Rh2AG608100

OST-HTH/LOTUS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000679
Physical Location & Seq
Forward (+)
83550300 .. 83554414
4115 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG608100.1

Sequence Viewer

Length: 996 bp
ATGCCGGAGGCTTTGGCCCTGGGCGGCCGTACAACGAAGCCGTCGAATTCAGAGAGAAGGAAGCGGTTGCTTTGCGAGATAGAGCTGCTTCAGCTCTTCGGAGTTGTAGCTCAGAGCGGTGGTGGGGACAAGAAGGTGACTTCGCCACTCATCCGTGCAGCTCAGCTGCTTCTGAAGACAAATATAGATGTCAATTATGCTGATGCAGATGGAAATTTTGCTCTTCATGGGATACTTGGGTTGTCGAGATTATCATGTCCACTACAGATGAGAATTGTATTGCTTCTTCTCGAGCATGGCGCTCTAGTCCTTCTGTTGGAAGACCCAGATGGAGTGCAGTATATGACGGAAATGAAAGAAACCCCCCTGTTTTTCGCTGTGAAGAATGAAAGTGAGGACTGTGCTATGCTTCTTTTGACCTGGGGAGCAAATAGTGAAGTCCTTAATCTACGTAGGCAAAGAGCTATAGACCTGGCAACCTCTCAAGAGATGCGTTATTTATTGCTGAATCCAACCACTATTAGCCTTATTGATCATGCCTTCCCCAATCAACTTGAATGTATGGCTCTGGAGTTGGCAGATGAATACACCACTACCAAAAGAAATGTTAACTCAAACACCAAGGCAGAGGTTTGTAAGTTCTTCAACTCTCATCAAGGATGTGTCAGGGGAGCAAAGTGCTTTAATGCACATTGTGAGGAGTGTCAGAAAGTGAAGGAGGAAGCAGACTGGAATCATTCTTCTGCTGCTAAACTAAAACGCAGAGTCTTTGTTGGAGGACTTCCTCTTTCAGTGGACTCTGATGCTTTGGGAAAGCTCTGTGAAAAAGAGTTTGGATCGGTGGAAGATGCTATAGTTATTGTAACTCGAATTGAAAACAAGATACAATCTCGTGGCTTTGGATTTGTCACATTTAGAGAGGAGAAATCTGCTTCGGAAGCCATACAAGCGCACTACATCACCATGAGAGGCAAGAAAGTTGAAATAAAAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 OST-HTH RRM_1

Protein Analysis

331

Amino Acids

36.82

Weight (kDa)

6.67

Isoelectric Point (pI)

43.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 256 - 327 4.4e-12 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 117
AciI CCGC 3 cut(s) 24, 64, 117
AclWI GGATC 1 cut(s) 844
AcoI YGGCCR 1 cut(s) 25
AcsI RAATTY 2 cut(s) 46, 214
AcuI CTGAAG 2 cut(s) 74, 194
AdeI CACNNNGTG 1 cut(s) 695
AfaI GTAC 1 cut(s) 31
AfiI CCNNNNNNNGG 1 cut(s) 316
AgsI TTSAA 4 cut(s) 557, 646, 875, 983
AjnI CCWGG 3 cut(s) 18, 419, 471
AjuI GAANNNNNNNTTGG 2 cut(s) 816, 848
AluBI AGCT 7 cut(s) 85, 94, 110, 161, 166, 464, 817
AluI AGCT 7 cut(s) 85, 94, 110, 161, 166, 464, 817
AlwI GGATC 1 cut(s) 844
Ama87I CYCGRG 1 cut(s) 290
AoxI GGCC 2 cut(s) 15, 25
ApeKI GCWGC 4 cut(s) 85, 158, 166, 746
ApoI RAATTY 2 cut(s) 46, 214
AspLEI GCGC 2 cut(s) 302, 952
AspS9I GGNCC 1 cut(s) 16
AsuHPI GGTGA 2 cut(s) 148, 952
AvaI CYCGRG 1 cut(s) 290
BaeI ACNNNNGTAYC 2 cut(s) 224, 257
BarI GAAGNNNNNNTAC 2 cut(s) 270, 302
BauI CACGAG 1 cut(s) 891
BbsI GAAGAC 2 cut(s) 182, 327
BbvI GCAGC 4 cut(s) 72, 153, 170, 733
BccI CCATC 2 cut(s) 203, 323
BceAI ACGGC 2 cut(s) 12, 25
BciT130I CCWGG 3 cut(s) 20, 421, 473
BciVI GTATCC 1 cut(s) 225
BclI TGATCA 1 cut(s) 532
BfaI CTAG 1 cut(s) 305
BfmI CTRYAG 3 cut(s) 263, 465, 852
BfoI RGCGCY 1 cut(s) 303
BfuI GTATCC 1 cut(s) 225
BisI GCNGC 5 cut(s) 25, 86, 159, 167, 747
BlpI GCTNAGC 1 cut(s) 162
BlsI GCNGC 5 cut(s) 26, 87, 160, 168, 748
Bme1390I CCNGG 3 cut(s) 20, 421, 473
BmeT110I CYCGRG 1 cut(s) 290
BmgT120I GGNCC 1 cut(s) 16
BmrFI CCNGG 3 cut(s) 20, 421, 473
BmsI GCATC 4 cut(s) 193, 480, 793, 838
BpiI GAAGAC 2 cut(s) 182, 327
BpmI CTGGAG 1 cut(s) 590
Bpu1102I GCTNAGC 1 cut(s) 162
BpuEI CTTGAG 1 cut(s) 468
BsaAI YACGTR 1 cut(s) 452
BsaJI CCNNGG 4 cut(s) 18, 19, 420, 621
Bsc4I CCNNNNNNNGG 1 cut(s) 316
Bse1I ACTGG 1 cut(s) 734
BseBI CCWGG 3 cut(s) 20, 421, 473
BseDI CCNNGG 4 cut(s) 18, 19, 420, 621
BseGI GGATG 2 cut(s) 150, 665
BseLI CCNNNNNNNGG 1 cut(s) 316
BseMII CTCAG 2 cut(s) 125, 176
BseNI ACTGG 1 cut(s) 734
BseRI GAGGAG 2 cut(s) 713, 935
BseX3I CGGCCG 1 cut(s) 25
BseXI GCAGC 4 cut(s) 72, 153, 170, 733
BsgI GTGCAG 2 cut(s) 177, 356
Bsh1285I CGRYCG 1 cut(s) 28
BshFI GGCC 2 cut(s) 17, 27
BsiEI CGRYCG 1 cut(s) 28
BsiHKCI CYCGRG 1 cut(s) 290
BsiSI CCGG 1 cut(s) 5
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 1 cut(s) 316
BsmFI GGGAC 1 cut(s) 140
BsnI GGCC 2 cut(s) 17, 27
BsoBI CYCGRG 1 cut(s) 290
Bsp143I GATC 2 cut(s) 532, 836
Bsp1720I GCTNAGC 1 cut(s) 162
BspACI CCGC 3 cut(s) 24, 64, 117
BspANI GGCC 2 cut(s) 17, 27
BspCNI CTCAG 2 cut(s) 124, 175
BspPI GGATC 1 cut(s) 844
BspQI GCTCTTC 2 cut(s) 101, 228
BsrBI CCGCTC 1 cut(s) 117
BsrI ACTGG 1 cut(s) 734
BssECI CCNNGG 4 cut(s) 18, 19, 420, 621
BssMI GATC 2 cut(s) 532, 836
