Rmu_sc0009451.1_g000006

OST-HTH/LOTUS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009451.1
OG0000679
Physical Location & Seq
Reverse (-)
27098 .. 38002
10905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009451.1_g000006.1.cds

Sequence Viewer

Length: 3837 bp
atggtccaggcccaggtaaaggcgctggccagattaccactgtaccgccgctgcccagtcaggggggcatccgacccaggcagccacccctacattcatttcctcaatcagaagcagcacggcaccaatgccaagcctaactgcctaagccacagatcgagagaatcgaatcacctctcgatcctgacgccactgctgccgaacaatctagcaccaaagaacaaatctccgcccagggcaggccctaagcctaggcaaacctctgtagatctgttctacatttcattgaggcttcggagctcgaacttgcagatggttccggagcggtccgagtcagatccgagttcggcctgtgacctccgacacgatgcgagtgaagacccaatcgactcggtcgaggccgagacgagtctgatcaatgccgtctacctcgacagcaaggccgagctcgtggctcagtcgaagcgactcggcggccgggcgttagacctagcgaccgcgtcgaagctcctgcatctctgctgcaactttgactctgtagagtgcgcctcggcgcttctcagcggacagctcggagcgataccactcgtgaacgagttagacgaggccgggaaaacgccgctacacacggcggtggagtctcacgcgttgcggtgcgtggaggcgttgctgaagaaacacgctcgtacggacctgaggacgaaggacggtgaggcacagctaccgttggagttgtcgcttactgaggcaaggttggatatatattggaatccgaacgatttctccaaggaagaatttgtccttcacataactgaaaaggatttgagcattgtgagacttttgagtgacaaaaccaaggaaatcgctgaggtggcttattcatacgctgttcaagggagcgtagcttctctgacggctctgctcatcgtcgccgccgagaaggttatcgattccgtgttggagttgcgtaattccaaatcggggtgcaaggagaagttgactatctatgaatgtgtttatacccatgcagccgaggtgattttcataggcaacagaatgccttataagggaggctttggccctgggcggccatacaacgacgccgttgagggcggccaaaaggaagctcttgctccgggagatagacctgcttcagctcttcggagctgtagttcagagcggtggtggagacaagaaggtgacttcgccactcatccgtgcagctcagttaatcaggcctttcccaatcaacataaatgtactgccttagaggtgacagatgaagacaccactgctgaaagcaggcatttgcttgtgcatgtttatatgtttactctgttcataattctcaagtttctactgcctgctaatgctagaaatgttaactcaatcaccaaggcagaagcttgtaagtactttgaatctcatcaaggatgtgtcagaggagttcaggatggagcataccagagtcattcttatgctgcgaaacaactcaaacgcaaaatctttgttggaggacttcctccttcagtggactctgatgttttgggaaagttctttgaagagtttggatcagtggaagatgctgtagttattgtaactcagatagaaaagaagatacaatctcgaggctttggttttgtcacatttagagaggagaaatctgctttagaagccatgcatgcgaactacgttaccatgagaggcaagaaagttgaaataaaaagtttgattccaaaattggttttcagagctgagtttgagaaaatgtcacctcaacaacgagaacaagataaagattttcaacttccactgcagaagtcgaacgagtatattagggaaggtgataaccctgaacaaggttcttgtgctgatagattagtccttggacaaccagcggcatgttccattgaacatcaagctcatgtgagcaagagctctgaggacccaagcactcctacatggctaaaggttttcaagaagtggtttcctgggttcttacaaggtctcctgaagcactcaaagtatgctctctcttctctaaaagctgatttcagggttaaatttgggttagaactggatcattcatctgtgggctactctaagctcagtgacttcctgaaatgtttctccgatttatgtaccgttgagattctctccatatgcaaacgtagaccacctagtcacatgatcatccggccaaatttttttaggcctccacgccgactccttcatacactcagaacacctcatactctgtcattttttgcattgattgagaatggtggtgattcaaagtgtctttcagacctctcaatgggcattggtggtgaatattcaaaatgtcttcaggatcattcaaagtgttttcatgaccattcagttgccgatagtactgattcaaagtgtcttcagaatctttcaattgcagcgggtagtgatacaaattgtcgtcaggaactttcagctgacaatgctgctgattcaaggtgtcttcaggacctttcactggactttggtggtgattcaaagtgtatccaggacctttccatttgcaatgcttgtgaaaggtgtggcttaaatgtcactagctatggggaagagaaatcgtcctttgggtacactaaagtgaagaactcaaggttccttcaattcttgaagccagatcctgtactccatggtccgatttatcaggagaagctacatagagagactaaagggactactattattgcttgggttttagaccaagcacctgctgtaatggctggttttgattccaggatcactaagcatgatgaactaggaagctattatgatattaagaagacatttaatattatgaagtactgcattccaaacaagattatgagacatcctgaagtcatatttaacctaggagagtatgctcgtgataggccggtgagaaagaatgttgatttgtatacctgttttattcttggtgtgcagtctgaggaaccaaccctttatcgacttgacagtgaccttgatcctcctttagagaaatgtgatggtgtagaattaattggcaccggggatctagcggcttatgaagcattgacagaagaaacggaggaacctgtggaaggttttcatgtagaagacacacatagaaaagttaaatatgcatttcttaaggcagctctaaccgatccctctaccggtggtattataactgaaaaagcttccgtcatttataagcaaacagagagaggctccaaaaaaatcggagcgattccgaaacctaaacctaggtttcgtgagcagtgcggcggcgtcccatggctccgatctgcagcagggcgctccggcgtcgttttccagcccaagggggacgagactttgatctcgggttgcgttgtggtcgagcccggttttggttctttcgggctgcgtcgtggtcgacggcatcggtctcctgcctggggaggccgccgaactgatttggcggtggcgggcggcttctcgaaagggccagattcggctgctgggtgtgagaatgttgctgtgggtgtgttgaatgtcgcgacgtacaccaaaagggtcttaggcgtcaagatgttcaggacattgaaaatcaatgaaaatgctgttgaagaagttggtcatcctctgacgcagttacatggaggggaagtttggctagaaacagatgatgaaggggtcattacgttagacactgagattcagatgcagcggatggtatttaaaaccaacacagatgctattaatttcttcaacaaagctatagcagttgatgatgatctgtctttagtcattttgagaaatctacgaaaccctttgtacttcccttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 OST-HTH RRM_1

Protein Analysis

1278

Amino Acids

141.91

Weight (kDa)

7.35

Isoelectric Point (pI)

45.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1065, 3194, 3219
AarI CACCTGC 1 cut(s) 2764
AasI GACNNNNNNGTC 1 cut(s) 2181
