Rh2CG598400

OST-HTH/LOTUS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000679
Physical Location & Seq
Forward (+)
77389031 .. 77394603
5573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG598400.1

Sequence Viewer

Length: 1410 bp
ATGGAAGTGCGTCGGAGTCTCAACTTCAATTTGGTAATTCACTCAAGTGAAAAGGATTTGAGCACTGTGAAACTTTTAAGTGAAAAAACTAAAAAGATTGCTGAGGTGGCTTATTCATATGCCGTTAAAGGGCGCGCAGCTTCTCTGACTGCTCTACTCATCGTCGCCGCCGAGAAGGTTAACAATTCCGTCTTGGAATTGCGTGATTCCGACTCAGGTCGCAAGGAGAAGCTCTTCGGAGTTGTAGCTCAGAGCAGCGGTGGTGGGGACAAGAAGGTGACTTCGCCACTTATCCTTGCAGCTCAGCGAGGAGATGGAGGTGTTATCCAGCTGCTTCTGAAGACAAATATACATGTCAACGATGCTGATGCAGATGGAAATTCTGCTCTTCATTGGATACTTGGGTTGTCGAGATTATCGTGTCCACTACAGATAAGAATTGTATTGCTTCTCATTGAGCATGGCGCCCTAGTAAGCCAAAGGAATAAATTGGGGTTGACAGCATTTCATATTGCTGCCGGTAATGGTAAAGCTGAGGCCCTTGAGTATTGGTCTTCAGAGCCTGCCTCATTAGTTGAAGGTTTGAACGCTAACATTTATTTTGTACATGAATTTATGGAATACTGTCCAAATGCCAGTACGCAAAGAGCTATAGACCTGGCAACCTCTCAAGAGATGCGTTACATATTGCTGAATCCAACCACTATTAGCCTTATTAATGATGCCTTCCCCTATCAGCTTAAATGTATGGCTTTAGAGTTGGCAGATGAAGAGACCACTACCAAAAGGCATACTCGTGCGTGTTTATATCTTTACTTTGTTCACGGTTCTCAAGTTGTTACCCCTGTGAATGCTAGAAATGTCAACTCAAGCACCAAGGCAGACGTTTGTAAGTACTTCAACCGTCATCAAGGATGTGTCAGAGGAGCAAAGTGCTTTAATTCACATTGTGAGGAGTCTCAGAAAGTGAAGGAGGGACAAGACAGGAATCATTCTTCTGCTGATAAACTACTCAAACGCAAAATCTTTGTTGGAAGACTTCCTCCTTCAGTGGACTCTGATGCTTTGAGAAAGCTCTGCGAAGAAGAGTTTGGATCAGTGGAAGATGCTGTAGTTATTGTAACTCAAATAGAAAACAAGATACAATCTCGAGGCTTTGGTTTTGTCACATTTAGAGGGCAGAAATCTGCTTCAGAAGCCATGCTAGCGCCCTACATCACCTTGAGAGGCAAGAAAGTTGAAATAAAAAGTTTGATTCCAAAAATGGTTTTGGGAGCTGACCTTGGAAAATGTCACCTCAACCACAAGATCAAGAGAAGAGTTTTCAATACCAGCTTCCACTGCAGAAGCCGAACGAGAATATTGTGGAAGGTGATAACCCTGAACAAAGTTCTTGGGCTGATAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 OST-HTH RRM_1

Protein Analysis

469

Amino Acids

51.97

Weight (kDa)

9.34

Isoelectric Point (pI)

