233
PfeI	GAWTC	1 cut(s)	188
PkrI	GCNGC	3 cut(s)	151, 260, 321
PleI	GAGTC	2 cut(s)	27, 188
PpsI	GAGTC	2 cut(s)	27, 188
PshAI	GACNNNNGTC	1 cut(s)	198
PsiI	TTATAA	1 cut(s)	236
Psp6I	CCWGG	1 cut(s)	252
PspEI	GGTNACC	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	252
PspPI	GGNCC	1 cut(s)	250
RsaI	GTAC	1 cut(s)	265
RsaNI	GTAC	1 cut(s)	264
SaqAI	TTAA	4 cut(s)	59, 108, 162, 325
SatI	GCNGC	3 cut(s)	150, 259, 320
Sau96I	GGNCC	1 cut(s)	250
SchI	GAGTC	2 cut(s)	28, 188
ScrFI	CCNGG	1 cut(s)	254
SduI	GDGCHC	1 cut(s)	47
SetI	ASST	7 cut(s)	90, 124, 162, 202, 216, 300, 321
Sse9I	AATT	4 cut(s)	31, 166, 179, 280
SsiI	CCGC	1 cut(s)	150
StyD4I	CCNGG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	49
TasI	AATT	4 cut(s)	31, 166, 179, 280
TauI	GCSGC	1 cut(s)	152
TfiI	GAWTC	1 cut(s)	188
Tru1I	TTAA	4 cut(s)	59, 108, 162, 325
Tru9I	TTAA	4 cut(s)	59, 108, 162, 325
TscAI	CASTG	1 cut(s)	52
TseI	GCWGC	2 cut(s)	258, 319
TspDTI	ATGAA	1 cut(s)	87
TspGWI	ACGGA	1 cut(s)	160
TspRI	CASTG	1 cut(s)	52
XapI	RAATTY	1 cut(s)	280
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.