Acc36I ACCTGC 2 cut(s) 1156, 2764
AccB1I GGYRCC 2 cut(s) 122, 3050
AccBSI CCGCTC 2 cut(s) 325, 1180
AccI GTMKAC 4 cut(s) 426, 2173, 2945, 3424
AccII CGCG 3 cut(s) 500, 647, 3548
AccIII TCCGGA 1 cut(s) 319
AcoI YGGCCR 5 cut(s) 27, 475, 1088, 1114, 2198
AcsI RAATTY 3 cut(s) 794, 2063, 2203
AcuI CTGAAG 8 cut(s) 692, 1137, 1512, 2033, 2333, 2396, 2480, 2901
AcyI GRCGYC 5 cut(s) 188, 1101, 3297, 3333, 3573
AflII CTTAAG 1 cut(s) 3155
AflIII ACRYGT 1 cut(s) 645
AgeI ACCGGT 1 cut(s) 3182
AjnI CCWGG 9 cut(s) 6, 12, 76, 233, 1081, 1990, 2538, 2780, 3443
AleI CACNNNNGTG 2 cut(s) 632, 2627
AloI GAACNNNNNNTCC 4 cut(s) 767, 799, 1156, 1188
Alw21I GWGCWC 3 cut(s) 302, 450, 1940
Alw26I GTCTC 9 cut(s) 398, 645, 829, 1183, 2012, 2705, 2866, 3353, 3441
AlwNI CAGNNNCTG 1 cut(s) 2669
Ama87I CYCGRG 2 cut(s) 1626, 3370
Aor13HI TCCGGA 1 cut(s) 319
ApoI RAATTY 3 cut(s) 794, 2063, 2203
AseI ATTAAT 2 cut(s) 3044, 3750
AsiGI ACCGGT 1 cut(s) 3182
Asp700I GAANNNNTTC 3 cut(s) 779, 2126, 3111
AspA2I CCTAGG 3 cut(s) 251, 2896, 3272
AspLEI GCGC 4 cut(s) 25, 548, 556, 3327
AsuC2I CCSGG 5 cut(s) 479, 610, 1137, 3055, 3393
AvaI CYCGRG 2 cut(s) 1626, 3370
AvaII GGWCC 7 cut(s) 4, 327, 691, 1945, 2500, 2542, 2681
AvrII CCTAGG 3 cut(s) 251, 2896, 3272
AxyI CCTNAGG 1 cut(s) 695
BaeI ACNNNNGTAYC 2 cut(s) 26, 59
BalI TGGCCA 1 cut(s) 29
BanI GGYRCC 2 cut(s) 122, 3050
BanII GRGCYC 4 cut(s) 302, 450, 1940, 3393
BauI CACGAG 3 cut(s) 449, 587, 2910
BbsI GAAGAC 7 cut(s) 384, 1290, 2339, 2402, 2486, 2834, 3129
Bbv12I GWGCWC 3 cut(s) 302, 450, 1940
BbvCI CCTCAGC 1 cut(s) 867
BccI CCATC 4 cut(s) 307, 1448, 3026, 3715
BceAI ACGGC 6 cut(s) 136, 407, 645, 930, 1088, 3443
BcgI CGANNNNNNTGC 2 cut(s) 493, 527
BciT130I CCWGG 9 cut(s) 8, 14, 78, 235, 1083, 1992, 2540, 2782, 3445
BciVI GTATCC 1 cut(s) 2546
BclI TGATCA 2 cut(s) 414, 2190
BcnI CCSGG 5 cut(s) 479, 610, 1137, 3055, 3393
BcoDI GTCTC 9 cut(s) 398, 645, 829, 1183, 2012, 2705, 2866, 3353, 3441
BfmI CTRYAG 7 cut(s) 264, 537, 1168, 1587, 1814, 3315, 3768
BfoI RGCGCY 3 cut(s) 26, 557, 3328
BfrI CTTAAG 1 cut(s) 3155
BfuAI ACCTGC 2 cut(s) 1156, 2764
BfuI GTATCC 1 cut(s) 2546
BglII AGATCT 1 cut(s) 268
BlnI CCTAGG 3 cut(s) 251, 2896, 3272
BmcAI AGTACT 3 cut(s) 1415, 2395, 2849
