Rh5CG417500

OST-HTH/LOTUS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000679
Physical Location & Seq
Forward (+)
56989765 .. 56991370
1606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG417500.1

Sequence Viewer

Length: 774 bp
ATGGATCATTCGTACACTGTTAAAGGGCGCGTAGCTTCTCTGCCTGCTCTACTCATCGCCGCCGCCGAGAAGGTTAACGATTCCGTCTTGGAGTTGAGTGATTCCGATTCGGGGGGCAAGGAGAAGGACACTCTCTACGAATGTCTTATAAGGGAGGCTTTGGCCCCGGGAGGCCTTACAACGACGCCGTTGAGGGAGGCCAAACTCGCCTCCACGGCGACGGAGAGCGAAAACTCGGAGAGAAGTAAGCTCGTGCTTCGAGAGATAGAGCCGCTTCAGCTCTTCGGAGCTGTTCCTCAGAGCGGTGGTGGGGACAAGAAGGTGGCGAGGAAGCTCGTGCTTCGAGAGATAGAGCTGCTTCAGCTCCGAAGAGCTGTTGCTCAGAGCGGTGGTGGTGGTGGGGACAAGAAGGTGACTTCGCCACTCATCCGTGCAGCTCAGGGAGGAGACAAAGCTGTTATCCGCCAGCTGCTTCTGAAGACAAATATAGATGTCAACGATGCTGATGTAGATGGAAATTCTGCTCTTCATTGGATACTTGGGTTGTCATGTCCACAACAGTTAAGTATTGTATTGCTTCTTTTAGAGCATGCTGCCGGCAATGGTAATTCAAAGGCCCTTAAGATCCTTCTGTTGGACGACCCGTTAGCTGTCCAGTATATGTCAGAACAGAAACAAACCCCCCTCTTTTTCGCTGTGAAGAATGAGAGTGAAGACTGTGCTGATCTTCTTATAACCTCGGGAGCAAATAGTGAAGTCCTTAATGTGCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 OST-HTH RRM_1

Protein Analysis

257

Amino Acids

27.42

Weight (kDa)

5.38

Isoelectric Point (pI)