41.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 97 - 183 6.3e-08 Ankyrin repeats (3 copies)
RRM_1 PF00076 342 - 413 1.4e-11 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 464
AccII CGCG 1 cut(s) 135
AciI CCGC 2 cut(s) 168, 258
AclWI GGATC 1 cut(s) 1102
AcsI RAATTY 2 cut(s) 379, 611
AcuI CTGAAG 4 cut(s) 359, 540, 1032, 1176
AcyI GRCGYC 1 cut(s) 465
AdeI CACNNNGTG 1 cut(s) 950
AfaI GTAC 3 cut(s) 606, 640, 896
AfiI CCNNNNNNNGG 1 cut(s) 129
AflIII ACRYGT 1 cut(s) 352
AgsI TTSAA 6 cut(s) 28, 578, 586, 901, 1241, 1327
AjnI CCWGG 1 cut(s) 657
AjuI GAANNNNNNNTTGG 2 cut(s) 1074, 1106
AleI CACNNNNGTG 1 cut(s) 45
Alw21I GWGCWC 1 cut(s) 65
Alw26I GTCTC 3 cut(s) 23, 767, 963
AlwI GGATC 1 cut(s) 1102
AlwNI CAGNNNCTG 1 cut(s) 563
Ama87I CYCGRG 1 cut(s) 1149
AoxI GGCC 1 cut(s) 537
ApeKI GCWGC 5 cut(s) 137, 255, 299, 331, 515
ApoI RAATTY 2 cut(s) 379, 611
AseI ATTAAT 1 cut(s) 717
Asp700I GAANNNNTTC 1 cut(s) 233
AspLEI GCGC 4 cut(s) 135, 137, 467, 1210
AspS9I GGNCC 1 cut(s) 538
AsuHPI GGTGA 4 cut(s) 289, 1210, 1286, 1384
AsuNHI GCTAGC 1 cut(s) 1204
AvaI CYCGRG 1 cut(s) 1149
BaeI ACNNNNGTAYC 2 cut(s) 389, 422
BanI GGYRCC 1 cut(s) 464
BauI CACGAG 1 cut(s) 795
BbsI GAAGAC 3 cut(s) 347, 546, 1042
Bbv12I GWGCWC 1 cut(s) 65
BbvCI CCTCAGC 2 cut(s) 102, 534
BbvI GCAGC 5 cut(s) 149, 267, 311, 318, 502
BccI CCATC 2 cut(s) 308, 368
BceAI ACGGC 1 cut(s) 107
BcgI CGANNNNNNTGC 2 cut(s) 350, 384
BciT130I CCWGG 1 cut(s) 659
BciVI GTATCC 1 cut(s) 390
BcoDI GTCTC 3 cut(s) 23, 767, 963
BfaI CTAG 3 cut(s) 470, 855, 1205
BfmI CTRYAG 4 cut(s) 428, 651, 1110, 1342
BfoI RGCGCY 2 cut(s) 468, 1211
BfuI GTATCC 1 cut(s) 390
BisI GCNGC 6 cut(s) 138, 168, 256, 300, 332, 516
BlpI GCTNAGC 1 cut(s) 303
BlsI GCNGC 6 cut(s) 139, 169, 257, 301, 333, 517
BmcAI AGTACT 1 cut(s) 896
Bme1390I CCNGG 1 cut(s) 659
BmeT110I CYCGRG 1 cut(s) 1149
BmgT120I GGNCC 1 cut(s) 538
BmiI GGNNCC 1 cut(s) 466
BmrFI CCNGG 1 cut(s) 659
BmsI GCATC 6 cut(s) 352, 358, 666, 712, 1051, 1096
BmtI GCTAGC 1 cut(s) 1208
BoxI GACNNNNGTC 1 cut(s) 216
BpiI GAAGAC 3 cut(s) 347, 546, 1042
BplI GAGNNNNNCTC 2 cut(s) 551, 583
Bpu10I CCTNAGC 2 cut(s) 102, 534
Bpu1102I GCTNAGC 1 cut(s) 303