Bme18I GGWCC 7 cut(s) 4, 327, 691, 1945, 2500, 2542, 2681
BmeT110I CYCGRG 2 cut(s) 1626, 3370
BmiI GGNNCC 9 cut(s) 124, 318, 1947, 2645, 2979, 3052, 3099, 3238, 3308
BmrI ACTGGG 1 cut(s) 50
BmsI GCATC 7 cut(s) 77, 358, 523, 1573, 3439, 3702, 3733
BmuI ACTGGG 1 cut(s) 50
BpiI GAAGAC 7 cut(s) 384, 1290, 2339, 2402, 2486, 2834, 3129
BplI GAGNNNNNCTC 6 cut(s) 533, 565, 2141, 2173, 3221, 3253
Bpu10I CCTNAGC 3 cut(s) 146, 246, 867
BpuEI CTTGAG 2 cut(s) 1334, 2623
BpuMI CCSGG 5 cut(s) 479, 610, 1137, 3055, 3393
Bsa29I ATCGAT 1 cut(s) 948
BsaBI GATNNNNATC 1 cut(s) 3783
BsaHI GRCGYC 5 cut(s) 188, 1101, 3297, 3333, 3573
BsaI GGTCTC 2 cut(s) 2012, 3441
BsaWI WCCGGW 2 cut(s) 319, 3182
Bse118I RCCGGY 2 cut(s) 2920, 3182
Bse1I ACTGG 3 cut(s) 56, 2082, 2514
Bse21I CCTNAGG 1 cut(s) 695
Bse3DI GCAATG 1 cut(s) 2563
Bse8I GATNNNNATC 1 cut(s) 3783
BseAI TCCGGA 1 cut(s) 319
BseBI CCWGG 9 cut(s) 8, 14, 78, 235, 1083, 1992, 2540, 2782, 3445
BseCI ATCGAT 1 cut(s) 948
BseGI GGATG 8 cut(s) 68, 1213, 1439, 1459, 2193, 2875, 3628, 3726
BseJI GATNNNNATC 1 cut(s) 3783
BseMI GCAATG 1 cut(s) 2563
BseNI ACTGG 3 cut(s) 56, 2082, 2514
BseRI GAGGAG 2 cut(s) 1458, 1670
BseX3I CGGCCG 1 cut(s) 475
BseYI CCCAGC 1 cut(s) 3509
BsgI GTGCAG 2 cut(s) 1240, 2987
Bsh1236I CGCG 3 cut(s) 500, 647, 3548
Bsh1285I CGRYCG 3 cut(s) 396, 478, 498
BshNI GGYRCC 2 cut(s) 122, 3050
BshTI ACCGGT 1 cut(s) 3182
BshVI ATCGAT 1 cut(s) 948
BsiEI CGRYCG 3 cut(s) 396, 478, 498
BsiHKAI GWGCWC 3 cut(s) 302, 450, 1940
BsiHKCI CYCGRG 2 cut(s) 1626, 3370
BsiWI CGTACG 1 cut(s) 686
BslFI GGGAC 3 cut(s) 2734, 3284, 3368
BsmAI GTCTC 9 cut(s) 398, 645, 829, 1183, 2012, 2705, 2866, 3353, 3441
BsmBI CGTCTC 1 cut(s) 398
BsmFI GGGAC 3 cut(s) 2734, 3284, 3368
BsmI GAATGC 2 cut(s) 1062, 2853
Bso31I GGTCTC 2 cut(s) 2012, 3441
BsoBI CYCGRG 2 cut(s) 1626, 3370
Bsp1286I GDGCHC 4 cut(s) 302, 450, 1940, 3393
Bsp13I TCCGGA 1 cut(s) 319
Bsp19I CCATGG 2 cut(s) 2677, 3302
Bsp68I TCGCGA 1 cut(s) 3548
BspDI ATCGAT 1 cut(s) 948
BspEI TCCGGA 1 cut(s) 319
BspFNI CGCG 3 cut(s) 500, 647, 3548
BspHI TCATGA 1 cut(s) 2371
BspLI GGNNCC 9 cut(s) 124, 318, 1947, 2645, 2979, 3052, 3099, 3238, 3308
BspMAI CTGCAG 2 cut(s) 1818, 3319