BssSI CACGAG 1 cut(s) 891
BssT1I CCWWGG 1 cut(s) 621
Bst2BI CACGAG 1 cut(s) 891
Bst2UI CCWGG 3 cut(s) 20, 421, 473
Bst4CI ACNGT 1 cut(s) 401
Bst6I CTCTTC 2 cut(s) 101, 228
BstBAI YACGTR 1 cut(s) 452
BstDEI CTNAG 2 cut(s) 111, 162
BstF5I GGATG 2 cut(s) 150, 665
BstH2I RGCGCY 1 cut(s) 303
BstHHI GCGC 2 cut(s) 302, 952
BstKTI GATC 2 cut(s) 535, 839
BstMBI GATC 2 cut(s) 532, 836
BstMCI CGRYCG 1 cut(s) 28
BstMWI GCNNNNNNNGC 3 cut(s) 91, 938, 947
BstNI CCWGG 3 cut(s) 20, 421, 473
BstSCI CCNGG 3 cut(s) 18, 419, 471
BstSFI CTRYAG 3 cut(s) 263, 465, 852
BstSNI TACGTA 1 cut(s) 452
BstV1I GCAGC 4 cut(s) 72, 153, 170, 733
BstV2I GAAGAC 2 cut(s) 182, 327
BstZI CGGCCG 1 cut(s) 25
BsuI GTATCC 1 cut(s) 225
BsuRI GGCC 2 cut(s) 17, 27
BtsCI GGATG 2 cut(s) 150, 665
BtsIMutI CAGTG 1 cut(s) 798
CfoI GCGC 2 cut(s) 302, 952
Cfr13I GGNCC 1 cut(s) 16
Csp6I GTAC 1 cut(s) 30
CviAII CATG 5 cut(s) 227, 255, 296, 536, 964
CviQI GTAC 1 cut(s) 30
DdeI CTNAG 2 cut(s) 111, 162
DpnI GATC 2 cut(s) 534, 838
DpnII GATC 2 cut(s) 532, 836
DraIII CACNNNGTG 1 cut(s) 695
EaeI YGGCCR 1 cut(s) 25
EagI CGGCCG 1 cut(s) 25
Eam1104I CTCTTC 2 cut(s) 101, 228
EarI CTCTTC 2 cut(s) 101, 228
EclXI CGGCCG 1 cut(s) 25
Eco105I TACGTA 1 cut(s) 452
Eco130I CCWWGG 1 cut(s) 621
Eco52I CGGCCG 1 cut(s) 25
Eco57I CTGAAG 2 cut(s) 74, 194
Eco88I CYCGRG 1 cut(s) 290
EcoRI GAATTC 1 cut(s) 46
EcoRII CCWGG 3 cut(s) 18, 419, 471
EcoT14I CCWWGG 1 cut(s) 621
ErhI CCWWGG 1 cut(s) 621
FaeI CATG 5 cut(s) 230, 258, 299, 539, 967
FaqI GGGAC 1 cut(s) 140
FatI CATG 5 cut(s) 226, 254, 295, 535, 963
FbaI TGATCA 1 cut(s) 532
Fnu4HI GCNGC 5 cut(s) 25, 86, 159, 167, 747
FokI GGATG 2 cut(s) 137, 672
Fsp4HI GCNGC 5 cut(s) 25, 86, 159, 167, 747
FspBI CTAG 1 cut(s) 305
GlaI GCGC 2 cut(s) 301, 951
GluI GCNGC 5 cut(s) 25, 86, 159, 167, 747
GsuI CTGGAG 1 cut(s) 590
HaeII RGCGCY 1 cut(s) 303
HaeIII GGCC 2 cut(s) 17, 27
HapII CCGG 1 cut(s) 5
HhaI GCGC 2 cut(s) 302, 952
Hin1II CATG 5 cut(s) 230, 258, 299, 539, 967
Hin6I GCGC 2 cut(s) 300, 950
HinP1I GCGC 2 cut(s) 300, 950
HincII GTYRAC 1 cut(s) 610
HindII GTYRAC 1 cut(s) 610
HinfI GANTC 4 cut(s) 508, 733, 765, 797
HpaI GTTAAC 1 cut(s) 610
HpaII CCGG 1 cut(s) 5
HphI GGTGA 2 cut(s) 148, 952
Hpy166II GTNNAC 3 cut(s) 260, 610, 796
Hpy188I TCNGA 7 cut(s) 52, 101, 114, 174, 708, 802, 937
Hpy188III TCNNGA 4 cut(s) 246, 290, 485, 569
Hpy8I GTNNAC 3 cut(s) 260, 610, 796
Hpy99I CGWCG 1 cut(s) 46
HpyAV CCTTC 5 cut(s) 51, 127, 320, 550, 709
HpyCH4III ACNGT 1 cut(s) 401
HpyCH4IV ACGT 1 cut(s) 451
HpyCH4V TGCA 4 cut(s) 158, 206, 337, 689
HpyF10VI GCNNNNNNNGC 3 cut(s) 91, 938, 947
HpyF3I CTNAG 2 cut(s) 111, 162
HpySE526I ACGT 1 cut(s) 451
Hsp92II CATG 5 cut(s) 230, 258, 299, 539, 967