BpuEI CTTGAG 6 cut(s) 28, 563, 654, 816, 853, 1243
BsaHI GRCGYC 1 cut(s) 465
BsaI GGTCTC 1 cut(s) 767
BsaJI CCNNGG 2 cut(s) 876, 1282
Bsc4I CCNNNNNNNGG 1 cut(s) 129
Bse118I RCCGGY 1 cut(s) 518
Bse1I ACTGG 1 cut(s) 636
BseBI CCWGG 1 cut(s) 659
BseDI CCNNGG 2 cut(s) 876, 1282
BseGI GGATG 1 cut(s) 920
BseLI CCNNNNNNNGG 1 cut(s) 129
BseMII CTCAG 6 cut(s) 93, 228, 263, 317, 525, 974
BseNI ACTGG 1 cut(s) 636
BsePI GCGCGC 1 cut(s) 133
BseRI GAGGAG 3 cut(s) 324, 939, 968
BseXI GCAGC 5 cut(s) 149, 267, 311, 318, 502
Bsh1236I CGCG 1 cut(s) 135
BshFI GGCC 1 cut(s) 539
BshNI GGYRCC 1 cut(s) 464
BsiHKAI GWGCWC 1 cut(s) 65
BsiHKCI CYCGRG 1 cut(s) 1149
BsiSI CCGG 1 cut(s) 519
BslFI GGGAC 2 cut(s) 281, 990
BslI CCNNNNNNNGG 1 cut(s) 129
BsmAI GTCTC 3 cut(s) 23, 767, 963
BsmFI GGGAC 2 cut(s) 281, 990
BsmI GAATGC 1 cut(s) 856
BsnI GGCC 1 cut(s) 539
Bso31I GGTCTC 1 cut(s) 767
BsoBI CYCGRG 1 cut(s) 1149
Bsp1286I GDGCHC 1 cut(s) 65
Bsp1407I TGTACA 1 cut(s) 604
Bsp143I GATC 2 cut(s) 1094, 1308
Bsp1720I GCTNAGC 1 cut(s) 303
BspACI CCGC 2 cut(s) 168, 258
BspANI GGCC 1 cut(s) 539
BspCNI CTCAG 6 cut(s) 94, 227, 262, 316, 526, 973
BspFNI CGCG 1 cut(s) 135
BspLI GGNNCC 1 cut(s) 466
BspMAI CTGCAG 1 cut(s) 1346
BspOI GCTAGC 1 cut(s) 1208
BspPI GGATC 1 cut(s) 1102
BspQI GCTCTTC 2 cut(s) 239, 393
BspT107I GGYRCC 1 cut(s) 464
BspTNI GGTCTC 1 cut(s) 767
BsrFI RCCGGY 1 cut(s) 518
BsrGI TGTACA 1 cut(s) 604
BsrI ACTGG 1 cut(s) 636
BssAI RCCGGY 1 cut(s) 518
BssECI CCNNGG 2 cut(s) 876, 1282
BssHII GCGCGC 1 cut(s) 133
BssMI GATC 2 cut(s) 1094, 1308
BssNI GRCGYC 1 cut(s) 465
BssSI CACGAG 1 cut(s) 795
BssT1I CCWWGG 2 cut(s) 876, 1282
Bst2BI CACGAG 1 cut(s) 795
Bst2UI CCWGG 1 cut(s) 659
Bst4CI ACNGT 4 cut(s) 67, 626, 827, 905
Bst6I CTCTTC 5 cut(s) 239, 393, 765, 1080, 1312
BstACI GRCGYC 1 cut(s) 465
BstAUI TGTACA 1 cut(s) 604
BstC8I GCNNGC 3 cut(s) 135, 564, 1206
BstDEI CTNAG 6 cut(s) 102, 214, 249, 303, 534, 960
BstF5I GGATG 1 cut(s) 920
BstFNI CGCG 1 cut(s) 135
BstH2I RGCGCY 2 cut(s) 468, 1211
BstHHI GCGC 4 cut(s) 135, 137, 467, 1210
BstKTI GATC 2 cut(s) 1097, 1311
BstMAI GTCTC 3 cut(s) 23, 767, 963
BstMBI GATC 2 cut(s) 1094, 1308
BstMWI GCNNNNNNNGC 4 cut(s) 107, 1196, 1205, 1341