BspMI ACCTGC 2 cut(s) 1156, 2764
BspQI GCTCTTC 1 cut(s) 1164
BspT107I GGYRCC 2 cut(s) 122, 3050
BspTI CTTAAG 1 cut(s) 3155
BspTNI GGTCTC 2 cut(s) 2012, 3441
BsrBI CCGCTC 2 cut(s) 325, 1180
BsrDI GCAATG 1 cut(s) 2563
BsrFI RCCGGY 2 cut(s) 2920, 3182
BsrI ACTGG 3 cut(s) 56, 2082, 2514
BssAI RCCGGY 2 cut(s) 2920, 3182
BssNAI GTATAC 1 cut(s) 2946
BssNI GRCGYC 5 cut(s) 188, 1101, 3297, 3333, 3573
BssSI CACGAG 3 cut(s) 449, 587, 2910
Bst1107I GTATAC 1 cut(s) 2946
Bst2BI CACGAG 3 cut(s) 449, 587, 2910
Bst2UI CCWGG 9 cut(s) 8, 14, 78, 235, 1083, 1992, 2540, 2782, 3445
Bst4CI ACNGT 5 cut(s) 42, 710, 726, 2146, 3002
Bst6I CTCTTC 4 cut(s) 1164, 1557, 2041, 2595
BstACI GRCGYC 5 cut(s) 188, 1101, 3297, 3333, 3573
BstAFI CTTAAG 1 cut(s) 3155
BstC8I GCNNGC 6 cut(s) 27, 241, 1304, 1365, 1683, 3478
BstDSI CCRYGG 2 cut(s) 2677, 3302
BstENI CCTNNNNNAGG 2 cut(s) 1857, 3105
BstF5I GGATG 8 cut(s) 68, 1213, 1439, 1459, 2193, 2875, 3628, 3726
BstFNI CGCG 3 cut(s) 500, 647, 3548
BstH2I RGCGCY 3 cut(s) 26, 557, 3328
BstHHI GCGC 4 cut(s) 25, 548, 556, 3327
BstMAI GTCTC 9 cut(s) 398, 645, 829, 1183, 2012, 2705, 2866, 3353, 3441
BstMCI CGRYCG 3 cut(s) 396, 478, 498
BstMWI GCNNNNNNNGC 7 cut(s) 196, 872, 1673, 1682, 2474, 2765, 3074
BstNI CCWGG 9 cut(s) 8, 14, 78, 235, 1083, 1992, 2540, 2782, 3445
BstNSI RCATGY 3 cut(s) 1322, 1685, 1905
BstSFI CTRYAG 7 cut(s) 264, 537, 1168, 1587, 1814, 3315, 3768
BstUI CGCG 3 cut(s) 500, 647, 3548
BstV2I GAAGAC 7 cut(s) 384, 1290, 2339, 2402, 2486, 2834, 3129
BstX2I RGATCY 4 cut(s) 268, 337, 2665, 3058
BstYI RGATCY 4 cut(s) 268, 337, 2665, 3058
BstZ17I GTATAC 1 cut(s) 2946
BstZI CGGCCG 1 cut(s) 475
Bsu15I ATCGAT 1 cut(s) 948
Bsu36I CCTNAGG 1 cut(s) 695
BsuI GTATCC 1 cut(s) 2546
BsuTUI ATCGAT 1 cut(s) 948
BtgI CCRYGG 2 cut(s) 2677, 3302
BtsCI GGATG 8 cut(s) 68, 1213, 1439, 1459, 2193, 2875, 3628, 3726
BtsI GCAGTG 4 cut(s) 191, 1290, 1811, 3293
BtuMI TCGCGA 1 cut(s) 3548
BveI ACCTGC 2 cut(s) 1156, 2764
Cac8I GCNNGC 6 cut(s) 27, 241, 1304, 1365, 1683, 3478
CaiI CAGNNNCTG 1 cut(s) 2669
CciI TCATGA 1 cut(s) 2371
CfoI GCGC 4 cut(s) 25, 548, 556, 3327
Cfr10I RCCGGY 2 cut(s) 2920, 3182
ClaI ATCGAT 1 cut(s) 948
CpoI CGGWCCG 1 cut(s) 327
CseI GACGC 8 cut(s) 196, 489, 1109, 3286, 3322, 3404, 3562, 3646