50.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 149, 734
AccBSI CCGCTC 2 cut(s) 303, 387
AccII CGCG 1 cut(s) 30
AciI CCGC 7 cut(s) 60, 63, 272, 303, 387, 463, 769
AclWI GGATC 2 cut(s) 12, 619
AcsI RAATTY 1 cut(s) 517
AcuI CTGAAG 3 cut(s) 260, 344, 497
AcyI GRCGYC 1 cut(s) 185
AfaI GTAC 1 cut(s) 14
AfiI CCNNNNNNNGG 3 cut(s) 111, 302, 634
AflII CTTAAG 1 cut(s) 620
AgsI TTSAA 1 cut(s) 612
Alw26I GTCTC 1 cut(s) 441
AlwI GGATC 2 cut(s) 12, 619
Ama87I CYCGRG 2 cut(s) 166, 739
AoxI GGCC 4 cut(s) 162, 172, 198, 615
ApeKI GCWGC 4 cut(s) 355, 434, 469, 593
ApoI RAATTY 1 cut(s) 517
AspLEI GCGC 1 cut(s) 30
AspS9I GGNCC 2 cut(s) 163, 616
AsuC2I CCSGG 2 cut(s) 167, 168
AsuHPI GGTGA 1 cut(s) 424
AvaI CYCGRG 2 cut(s) 166, 739
BaeI ACNNNNGTAYC 2 cut(s) 527, 560
BauI CACGAG 2 cut(s) 251, 335
BbsI GAAGAC 2 cut(s) 485, 720
BbvI GCAGC 4 cut(s) 342, 446, 456, 580
BccI CCATC 1 cut(s) 506
BceAI ACGGC 2 cut(s) 172, 231
BciVI GTATCC 1 cut(s) 528
BcnI CCSGG 2 cut(s) 167, 168
BcoDI GTCTC 1 cut(s) 441
BfrI CTTAAG 1 cut(s) 620
BfuI GTATCC 1 cut(s) 528
BglI GCCNNNNNGGC 1 cut(s) 215
BisI GCNGC 7 cut(s) 60, 63, 272, 356, 435, 470, 594
BlsI GCNGC 7 cut(s) 61, 64, 273, 357, 436, 471, 595
Bme1390I CCNGG 2 cut(s) 167, 168
BmeT110I CYCGRG 2 cut(s) 166, 739
BmgT120I GGNCC 2 cut(s) 163, 616
BmiI GGNNCC 1 cut(s) 165
BmrFI CCNGG 2 cut(s) 167, 168
BmsI GCATC 1 cut(s) 490
BpiI GAAGAC 2 cut(s) 485, 720
Bpu10I CCTNAGC 1 cut(s) 438
BpuMI CCSGG 2 cut(s) 167, 168
BsaHI GRCGYC 1 cut(s) 185
BsaJI CCNNGG 4 cut(s) 165, 166, 213, 738
Bsc4I CCNNNNNNNGG 3 cut(s) 111, 302, 634
Bse118I RCCGGY 1 cut(s) 596
Bse1I ACTGG 1 cut(s) 655
Bse3DI GCAATG 1 cut(s) 607
BseDI CCNNGG 4 cut(s) 165, 166, 213, 738
BseGI GGATG 1 cut(s) 426
BseLI CCNNNNNNNGG 3 cut(s) 111, 302, 634
BseMI GCAATG 1 cut(s) 607
BseMII CTCAG 3 cut(s) 311, 395, 452
BseNI ACTGG 1 cut(s) 655
BseRI GAGGAG 1 cut(s) 459
BseXI GCAGC 4 cut(s) 342, 446, 456, 580
BsgI GTGCAG 1 cut(s) 453
Bsh1236I CGCG 1 cut(s) 30
BshFI GGCC 4 cut(s) 164, 174, 200, 617
BsiHKCI CYCGRG 2 cut(s) 166, 739
BsiSI CCGG 2 cut(s) 167, 597
BslFI GGGAC 2 cut(s) 326, 416
BslI CCNNNNNNNGG 3 cut(s) 111, 302, 634
BsmAI GTCTC 1 cut(s) 441
BsmFI GGGAC 2 cut(s) 326, 416
BsnI GGCC 4 cut(s) 164, 174, 200, 617
BsoBI CYCGRG 2 cut(s) 166, 739
Bsp143I GATC 3 cut(s) 4, 624, 724
BspACI CCGC 7 cut(s) 60, 63, 272, 303, 387, 463, 769
BspANI GGCC 4 cut(s) 164, 174, 200, 617
BspCNI CTCAG 3 cut(s) 310, 394, 451
BspFNI CGCG 1 cut(s) 30
BspLI GGNNCC 1 cut(s) 165
BspPI GGATC 2 cut(s) 12, 619
BspQI GCTCTTC 3 cut(s) 287, 364, 531
BspTI CTTAAG 1 cut(s) 620
BsrBI CCGCTC 2 cut(s) 303, 387
BsrDI GCAATG 1 cut(s) 607
BsrFI RCCGGY 1 cut(s) 596
BsrI ACTGG 1 cut(s) 655
BssAI RCCGGY 1 cut(s) 596