BstNI CCWGG 1 cut(s) 659
BstNSI RCATGY 1 cut(s) 356
BstPAI GACNNNNGTC 1 cut(s) 216
BstSCI CCNGG 1 cut(s) 657
BstSFI CTRYAG 4 cut(s) 428, 651, 1110, 1342
BstUI CGCG 1 cut(s) 135
BstV1I GCAGC 5 cut(s) 149, 267, 311, 318, 502
BstV2I GAAGAC 3 cut(s) 347, 546, 1042
BsuI GTATCC 1 cut(s) 390
BsuRI GGCC 1 cut(s) 539
BtsCI GGATG 1 cut(s) 920
BtsI GCAGTG 1 cut(s) 1339
BtsIMutI CAGTG 4 cut(s) 63, 1056, 1104, 1339
Cac8I GCNNGC 3 cut(s) 135, 564, 1206
CaiI CAGNNNCTG 1 cut(s) 563
CfoI GCGC 4 cut(s) 135, 137, 467, 1210
Cfr10I RCCGGY 1 cut(s) 518
Cfr13I GGNCC 1 cut(s) 538
Csp6I GTAC 3 cut(s) 605, 639, 895
CviAII CATG 4 cut(s) 353, 461, 608, 1201
CviQI GTAC 3 cut(s) 605, 639, 895
DdeI CTNAG 6 cut(s) 102, 214, 249, 303, 534, 960
DinI GGCGCC 1 cut(s) 466
DpnI GATC 2 cut(s) 1096, 1310
DpnII GATC 2 cut(s) 1094, 1308
DraIII CACNNNGTG 1 cut(s) 950
Eam1104I CTCTTC 5 cut(s) 239, 393, 765, 1080, 1312
EarI CTCTTC 5 cut(s) 239, 393, 765, 1080, 1312
Eco130I CCWWGG 2 cut(s) 876, 1282
Eco31I GGTCTC 1 cut(s) 767
Eco57I CTGAAG 4 cut(s) 359, 540, 1032, 1176
Eco88I CYCGRG 1 cut(s) 1149
EcoO109I RGGNCCY 1 cut(s) 538
EcoRII CCWGG 1 cut(s) 657
EcoT14I CCWWGG 2 cut(s) 876, 1282
EgeI GGCGCC 1 cut(s) 466
EheI GGCGCC 1 cut(s) 466
ErhI CCWWGG 2 cut(s) 876, 1282
FaeI CATG 4 cut(s) 356, 464, 611, 1204
FaqI GGGAC 2 cut(s) 281, 990
FatI CATG 4 cut(s) 352, 460, 607, 1200
FauNDI CATATG 1 cut(s) 118
Fnu4HI GCNGC 6 cut(s) 138, 168, 256, 300, 332, 516
FokI GGATG 1 cut(s) 927
Fsp4HI GCNGC 6 cut(s) 138, 168, 256, 300, 332, 516
FspBI CTAG 3 cut(s) 470, 855, 1205
GlaI GCGC 4 cut(s) 134, 136, 466, 1209
GluI GCNGC 6 cut(s) 138, 168, 256, 300, 332, 516
HaeII RGCGCY 2 cut(s) 468, 1211
HaeIII GGCC 1 cut(s) 539
HapII CCGG 1 cut(s) 519
HhaI GCGC 4 cut(s) 135, 137, 467, 1210
Hin1I GRCGYC 1 cut(s) 465
Hin1II CATG 4 cut(s) 356, 464, 611, 1204
Hin6I GCGC 4 cut(s) 133, 135, 465, 1208
HinP1I GCGC 4 cut(s) 133, 135, 465, 1208
HincII GTYRAC 4 cut(s) 181, 358, 498, 865
HindII GTYRAC 4 cut(s) 181, 358, 498, 865
HinfI GANTC 8 cut(s) 16, 206, 212, 694, 956, 988, 1055, 1255
HpaI GTTAAC 1 cut(s) 181
HpaII CCGG 1 cut(s) 519
HphI GGTGA 4 cut(s) 289, 1210, 1286, 1384