CspAI ACCGGT 1 cut(s) 3182
CspI CGGWCCG 1 cut(s) 327
DraI TTTAAA 1 cut(s) 3730
DrdI GACNNNNNNGTC 1 cut(s) 2181
DseDI GACNNNNNNGTC 1 cut(s) 2181
EaeI YGGCCR 5 cut(s) 27, 475, 1088, 1114, 2198
EagI CGGCCG 1 cut(s) 475
Eam1104I CTCTTC 4 cut(s) 1164, 1557, 2041, 2595
EarI CTCTTC 4 cut(s) 1164, 1557, 2041, 2595
EciI GGCGGA 1 cut(s) 219
Ecl136II GAGCTC 3 cut(s) 300, 448, 1938
EclXI CGGCCG 1 cut(s) 475
Eco147I AGGCCT 2 cut(s) 1238, 2215
Eco24I GRGCYC 4 cut(s) 302, 450, 1940, 3393
Eco31I GGTCTC 2 cut(s) 2012, 3441
Eco47I GGWCC 7 cut(s) 4, 327, 691, 1945, 2500, 2542, 2681
Eco52I CGGCCG 1 cut(s) 475
Eco53kI GAGCTC 3 cut(s) 300, 448, 1938
Eco57I CTGAAG 8 cut(s) 692, 1137, 1512, 2033, 2333, 2396, 2480, 2901
Eco81I CCTNAGG 1 cut(s) 695
Eco88I CYCGRG 2 cut(s) 1626, 3370
EcoICRI GAGCTC 3 cut(s) 300, 448, 1938
EcoNI CCTNNNNNAGG 2 cut(s) 1857, 3105
EcoO109I RGGNCCY 4 cut(s) 242, 1945, 2500, 2542
EcoRII CCWGG 9 cut(s) 6, 12, 76, 233, 1081, 1990, 2538, 2780, 3443
EcoT22I ATGCAT 2 cut(s) 1683, 3151
EcoT38I GRGCYC 4 cut(s) 302, 450, 1940, 3393
Esp3I CGTCTC 1 cut(s) 398
FalI AAGNNNNNCTT 2 cut(s) 1058, 1090
FaqI GGGAC 3 cut(s) 2734, 3284, 3368
FauI CCCGC 2 cut(s) 2425, 3469
FauNDI CATATG 1 cut(s) 2162
FbaI TGATCA 2 cut(s) 414, 2190
FblI GTMKAC 4 cut(s) 426, 2173, 2945, 3424
FokI GGATG 8 cut(s) 55, 1200, 1446, 1466, 2180, 2862, 3615, 3733
FriOI GRGCYC 4 cut(s) 302, 450, 1940, 3393
GlaI GCGC 4 cut(s) 24, 547, 555, 3326
GsaI CCCAGC 1 cut(s) 3513
HaeII RGCGCY 3 cut(s) 26, 557, 3328
HgaI GACGC 8 cut(s) 196, 489, 1109, 3286, 3322, 3404, 3562, 3646
HhaI GCGC 4 cut(s) 25, 548, 556, 3327
Hin1I GRCGYC 5 cut(s) 188, 1101, 3297, 3333, 3573
Hin6I GCGC 4 cut(s) 23, 546, 554, 3325
HinP1I GCGC 4 cut(s) 23, 546, 554, 3325
HincII GTYRAC 3 cut(s) 999, 1384, 3425
HindII GTYRAC 3 cut(s) 999, 1384, 3425
HindIII AAGCTT 2 cut(s) 1404, 3204
HpaI GTTAAC 1 cut(s) 1384
Hpy99I CGWCG 7 cut(s) 505, 932, 1103, 3338, 3420, 3429, 3553
HpyCH4III ACNGT 5 cut(s) 42, 710, 726, 2146, 3002
HpyCH4IV ACGT 4 cut(s) 1692, 2170, 3551, 3692
HpyF10VI GCNNNNNNNGC 7 cut(s) 196, 872, 1673, 1682, 2474, 2765, 3074
HpySE526I ACGT 4 cut(s) 1692, 2170, 3551, 3692
Hsp92I GRCGYC 5 cut(s) 188, 1101, 3297, 3333, 3573