BssECI CCNNGG 4 cut(s) 165, 166, 213, 738
BssMI GATC 3 cut(s) 4, 624, 724
BssNI GRCGYC 1 cut(s) 185
BssSI CACGAG 2 cut(s) 251, 335
Bst2BI CACGAG 2 cut(s) 251, 335
Bst4CI ACNGT 3 cut(s) 19, 561, 719
Bst6I CTCTTC 3 cut(s) 287, 364, 531
BstACI GRCGYC 1 cut(s) 185
BstAFI CTTAAG 1 cut(s) 620
BstC8I GCNNGC 4 cut(s) 45, 467, 591, 598
BstDEI CTNAG 3 cut(s) 297, 381, 438
BstDSI CCRYGG 1 cut(s) 213
BstF5I GGATG 1 cut(s) 426
BstFNI CGCG 1 cut(s) 30
BstHHI GCGC 1 cut(s) 30
BstKTI GATC 3 cut(s) 7, 627, 727
BstMAI GTCTC 1 cut(s) 441
BstMBI GATC 3 cut(s) 4, 624, 724
BstMWI GCNNNNNNNGC 4 cut(s) 206, 215, 277, 361
BstNSI RCATGY 1 cut(s) 593
BstSCI CCNGG 2 cut(s) 165, 166
BstUI CGCG 1 cut(s) 30
BstV1I GCAGC 4 cut(s) 342, 446, 456, 580
BstV2I GAAGAC 2 cut(s) 485, 720
BstX2I RGATCY 1 cut(s) 624
BstYI RGATCY 1 cut(s) 624
BsuI GTATCC 1 cut(s) 528
BsuRI GGCC 4 cut(s) 164, 174, 200, 617
BtgI CCRYGG 1 cut(s) 213
BtgZI GCGATG 1 cut(s) 40
BtsCI GGATG 1 cut(s) 426
BtsIMutI CAGTG 1 cut(s) 15
Cac8I GCNNGC 4 cut(s) 45, 467, 591, 598
CfoI GCGC 1 cut(s) 30
Cfr10I RCCGGY 1 cut(s) 596
Cfr13I GGNCC 2 cut(s) 163, 616
Cfr9I CCCGGG 1 cut(s) 166
CseI GACGC 1 cut(s) 193
Csp6I GTAC 1 cut(s) 13
CviAII CATG 2 cut(s) 549, 590
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 3 cut(s) 297, 381, 438
DpnI GATC 3 cut(s) 6, 626, 726
DpnII GATC 3 cut(s) 4, 624, 724
Eam1104I CTCTTC 3 cut(s) 287, 364, 531
EarI CTCTTC 3 cut(s) 287, 364, 531
EciI GGCGGA 1 cut(s) 452
Eco147I AGGCCT 1 cut(s) 174
Eco57I CTGAAG 3 cut(s) 260, 344, 497
Eco88I CYCGRG 2 cut(s) 166, 739
EcoO109I RGGNCCY 1 cut(s) 616
FaeI CATG 2 cut(s) 552, 593
FaiI YATR 7 cut(s) 149, 488, 550, 591, 660, 662, 734
FalI AAGNNNNNCTT 2 cut(s) 142, 174
FaqI GGGAC 2 cut(s) 326, 416
FatI CATG 2 cut(s) 548, 589
Fnu4HI GCNGC 7 cut(s) 60, 63, 272, 356, 435, 470, 594
FokI GGATG 1 cut(s) 413
Fsp4HI GCNGC 7 cut(s) 60, 63, 272, 356, 435, 470, 594
GlaI GCGC 1 cut(s) 29
GluI GCNGC 7 cut(s) 60, 63, 272, 356, 435, 470, 594
HaeIII GGCC 4 cut(s) 164, 174, 200, 617
HapII CCGG 2 cut(s) 167, 597
HgaI GACGC 1 cut(s) 193
HhaI GCGC 1 cut(s) 30
Hin1I GRCGYC 1 cut(s) 185
Hin1II CATG 2 cut(s) 552, 593
Hin6I GCGC 1 cut(s) 28
HinP1I GCGC 1 cut(s) 28
HincII GTYRAC 2 cut(s) 76, 496
HindII GTYRAC 2 cut(s) 76, 496
HinfI GANTC 3 cut(s) 80, 101, 107
HpaI GTTAAC 1 cut(s) 76
HpaII CCGG 2 cut(s) 167, 597
HphI GGTGA 1 cut(s) 424
Hpy166II GTNNAC 4 cut(s) 15, 76, 496, 554
Hpy188I TCNGA 8 cut(s) 106, 238, 287, 300, 368, 384, 477, 667
Hpy188III TCNNGA 3 cut(s) 260, 344, 741
Hpy8I GTNNAC 4 cut(s) 15, 76, 496, 554
Hpy99I CGWCG 2 cut(s) 187, 223
HpyAV CCTTC 5 cut(s) 64, 118, 313, 403, 638
HpyCH4III ACNGT 3 cut(s) 19, 561, 719
HpyCH4V TGCA 1 cut(s) 434
HpyF10VI GCNNNNNNNGC 4 cut(s) 206, 215, 277, 361
