Rh6CG029500

ankyrin repeats

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000679
Physical Location & Seq
Forward (+)
2648432 .. 2650824
2393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG029500.1

Sequence Viewer

Length: 852 bp
ATGAAGTGCTGCATTCCAAACAGGATTATGAGACATCCTGAAGTCATATTTAAGCTAGGAGAGTACGCTCGTGATAGGCCCGTGAGAAAGAATGTTGATTCATATACCTGTTTTATTCTTGGTGTGCAATCTGAGGAACCGACTCTTTATCGACTTGACCGTGAGCTTGATCCGCCTTTAAAGAAATGTGATGGTGTAAAATTAAGTGGCACCGGGGATGTAGCGGCTTATGAAGCATTGATAGAAGAAACGGAGGAACCTATGGAAGGTTTTCATGTAAAAGACACACATAAAAAATGTAAATACGCATTGCTTAAGGCAGCTCTAACGGATCCCTGTACTGGTGGTATTTTAACTGTGGCATATATTGATGATGATGGAATGGAAAGAATGTCAAGCAATACGGTTGTAGAATTGTATATACAATTTTACGACAAGTTCCGTTATCTTGAAGACCGAAGTGTGTTTCTATTTTATGATAATGTTCAAAAGAAAAAGCTTTCGTCATTTCTTCGAAAGAAAATCACTGCGGAAGCTGTTATAGAAGTTGGTCATCCTCTGACACAATTAGATGGAGGGGAAGTTTTGCTACAAACAGATGATGAAGGGGTCACTATGTTAGACATTGAGATTCATATGCAGCGGATGGTATTTAAAAACAACACAGATGCTATTAATTTCTTCAACAAAGCTATAGCAGTTAAAAATGATGTGCCTTTTTCTTCATCTGCACATGCCTTTAGATTCTATAACTCTTTCAGCAGGAAGATATACGTTGCCAAACAATCTATTGAACTTTTAGAGTCTTTAGTCATTTTGAGAAATCTACCAAACCCTTTGTACTTACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 OST-HTH RRM_1

Protein Analysis

283

Amino Acids

32.43

Weight (kDa)

5.93

Isoelectric Point (pI)