HspAI GCGC 4 cut(s) 23, 546, 554, 3325
Kpn2I TCCGGA 1 cut(s) 319
Ksp22I TGATCA 2 cut(s) 414, 2190
KspAI GTTAAC 1 cut(s) 1384
LguI GCTCTTC 1 cut(s) 1164
LweI GCATC 7 cut(s) 77, 358, 523, 1573, 3439, 3702, 3733
MaeII ACGT 4 cut(s) 1692, 2170, 3551, 3692
MbiI CCGCTC 2 cut(s) 325, 1180
MfeI CAATTG 1 cut(s) 2424
MflI RGATCY 4 cut(s) 268, 337, 2665, 3058
MhlI GDGCHC 4 cut(s) 302, 450, 1940, 3393
MlsI TGGCCA 1 cut(s) 29
MluI ACGCGT 1 cut(s) 645
MluNI TGGCCA 1 cut(s) 29
MlyI GAGTC 9 cut(s) 341, 383, 418, 462, 527, 647, 1477, 1529, 2220
MmeI TCCRAC 6 cut(s) 96, 385, 708, 735, 939, 1492
Mox20I TGGCCA 1 cut(s) 29
Mph1103I ATGCAT 2 cut(s) 1683, 3151
MroI TCCGGA 1 cut(s) 319
MroXI GAANNNNTTC 3 cut(s) 779, 2126, 3111
MscI TGGCCA 1 cut(s) 29
MslI CAYNNNNRTG 3 cut(s) 632, 1476, 2627
Msp20I TGGCCA 1 cut(s) 29
MspA1I CMGCKG 6 cut(s) 51, 564, 1898, 2432, 2468, 3718
MspCI CTTAAG 1 cut(s) 3155
MunI CAATTG 1 cut(s) 2424
Mva1269I GAATGC 2 cut(s) 1062, 2853
MvaI CCWGG 9 cut(s) 8, 14, 78, 235, 1083, 1992, 2540, 2782, 3445
MvnI CGCG 3 cut(s) 500, 647, 3548
MwoI GCNNNNNNNGC 7 cut(s) 196, 872, 1673, 1682, 2474, 2765, 3074
NciI CCSGG 5 cut(s) 479, 610, 1137, 3055, 3393
NcoI CCATGG 2 cut(s) 2677, 3302
NdeI CATATG 1 cut(s) 2162
NlaIV GGNNCC 9 cut(s) 124, 318, 1947, 2645, 2979, 3052, 3099, 3238, 3308
NmeAIII GCCGAG 6 cut(s) 427, 450, 469, 530, 961, 1057
NruI TCGCGA 1 cut(s) 3548
NsiI ATGCAT 2 cut(s) 1683, 3151
NspI RCATGY 3 cut(s) 1322, 1685, 1905
OliI CACNNNNGTG 2 cut(s) 632, 2627
PaeI GCATGC 1 cut(s) 1685
PaeR7I CTCGAG 1 cut(s) 1626
PagI TCATGA 1 cut(s) 2371
PaqCI CACCTGC 1 cut(s) 2764
PasI CCCWGGG 2 cut(s) 234, 1082
PceI AGGCCT 2 cut(s) 1238, 2215
PciSI GCTCTTC 1 cut(s) 1164
PcsI WCGNNNNNNNCGW 4 cut(s) 164, 393, 600, 933
PctI GAATGC 2 cut(s) 1062, 2853
PdmI GAANNNNTTC 3 cut(s) 779, 2126, 3111
Pfl23II CGTACG 1 cut(s) 686
PflFI GACNNNGTC 2 cut(s) 392, 499
PfoI TCCNGGA 3 cut(s) 1135, 2538, 2780
PinAI ACCGGT 1 cut(s) 3182
PleI GAGTC 9 cut(s) 340, 383, 417, 462, 527, 646, 1476, 1529, 2220
PpsI GAGTC 9 cut(s) 340, 383, 417, 462, 527, 646, 1476, 1529, 2220
PpuMI RGGWCCY 3 cut(s) 1945, 2500, 2542
PshBI ATTAAT 2 cut(s) 3044, 3750
PsiI TTATAA 3 cut(s) 1065, 3194, 3219
Psp124BI GAGCTC 3 cut(s) 302, 450, 1940