HpyF3I CTNAG 3 cut(s) 297, 381, 438
Hsp92I GRCGYC 1 cut(s) 185
Hsp92II CATG 2 cut(s) 552, 593
HspAI GCGC 1 cut(s) 28
KroI GCCGGC 1 cut(s) 596
KroNI GCCGGC 1 cut(s) 598
KspAI GTTAAC 1 cut(s) 76
Kzo9I GATC 3 cut(s) 4, 624, 724
LguI GCTCTTC 3 cut(s) 287, 364, 531
LmnI GCTCC 3 cut(s) 287, 369, 743
LpnPI CCDG 6 cut(s) 57, 180, 425, 479, 610, 668
Lsp1109I GCAGC 4 cut(s) 342, 446, 456, 580
LweI GCATC 1 cut(s) 490
MaeIII GTNAC 1 cut(s) 412
MalI GATC 3 cut(s) 6, 626, 726
MbiI CCGCTC 2 cut(s) 303, 387
MboI GATC 3 cut(s) 4, 624, 724
MboII GAAGA 7 cut(s) 274, 381, 490, 518, 712, 719, 725
MflI RGATCY 1 cut(s) 624
MluCI AATT 2 cut(s) 517, 607
MmeI TCCRAC 1 cut(s) 615
MroNI GCCGGC 1 cut(s) 596
MseI TTAA 5 cut(s) 21, 75, 563, 621, 762
MspA1I CMGCKG 1 cut(s) 469
MspCI CTTAAG 1 cut(s) 620
MspI CCGG 2 cut(s) 167, 597
MspR9I CCNGG 2 cut(s) 167, 168
MvnI CGCG 1 cut(s) 30
MwoI GCNNNNNNNGC 4 cut(s) 206, 215, 277, 361
NaeI GCCGGC 1 cut(s) 598
NciI CCSGG 2 cut(s) 167, 168
NdeII GATC 3 cut(s) 4, 624, 724
NgoMIV GCCGGC 1 cut(s) 596
NlaIII CATG 2 cut(s) 552, 593
NlaIV GGNNCC 1 cut(s) 165
NmeAIII GCCGAG 1 cut(s) 91
NmuCI GTSAC 1 cut(s) 412
NspI RCATGY 1 cut(s) 593
PaeI GCATGC 1 cut(s) 593
PceI AGGCCT 1 cut(s) 174
PciSI GCTCTTC 3 cut(s) 287, 364, 531
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PdiI GCCGGC 1 cut(s) 598
PfeI GAWTC 3 cut(s) 80, 101, 107
PkrI GCNGC 7 cut(s) 61, 64, 273, 357, 436, 471, 595
PsiI TTATAA 2 cut(s) 149, 734
PspN4I GGNNCC 1 cut(s) 165
PspPI GGNCC 2 cut(s) 163, 616
PsuI RGATCY 1 cut(s) 624
PvuII CAGCTG 1 cut(s) 469
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
SapI GCTCTTC 3 cut(s) 287, 364, 531
SaqAI TTAA 5 cut(s) 21, 75, 563, 621, 762
SatI GCNGC 7 cut(s) 60, 63, 272, 356, 435, 470, 594
Sau3AI GATC 3 cut(s) 4, 624, 724
Sau96I GGNCC 2 cut(s) 163, 616
ScrFI CCNGG 2 cut(s) 167, 168
SfaNI GCATC 1 cut(s) 490
SmaI CCCGGG 1 cut(s) 168
SmlI CTYRAG 1 cut(s) 620
SmoI CTYRAG 1 cut(s) 620
SphI GCATGC 1 cut(s) 593
Sse9I AATT 2 cut(s) 517, 607
SseBI AGGCCT 1 cut(s) 174
SsiI CCGC 7 cut(s) 60, 63, 272, 303, 387, 463, 769
StuI AGGCCT 1 cut(s) 174
StyD4I CCNGG 2 cut(s) 165, 166
TaaI ACNGT 3 cut(s) 19, 561, 719
TaqI TCGA 2 cut(s) 259, 343
TasI AATT 2 cut(s) 517, 607
TauI GCSGC 3 cut(s) 62, 65, 274
TfiI GAWTC 3 cut(s) 80, 101, 107
Tru1I TTAA 5 cut(s) 21, 75, 563, 621, 762
Tru9I TTAA 5 cut(s) 21, 75, 563, 621, 762
TscAI CASTG 1 cut(s) 22
TseFI GTSAC 1 cut(s) 412
TseI GCWGC 4 cut(s) 355, 434, 469, 593
Tsp45I GTSAC 1 cut(s) 412
TspDTI ATGAA 1 cut(s) 518
TspGWI ACGGA 3 cut(s) 73, 236, 419
TspMI CCCGGG 1 cut(s) 166
TspRI CASTG 1 cut(s) 22
Vha464I CTTAAG 1 cut(s) 620
XapI RAATTY 1 cut(s) 517
XceI RCATGY 1 cut(s) 593
XmaI CCCGGG 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.