45.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 209
AciI CCGC 4 cut(s) 173, 224, 530, 643
AclWI GGATC 3 cut(s) 164, 326, 339
AcuI CTGAAG 1 cut(s) 60
AfaI GTAC 3 cut(s) 65, 340, 842
AfiI CCNNNNNNNGG 2 cut(s) 266, 341
AflII CTTAAG 1 cut(s) 314
AgsI TTSAA 4 cut(s) 452, 488, 685, 794
AluBI AGCT 6 cut(s) 55, 166, 323, 499, 536, 692
AluI AGCT 6 cut(s) 55, 166, 323, 499, 536, 692
Alw26I GTCTC 1 cut(s) 25
AlwI GGATC 3 cut(s) 164, 326, 339
AoxI GGCC 1 cut(s) 77
ApeKI GCWGC 3 cut(s) 9, 320, 640
AseI ATTAAT 1 cut(s) 675
Asp700I GAANNNNTTC 1 cut(s) 270
AspS9I GGNCC 1 cut(s) 78
AsuC2I CCSGG 1 cut(s) 214
AsuII TTCGAA 1 cut(s) 514
BamHI GGATCC 1 cut(s) 331
BanI GGYRCC 1 cut(s) 209
BarI GAAGNNNNNNTAC 2 cut(s) 573, 605
BauI CACGAG 1 cut(s) 69
BbsI GAAGAC 1 cut(s) 459
BbvI GCAGC 2 cut(s) 332, 652
BccI CCATC 4 cut(s) 185, 371, 566, 640
BcnI CCSGG 1 cut(s) 214
BcoDI GTCTC 1 cut(s) 25
BfaI CTAG 1 cut(s) 56
BfmI CTRYAG 1 cut(s) 693
BfrI CTTAAG 1 cut(s) 314
BisI GCNGC 4 cut(s) 10, 225, 321, 641
BlsI GCNGC 4 cut(s) 11, 226, 322, 642
Bme1390I CCNGG 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 78
BmiI GGNNCC 4 cut(s) 138, 211, 258, 333
BmrFI CCNGG 1 cut(s) 214
BmsI GCATC 1 cut(s) 658
BpiI GAAGAC 1 cut(s) 459
Bpu14I TTCGAA 1 cut(s) 514
BpuMI CCSGG 1 cut(s) 214
BsaJI CCNNGG 1 cut(s) 213
BsaXI ACNNNNNCTCC 2 cut(s) 567, 597
Bsc4I CCNNNNNNNGG 2 cut(s) 266, 341
Bse1I ACTGG 1 cut(s) 346
Bse3DI GCAATG 1 cut(s) 308
BseDI CCNNGG 1 cut(s) 213
BseGI GGATG 4 cut(s) 34, 223, 553, 651
BseLI CCNNNNNNNGG 2 cut(s) 266, 341
BseMI GCAATG 1 cut(s) 308
BseMII CTCAG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 346
BseXI GCAGC 2 cut(s) 332, 652
BsgI GTGCAG 1 cut(s) 714
BshFI GGCC 1 cut(s) 79
BshNI GGYRCC 1 cut(s) 209
BsiSI CCGG 1 cut(s) 213
BslI CCNNNNNNNGG 2 cut(s) 266, 341
BsmAI GTCTC 1 cut(s) 25
BsmI GAATGC 1 cut(s) 12
BsnI GGCC 1 cut(s) 79
Bsp119I TTCGAA 1 cut(s) 514
Bsp143I GATC 2 cut(s) 169, 331
BspACI CCGC 4 cut(s) 173, 224, 530, 643
BspANI GGCC 1 cut(s) 79
BspCNI CTCAG 1 cut(s) 124
BspLI GGNNCC 4 cut(s) 138, 211, 258, 333
BspPI GGATC 3 cut(s) 164, 326, 339
BspT104I TTCGAA 1 cut(s) 514
BspT107I GGYRCC 1 cut(s) 209
BspTI CTTAAG 1 cut(s) 314
BsrDI GCAATG 1 cut(s) 308
BsrI ACTGG 1 cut(s) 346
BssECI CCNNGG 1 cut(s) 213
BssMI GATC 2 cut(s) 169, 331
BssSI CACGAG 1 cut(s) 69
Bst2BI CACGAG 1 cut(s) 69
Bst4CI ACNGT 3 cut(s) 161, 358, 406
BstAFI CTTAAG 1 cut(s) 314
BstBI TTCGAA 1 cut(s) 514
BstDEI CTNAG 2 cut(s) 132, 849
BstENI CCTNNNNNAGG 1 cut(s) 264
BstF5I GGATG 4 cut(s) 34, 223, 553, 651
BstKTI GATC 2 cut(s) 172, 334
BstMAI GTCTC 1 cut(s) 25
BstMBI GATC 2 cut(s) 169, 331
BstMWI GCNNNNNNNGC 2 cut(s) 172, 233
BstNSI RCATGY 1 cut(s) 737
BstSCI CCNGG 1 cut(s) 212
BstSFI CTRYAG 1 cut(s) 693
BstV1I GCAGC 2 cut(s) 332, 652
BstV2I GAAGAC 1 cut(s) 459
BstX2I RGATCY 1 cut(s) 331
BstYI RGATCY 1 cut(s) 331
BsuRI GGCC 1 cut(s) 79
BtsCI GGATG 4 cut(s) 34, 223, 553, 651
BtsI GCAGTG 1 cut(s) 525
BtsIMutI CAGTG 1 cut(s) 525
Cfr13I GGNCC 1 cut(s) 78
Csp6I GTAC 3 cut(s) 64, 339, 841
CviAII CATG 2 cut(s) 275, 734
CviJI RGCY 8 cut(s) 55, 79, 166, 227, 323, 499, 536, 692
CviKI_1 RGCY 8 cut(s) 55, 79, 166, 227, 323, 499, 536, 692
CviQI GTAC 3 cut(s) 64, 339, 841
DdeI CTNAG 2 cut(s) 132, 849
DpnI GATC 2 cut(s) 171, 333
DpnII GATC 2 cut(s) 169, 331
DraI TTTAAA 2 cut(s) 180, 655
EciI GGCGGA 1 cut(s) 162
Eco57I CTGAAG 1 cut(s) 60