HspAI GCGC 2 cut(s) 300, 950
Ksp22I TGATCA 1 cut(s) 532
KspAI GTTAAC 1 cut(s) 610
Kzo9I GATC 2 cut(s) 532, 836
LguI GCTCTTC 2 cut(s) 101, 228
LmnI GCTCC 2 cut(s) 425, 671
Lsp1109I GCAGC 4 cut(s) 72, 153, 170, 733
LweI GCATC 4 cut(s) 193, 480, 793, 838
MaeI CTAG 1 cut(s) 305
MaeII ACGT 1 cut(s) 451
MaeIII GTNAC 3 cut(s) 136, 862, 907
MalI GATC 2 cut(s) 534, 838
MbiI CCGCTC 1 cut(s) 117
MboI GATC 2 cut(s) 532, 836
MboII GAAGA 9 cut(s) 88, 187, 215, 278, 332, 394, 634, 732, 857
MluCI AATT 6 cut(s) 46, 193, 214, 273, 870, 991
MlyI GAGTC 2 cut(s) 774, 791
MmeI TCCRAC 3 cut(s) 297, 536, 754
MnlI CCTC 9 cut(s) 388, 490, 622, 691, 712, 770, 795, 913, 962
MseI TTAA 3 cut(s) 444, 609, 684
MslI CAYNNNNRTG 1 cut(s) 962
MspA1I CMGCKG 1 cut(s) 166
MspI CCGG 1 cut(s) 5
MspR9I CCNGG 3 cut(s) 20, 421, 473
MvaI CCWGG 3 cut(s) 20, 421, 473
MwoI GCNNNNNNNGC 3 cut(s) 91, 938, 947
NdeII GATC 2 cut(s) 532, 836
NlaIII CATG 5 cut(s) 230, 258, 299, 539, 967
NmuCI GTSAC 2 cut(s) 136, 907
PaeR7I CTCGAG 1 cut(s) 290
PasI CCCWGGG 1 cut(s) 19
PciSI GCTCTTC 2 cut(s) 101, 228
PcsI WCGNNNNNNNCGW 1 cut(s) 41
PfeI GAWTC 2 cut(s) 508, 733
PkrI GCNGC 5 cut(s) 26, 87, 160, 168, 748
PleI GAGTC 2 cut(s) 773, 791
PpsI GAGTC 2 cut(s) 773, 791
Ppu21I YACGTR 1 cut(s) 452
Psp6I CCWGG 3 cut(s) 18, 419, 471
PspGI CCWGG 3 cut(s) 18, 419, 471
PspPI GGNCC 1 cut(s) 16
PvuII CAGCTG 1 cut(s) 166
RsaI GTAC 1 cut(s) 31
RsaNI GTAC 1 cut(s) 30
RseI CAYNNNNRTG 1 cut(s) 962
SapI GCTCTTC 2 cut(s) 101, 228
SaqAI TTAA 3 cut(s) 444, 609, 684
SatI GCNGC 5 cut(s) 25, 86, 159, 167, 747
Sau3AI GATC 2 cut(s) 532, 836
Sau96I GGNCC 1 cut(s) 16
SchI GAGTC 2 cut(s) 774, 791
ScrFI CCNGG 3 cut(s) 20, 421, 473
SfaNI GCATC 4 cut(s) 193, 480, 793, 838
SfcI CTRYAG 3 cut(s) 263, 465, 852
Sfr274I CTCGAG 1 cut(s) 290
SlaI CTCGAG 1 cut(s) 290
SmiMI CAYNNNNRTG 1 cut(s) 962
SmlI CTYRAG 2 cut(s) 290, 483
SmoI CTYRAG 2 cut(s) 290, 483
SnaBI TACGTA 1 cut(s) 452
Sse9I AATT 6 cut(s) 46, 193, 214, 273, 870, 991
SsiI CCGC 3 cut(s) 24, 64, 117
SspMI CTAG 1 cut(s) 305
StyD4I CCNGG 3 cut(s) 18, 419, 471
StyI CCWWGG 1 cut(s) 621
TaaI ACNGT 1 cut(s) 401
TaiI ACGT 1 cut(s) 454
TaqI TCGA 4 cut(s) 44, 245, 291, 868
TasI AATT 6 cut(s) 46, 193, 214, 273, 870, 991
TauI GCSGC 1 cut(s) 27
TfiI GAWTC 2 cut(s) 508, 733
Tru1I TTAA 3 cut(s) 444, 609, 684
Tru9I TTAA 3 cut(s) 444, 609, 684
TscAI CASTG 1 cut(s) 798
TseFI GTSAC 2 cut(s) 136, 907
TseI GCWGC 4 cut(s) 85, 158, 166, 746
Tsp45I GTSAC 2 cut(s) 136, 907
TspDTI ATGAA 4 cut(s) 215, 368, 402, 597
TspGWI ACGGA 2 cut(s) 143, 362
TspRI CASTG 1 cut(s) 798
XapI RAATTY 2 cut(s) 46, 214
XhoI CTCGAG 1 cut(s) 290
XspI CTAG 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.