Rh2BG621000

OST-HTH/LOTUS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000679
Physical Location & Seq
Forward (+)
84363841 .. 84364581
741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG621000.1

Sequence Viewer

Length: 411 bp
ATGAAAAACTTCTCCTCGAACTCAATTGTTAGGCAAAGAGCTATAGACCTGGCAACCTCTCAAGAGATGCGTTACATATTGCTGAATCCAACCACTATTAGCCTTATTGATCATGCCTTCCCCAATCAACTTGAATGTATGCCTCTGGAGTTGGCAGATGAAGACACCACTACCAAAAGAAATGTTAACTCAAACACCAAGGCAGAGGTTTGTAAGTTCTTCAACTCTCATCAAGGATGTGTCAGGGGAGCAAAGTGCTTTAATGCACATTGTGAGGAGTGTCAGAAAGTGAAGGAGGAAGAAGACTGGAATCATTCTTCTGCTGCTAAACTAAAACGCAAAGTCTTTGTTGGAGGACTTCCTCTTTCAGTGGACTCTGATAATGCACCTATGAAAATTTTGTCAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 OST-HTH RRM_1

Protein Analysis

136

Amino Acids

15.3

Weight (kDa)

7.62

Isoelectric Point (pI)

40.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 396
AdeI CACNNNGTG 1 cut(s) 272
AgsI TTSAA 2 cut(s) 134, 223
AjnI CCWGG 1 cut(s) 48
AluBI AGCT 1 cut(s) 41
AluI AGCT 1 cut(s) 41
ApeKI GCWGC 1 cut(s) 323
ApoI RAATTY 1 cut(s) 396
Asp700I GAANNNNTTC 1 cut(s) 8
BbsI GAAGAC 2 cut(s) 168, 309
BbvI GCAGC 1 cut(s) 310
BciT130I CCWGG 1 cut(s) 50
BclI TGATCA 1 cut(s) 109
BfmI CTRYAG 1 cut(s) 42
BisI GCNGC 1 cut(s) 324
BlsI GCNGC 1 cut(s) 325
Bme1390I CCNGG 1 cut(s) 50
BmrFI CCNGG 1 cut(s) 50
BmsI GCATC 1 cut(s) 57
BpiI GAAGAC 2 cut(s) 168, 309
BpmI CTGGAG 1 cut(s) 167
BpuEI CTTGAG 1 cut(s) 45
BsaJI CCNNGG 1 cut(s) 198
Bse1I ACTGG 1 cut(s) 311
BseBI CCWGG 1 cut(s) 50
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 1 cut(s) 242
BseNI ACTGG 1 cut(s) 311
BseRI GAGGAG 2 cut(s) 4, 290
BseXI GCAGC 1 cut(s) 310
Bsp143I GATC 1 cut(s) 109
BsrI ACTGG 1 cut(s) 311
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 1 cut(s) 109
BssT1I CCWWGG 1 cut(s) 198
Bst2UI CCWGG 1 cut(s) 50
BstF5I GGATG 1 cut(s) 242
BstKTI GATC 1 cut(s) 112
BstMBI GATC 1 cut(s) 109
BstNI CCWGG 1 cut(s) 50
BstSCI CCNGG 1 cut(s) 48
BstSFI CTRYAG 1 cut(s) 42
BstV1I GCAGC 1 cut(s) 310
BstV2I GAAGAC 2 cut(s) 168, 309
BtsCI GGATG 1 cut(s) 242
BtsIMutI CAGTG 1 cut(s) 375
CviAII CATG 1 cut(s) 113
CviJI RGCY 2 cut(s) 41, 102
CviKI_1 RGCY 2 cut(s) 41, 102
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
DraIII CACNNNGTG 1 cut(s) 272
Eco130I CCWWGG 1 cut(s) 198
EcoRII CCWGG 1 cut(s) 48
EcoT14I CCWWGG 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 1 cut(s) 116
FaiI YATR 5 cut(s) 44, 77, 114, 140, 392
FatI CATG 1 cut(s) 112
FbaI TGATCA 1 cut(s) 109
Fnu4HI GCNGC 1 cut(s) 324
FokI GGATG 1 cut(s) 249
Fsp4HI GCNGC 1 cut(s) 324
GluI GCNGC 1 cut(s) 324
GsuI CTGGAG 1 cut(s) 167
Hin1II CATG 1 cut(s) 116
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HinfI GANTC 3 cut(s) 85, 310, 374
HpaI GTTAAC 1 cut(s) 187
Hpy166II GTNNAC 2 cut(s) 187, 373
Hpy188I TCNGA 2 cut(s) 285, 379
Hpy188III TCNNGA 2 cut(s) 62, 146
Hpy8I GTNNAC 2 cut(s) 187, 373
HpyAV CCTTC 2 cut(s) 127, 286
HpyCH4V TGCA 2 cut(s) 266, 386
Hsp92II CATG 1 cut(s) 116
Ksp22I TGATCA 1 cut(s) 109
KspAI GTTAAC 1 cut(s) 187
Kzo9I GATC 1 cut(s) 109
LmnI GCTCC 1 cut(s) 248
LpnPI CCDG 5 cut(s) 35, 62, 131, 229, 292
Lsp1109I GCAGC 1 cut(s) 310
LweI GCATC 1 cut(s) 57
MaeIII GTNAC 1 cut(s) 71
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 5 cut(s) 173, 211, 309, 311, 314
MfeI CAATTG 1 cut(s) 24
MluCI AATT 2 cut(s) 24, 396
MlyI GAGTC 1 cut(s) 368
MmeI TCCRAC 2 cut(s) 113, 331
MnlI CCTC 8 cut(s) 25, 67, 153, 199, 268, 289, 347, 372
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 2 cut(s) 186, 261
MspR9I CCNGG 1 cut(s) 50
MunI CAATTG 1 cut(s) 24
MvaI CCWGG 1 cut(s) 50
NdeII GATC 1 cut(s) 109
NlaIII CATG 1 cut(s) 116
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 2 cut(s) 85, 310
PkrI GCNGC 1 cut(s) 325
PleI GAGTC 1 cut(s) 368
PpsI GAGTC 1 cut(s) 368
Psp6I CCWGG 1 cut(s) 48
PspGI CCWGG 1 cut(s) 48
SaqAI TTAA 2 cut(s) 186, 261
SatI GCNGC 1 cut(s) 324
Sau3AI GATC 1 cut(s) 109
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 1 cut(s) 50
SetI ASST 5 cut(s) 43, 51, 59, 210, 391
SfaNI GCATC 1 cut(s) 57
SfcI CTRYAG 1 cut(s) 42
SmlI CTYRAG 1 cut(s) 60
SmoI CTYRAG 1 cut(s) 60
Sse9I AATT 2 cut(s) 24, 396
StyD4I CCNGG 1 cut(s) 48
StyI CCWWGG 1 cut(s) 198
TaqI TCGA 1 cut(s) 17
TasI AATT 2 cut(s) 24, 396
TfiI GAWTC 2 cut(s) 85, 310
Tru1I TTAA 2 cut(s) 186, 261
Tru9I TTAA 2 cut(s) 186, 261
TscAI CASTG 1 cut(s) 375
TseI GCWGC 1 cut(s) 323
TspDTI ATGAA 3 cut(s) 17, 174, 407
TspRI CASTG 1 cut(s) 375
XapI RAATTY 1 cut(s) 396
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.