Psp5II RGGWCCY 3 cut(s) 1945, 2500, 2542
Psp6I CCWGG 9 cut(s) 6, 12, 76, 233, 1081, 1990, 2538, 2780, 3443
PspFI CCCAGC 1 cut(s) 3509
PspGI CCWGG 9 cut(s) 6, 12, 76, 233, 1081, 1990, 2538, 2780, 3443
PspLI CGTACG 1 cut(s) 686
PspN4I GGNNCC 9 cut(s) 124, 318, 1947, 2645, 2979, 3052, 3099, 3238, 3308
PspPPI RGGWCCY 3 cut(s) 1945, 2500, 2542
PsrI GAACNNNNNNTAC 2 cut(s) 2236, 2268
PstI CTGCAG 2 cut(s) 1818, 3319
PstNI CAGNNNCTG 1 cut(s) 2669
PsuI RGATCY 4 cut(s) 268, 337, 2665, 3058
PsyI GACNNNGTC 2 cut(s) 392, 499
PvuII CAGCTG 1 cut(s) 2468
RruI TCGCGA 1 cut(s) 3548
RseI CAYNNNNRTG 3 cut(s) 632, 1476, 2627
Rsr2I CGGWCCG 1 cut(s) 327
RsrII CGGWCCG 1 cut(s) 327
SacI GAGCTC 3 cut(s) 302, 450, 1940
SalI GTCGAC 1 cut(s) 3423
SapI GCTCTTC 1 cut(s) 1164
ScaI AGTACT 3 cut(s) 1415, 2395, 2849
SchI GAGTC 9 cut(s) 341, 383, 418, 462, 527, 647, 1477, 1529, 2220
SduI GDGCHC 4 cut(s) 302, 450, 1940, 3393
SfaNI GCATC 7 cut(s) 77, 358, 523, 1573, 3439, 3702, 3733
SfcI CTRYAG 7 cut(s) 264, 537, 1168, 1587, 1814, 3315, 3768
Sfr274I CTCGAG 1 cut(s) 1626
SinI GGWCC 7 cut(s) 4, 327, 691, 1945, 2500, 2542, 2681
SlaI CTCGAG 1 cut(s) 1626
SmiMI CAYNNNNRTG 3 cut(s) 632, 1476, 2627
SmlI CTYRAG 4 cut(s) 1349, 1626, 2638, 3155
SmoI CTYRAG 4 cut(s) 1349, 1626, 2638, 3155
SphI GCATGC 1 cut(s) 1685
SseBI AGGCCT 2 cut(s) 1238, 2215
SspI AATATT 2 cut(s) 2336, 2839
SstI GAGCTC 3 cut(s) 302, 450, 1940
StuI AGGCCT 2 cut(s) 1238, 2215
TaaI ACNGT 5 cut(s) 42, 710, 726, 2146, 3002
TaiI ACGT 4 cut(s) 1695, 2173, 3554, 3695
TaqII GACCGA 2 cut(s) 382, 3423
TatI WGTACW 6 cut(s) 1259, 1413, 2393, 2671, 2847, 3825
TspGWI ACGGA 5 cut(s) 704, 943, 1206, 3107, 3199
Tth111I GACNNNGTC 2 cut(s) 392, 499
Vha464I CTTAAG 1 cut(s) 3155
VpaK11BI GGWCC 7 cut(s) 4, 327, 691, 1945, 2500, 2542, 2681
VspI ATTAAT 2 cut(s) 3044, 3750
XagI CCTNNNNNAGG 2 cut(s) 1857, 3105
XapI RAATTY 3 cut(s) 794, 2063, 2203
XceI RCATGY 3 cut(s) 1322, 1685, 1905
XhoI CTCGAG 1 cut(s) 1626
XmaJI CCTAGG 3 cut(s) 251, 2896, 3272
XmiI GTMKAC 4 cut(s) 426, 2173, 2945, 3424
XmnI GAANNNNTTC 3 cut(s) 779, 2126, 3111
ZrmI AGTACT 3 cut(s) 1415, 2395, 2849
Zsp2I ATGCAT 2 cut(s) 1683, 3151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.