EcoNI CCTNNNNNAGG 1 cut(s) 264
FaeI CATG 2 cut(s) 278, 737
FatI CATG 2 cut(s) 274, 733
FauNDI CATATG 1 cut(s) 636
Fnu4HI GCNGC 4 cut(s) 10, 225, 321, 641
FokI GGATG 4 cut(s) 21, 230, 540, 658
Fsp4HI GCNGC 4 cut(s) 10, 225, 321, 641
FspBI CTAG 1 cut(s) 56
GluI GCNGC 4 cut(s) 10, 225, 321, 641
HaeIII GGCC 1 cut(s) 79
HapII CCGG 1 cut(s) 213
Hin1II CATG 2 cut(s) 278, 737
HindIII AAGCTT 1 cut(s) 497
HinfI GANTC 5 cut(s) 98, 142, 631, 744, 803
HpaII CCGG 1 cut(s) 213
Hpy188I TCNGA 2 cut(s) 133, 561
Hpy188III TCNNGA 3 cut(s) 38, 71, 449
HpyAV CCTTC 2 cut(s) 260, 599
HpyCH4III ACNGT 3 cut(s) 161, 358, 406
HpyCH4IV ACGT 1 cut(s) 774
HpyCH4V TGCA 4 cut(s) 12, 127, 640, 731
HpyF10VI GCNNNNNNNGC 2 cut(s) 172, 233
HpyF3I CTNAG 2 cut(s) 132, 849
HpySE526I ACGT 1 cut(s) 774
Hsp92II CATG 2 cut(s) 278, 737
Kzo9I GATC 2 cut(s) 169, 331
LpnPI CCDG 7 cut(s) 7, 51, 121, 226, 327, 349, 748
Lsp1109I GCAGC 2 cut(s) 332, 652
LweI GCATC 1 cut(s) 658
MaeI CTAG 1 cut(s) 56
MaeII ACGT 1 cut(s) 774
MaeIII GTNAC 1 cut(s) 610
MalI GATC 2 cut(s) 171, 333
MboI GATC 2 cut(s) 169, 331
MboII GAAGA 6 cut(s) 257, 464, 503, 673, 714, 778
MflI RGATCY 1 cut(s) 331
MluCI AATT 5 cut(s) 200, 413, 425, 566, 676
MlyI GAGTC 2 cut(s) 136, 812
MnlI CCTC 4 cut(s) 127, 247, 567, 569
MroXI GAANNNNTTC 1 cut(s) 270
MseI TTAA 8 cut(s) 51, 179, 203, 315, 353, 654, 675, 702
MspA1I CMGCKG 1 cut(s) 643
MspCI CTTAAG 1 cut(s) 314
MspI CCGG 1 cut(s) 213
MspR9I CCNGG 1 cut(s) 214
Mva1269I GAATGC 1 cut(s) 12
MwoI GCNNNNNNNGC 2 cut(s) 172, 233
NciI CCSGG 1 cut(s) 214
NdeI CATATG 1 cut(s) 636
NdeII GATC 2 cut(s) 169, 331
NlaIII CATG 2 cut(s) 278, 737
NlaIV GGNNCC 4 cut(s) 138, 211, 258, 333
NmuCI GTSAC 1 cut(s) 610
NspI RCATGY 1 cut(s) 737
NspV TTCGAA 1 cut(s) 514
PcsI WCGNNNNNNNCGW 1 cut(s) 157
PctI GAATGC 1 cut(s) 12
PdmI GAANNNNTTC 1 cut(s) 270
PfeI GAWTC 3 cut(s) 98, 631, 744
PkrI GCNGC 4 cut(s) 11, 226, 322, 642
PleI GAGTC 2 cut(s) 136, 811
PpsI GAGTC 2 cut(s) 136, 811
PshBI ATTAAT 1 cut(s) 675
PspN4I GGNNCC 4 cut(s) 138, 211, 258, 333
PspPI GGNCC 1 cut(s) 78
PsuI RGATCY 1 cut(s) 331
RsaI GTAC 3 cut(s) 65, 340, 842
RsaNI GTAC 3 cut(s) 64, 339, 841
SaqAI TTAA 8 cut(s) 51, 179, 203, 315, 353, 654, 675, 702
SatI GCNGC 4 cut(s) 10, 225, 321, 641
Sau3AI GATC 2 cut(s) 169, 331
Sau96I GGNCC 1 cut(s) 78
SchI GAGTC 2 cut(s) 136, 812
ScrFI CCNGG 1 cut(s) 214
SfaNI GCATC 1 cut(s) 658
SfcI CTRYAG 1 cut(s) 693
SfuI TTCGAA 1 cut(s) 514
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
Sse9I AATT 5 cut(s) 200, 413, 425, 566, 676
SsiI CCGC 4 cut(s) 173, 224, 530, 643
SspMI CTAG 1 cut(s) 56
StyD4I CCNGG 1 cut(s) 212
TaaI ACNGT 3 cut(s) 161, 358, 406
TaiI ACGT 1 cut(s) 777
TaqI TCGA 2 cut(s) 151, 514
TaqII GACCGA 1 cut(s) 471
TasI AATT 5 cut(s) 200, 413, 425, 566, 676
TatI WGTACW 2 cut(s) 338, 840
TauI GCSGC 1 cut(s) 227
TfiI GAWTC 3 cut(s) 98, 631, 744
Tru1I TTAA 8 cut(s) 51, 179, 203, 315, 353, 654, 675, 702
Tru9I TTAA 8 cut(s) 51, 179, 203, 315, 353, 654, 675, 702
TscAI CASTG 1 cut(s) 532
TseFI GTSAC 1 cut(s) 610
TseI GCWGC 3 cut(s) 9, 320, 640
Tsp45I GTSAC 1 cut(s) 610
TspDTI ATGAA 7 cut(s) 17, 90, 246, 263, 618, 623, 714
TspGWI ACGGA 3 cut(s) 266, 344, 431
TspRI CASTG 1 cut(s) 532
Vha464I CTTAAG 1 cut(s) 314
VspI ATTAAT 1 cut(s) 675
XagI CCTNNNNNAGG 1 cut(s) 264
XceI RCATGY 1 cut(s) 737
XmnI GAANNNNTTC 1 cut(s) 270
XspI CTAG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.