Hpy166II GTNNAC 7 cut(s) 181, 358, 425, 498, 823, 865, 1054
Hpy188III TCNNGA 4 cut(s) 411, 671, 1149, 1312
Hpy8I GTNNAC 7 cut(s) 181, 358, 425, 498, 823, 865, 1054
Hpy99I CGWCG 2 cut(s) 15, 167
HpyAV CCTTC 7 cut(s) 169, 268, 572, 736, 964, 1056, 1363
HpyCH4III ACNGT 4 cut(s) 67, 626, 827, 905
HpyCH4IV ACGT 1 cut(s) 885
HpyCH4V TGCA 3 cut(s) 299, 371, 1344
HpyF10VI GCNNNNNNNGC 4 cut(s) 107, 1196, 1205, 1341
HpyF3I CTNAG 6 cut(s) 102, 214, 249, 303, 534, 960
HpySE526I ACGT 1 cut(s) 885
Hsp92I GRCGYC 1 cut(s) 465
Hsp92II CATG 4 cut(s) 356, 464, 611, 1204
HspAI GCGC 4 cut(s) 133, 135, 465, 1208
KasI GGCGCC 1 cut(s) 464
KspAI GTTAAC 1 cut(s) 181
Kzo9I GATC 2 cut(s) 1094, 1308
LguI GCTCTTC 2 cut(s) 239, 393
LmnI GCTCC 2 cut(s) 926, 1274
Lsp1109I GCAGC 5 cut(s) 149, 267, 311, 318, 502
LweI GCATC 6 cut(s) 352, 358, 666, 712, 1051, 1096
MaeI CTAG 3 cut(s) 470, 855, 1205
MaeII ACGT 1 cut(s) 885
MaeIII GTNAC 6 cut(s) 277, 680, 838, 1120, 1165, 1292
MalI GATC 2 cut(s) 1096, 1310
MboI GATC 2 cut(s) 1094, 1308
MhlI GDGCHC 1 cut(s) 65
MluCI AATT 9 cut(s) 28, 36, 184, 197, 379, 438, 488, 611, 940
Mly113I GGCGCC 1 cut(s) 465
MlyI GAGTC 4 cut(s) 25, 206, 965, 1049
MmeI TCCRAC 3 cut(s) 234, 722, 1012
MroXI GAANNNNTTC 1 cut(s) 233
MseI TTAA 6 cut(s) 77, 126, 180, 717, 741, 939
MslI CAYNNNNRTG 2 cut(s) 45, 795
MspA1I CMGCKG 2 cut(s) 258, 331
MspI CCGG 1 cut(s) 519
MspR9I CCNGG 1 cut(s) 659
Mva1269I GAATGC 1 cut(s) 856
MvaI CCWGG 1 cut(s) 659
MvnI CGCG 1 cut(s) 135
MwoI GCNNNNNNNGC 4 cut(s) 107, 1196, 1205, 1341
NarI GGCGCC 1 cut(s) 465
NdeI CATATG 1 cut(s) 118
NdeII GATC 2 cut(s) 1094, 1308
NheI GCTAGC 1 cut(s) 1204
NlaIII CATG 4 cut(s) 356, 464, 611, 1204
NlaIV GGNNCC 1 cut(s) 466
NmeAIII GCCGAG 1 cut(s) 196
NmuCI GTSAC 3 cut(s) 277, 1165, 1292
NspI RCATGY 1 cut(s) 356
OliI CACNNNNGTG 1 cut(s) 45
PaeR7I CTCGAG 1 cut(s) 1149
PauI GCGCGC 1 cut(s) 133
PciI ACATGT 1 cut(s) 352
PciSI GCTCTTC 2 cut(s) 239, 393
PcsI WCGNNNNNNNCGW 2 cut(s) 168, 416
PctI GAATGC 1 cut(s) 856
PdmI GAANNNNTTC 1 cut(s) 233
PfeI GAWTC 4 cut(s) 206, 694, 988, 1255
PkrI GCNGC 6 cut(s) 139, 169, 257, 301, 333, 517
PleI GAGTC 4 cut(s) 24, 206, 964, 1049
PluTI GGCGCC 1 cut(s) 468
PpsI GAGTC 4 cut(s) 24, 206, 964, 1049
PscI ACATGT 1 cut(s) 352
PshAI GACNNNNGTC 1 cut(s) 216
PshBI ATTAAT 1 cut(s) 717
Psp6I CCWGG 1 cut(s) 657
PspGI CCWGG 1 cut(s) 657
PspN4I GGNNCC 1 cut(s) 466
PspPI GGNCC 1 cut(s) 538
PstI CTGCAG 1 cut(s) 1346
PstNI CAGNNNCTG 1 cut(s) 563
PteI GCGCGC 1 cut(s) 133
PvuII CAGCTG 1 cut(s) 331
RsaI GTAC 3 cut(s) 606, 640, 896
RsaNI GTAC 3 cut(s) 605, 639, 895
RseI CAYNNNNRTG 2 cut(s) 45, 795
SapI GCTCTTC 2 cut(s) 239, 393
SaqAI TTAA 6 cut(s) 77, 126, 180, 717, 741, 939
SatI GCNGC 6 cut(s) 138, 168, 256, 300, 332, 516
Sau3AI GATC 2 cut(s) 1094, 1308
Sau96I GGNCC 1 cut(s) 538
ScaI AGTACT 1 cut(s) 896
SchI GAGTC 4 cut(s) 25, 206, 965, 1049
ScrFI CCNGG 1 cut(s) 659
SduI GDGCHC 1 cut(s) 65
SfaNI GCATC 6 cut(s) 352, 358, 666, 712, 1051, 1096
SfcI CTRYAG 4 cut(s) 428, 651, 1110, 1342
SfoI GGCGCC 1 cut(s) 466
Sfr274I CTCGAG 1 cut(s) 1149
SlaI CTCGAG 1 cut(s) 1149
SmiMI CAYNNNNRTG 2 cut(s) 45, 795
SmlI CTYRAG 7 cut(s) 43, 542, 669, 831, 868, 1149, 1222
SmoI CTYRAG 7 cut(s) 43, 542, 669, 831, 868, 1149, 1222
Sse9I AATT 9 cut(s) 28, 36, 184, 197, 379, 438, 488, 611, 940
SsiI CCGC 2 cut(s) 168, 258
SspDI GGCGCC 1 cut(s) 464
SspI AATATT 1 cut(s) 1362
SspMI CTAG 3 cut(s) 470, 855, 1205
StyD4I CCNGG 1 cut(s) 657
StyI CCWWGG 2 cut(s) 876, 1282
TaaI ACNGT 4 cut(s) 67, 626, 827, 905
TaiI ACGT 1 cut(s) 888
TaqI TCGA 2 cut(s) 410, 1150
TasI AATT 9 cut(s) 28, 36, 184, 197, 379, 438, 488, 611, 940
TatI WGTACW 2 cut(s) 604, 894
TauI GCSGC 1 cut(s) 170
TfiI GAWTC 4 cut(s) 206, 694, 988, 1255
Tru1I TTAA 6 cut(s) 77, 126, 180, 717, 741, 939
Tru9I TTAA 6 cut(s) 77, 126, 180, 717, 741, 939
TscAI CASTG 4 cut(s) 70, 1056, 1104, 1346
TseFI GTSAC 3 cut(s) 277, 1165, 1292
TseI GCWGC 5 cut(s) 137, 255, 299, 331, 515
Tsp45I GTSAC 3 cut(s) 277, 1165, 1292
TspDTI ATGAA 5 cut(s) 105, 380, 497, 624, 783
TspGWI ACGGA 1 cut(s) 178
TspRI CASTG 4 cut(s) 70, 1056, 1104, 1346
VspI ATTAAT 1 cut(s) 717
XapI RAATTY 2 cut(s) 379, 611
XceI RCATGY 1 cut(s) 356
XhoI CTCGAG 1 cut(s) 1149
XmnI GAANNNNTTC 1 cut(s) 233
XspI CTAG 3 cut(s) 470, 855, 1205
ZrmI AGTACT 1 cut(s) 896
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.