Rh6DG028400

OST-HTH/LOTUS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000679
Physical Location & Seq
Forward (+)
2562887 .. 2568002
5116 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG028400.1

Sequence Viewer

Length: 2868 bp
ATGGTTCCGGAGCGGTCCGAGTCATCAGGTCCGAGTTCCGCCTGTGACCTCCGAAACGAGGCGAGTGAAGACCCAGTAGACTCGGTCGAGGCCGAGACGAGTCTGTTCAATGCCGTGTACCTCGACAGCAAGGCCGAGCTCGTGGCTCAGTCGAAGCGAGTCGGCGGCGGGGCGTTGGACCCAGCGACCGCGTCGAAGCTCCTGCATCTCTGCTGCAAATTCGACTCGGTGGAGTGCGCCTCGGCGCTTCTTGGCGGACAACTCGGAGCGATACCACACGTGAACGAGTTCGACGAGGCCGGGAAAACGCCGCTACACACGGCGGTGGAGTCTCACGCGTCGCGGTGCGTGGAGGCGTTGCTGAAGAAACACGCTCGTACGGACCTGAGGACGAAGGACGGTCAGGCACAGCTACCGTTGGAGTCGTCGCTTAGTGAGGCAAGGTTGGATATATCTTGGAATCCAAACGATTTCTCCAAGGAAGAATTTGTCATTCACATAACTGAAAAGGATTTGAGCACTGTGAGACTTTTGAGTGACAAAACCAAGGAGATCGCTGAGGTGGCTTATTCATACGCTGTTCAAGGGCGCGCAGCTTCTCTGACGGCTCTGCTCATCGTCGCCGCCGAGAAGGTTATCGATTCCGTGTTGGAGTTGCGTAATTCCAAATCAGGGTGCAAGGAGAAGTTGACTATCTACGAATGCCTTATAATGGAGGCTTTGGCCCTGGGCGGCGGTACAACGACGCCGTTGAGGGCGGCCAAAAGGAAGCTCTTGCTCCGCGAGATAGACCTGCTTCAGCTCTTCGGAGCTGTAGTTCAGAGCGGTGGTGGAGACAAGAAGGTGACTTCGCCACTCATCCGTGCGGCTCAGAGAGGAGACAAAGCTGTTATCCAGCTGCTTCTGAAGACAAATATAGATGTCAATGATGCTGATGCAGATGGAAATTCTGCTCTTCATTGGATACTTGGGTTATCGATATTGTCGCGTCCACCACAGATAAGTATTATATTGCTTCTTCTAGAGCATGGTGCTCTCGTAAGGCAAAGGAATAAAATGGGGTTGACAGCATTTCATATTGCTGCCGGTAATGGTAATTCAGAGGCCCTTGAGATCCTTCTGTTGGAAGACCCGTTAGCTGTCCAGTATATGACGGAAATGAAAGAAACCCCTCTCTTTTTCGCTGTGAAGAATGAGAGTAAAGACTGTACTGAGCTTCTTTTGACATGGGGAGCAAATAGTGAAGTCCTTAATGTGCGTGGGCAAAAAGCAATAGACCTGGCAACCTCTCAAGATATGCGTGACATATTGCTGAACCCAACCACTGTTAGCCTCGTTAATCAGGCCTTCCCCAATCAACATAAATGTACTGCTATAGAGGTGACAGATGAAGACACCACTACTGAAAGAAATGTTAACTCAACCACCAAGGCAGAGGCTTGCAAGTACTTTGACTCTCATCAAGGATATGTCAGAGGAGTTAAGGAGGGAACATACCAGAGTCATTCTTGTGCTGCTAAACAACTCAAACGCAAAATCTTTGTTGGAGGACTTCCTCCTTCAGTGGACTCTGATGTTTTGGGAAAGTTCTTTGAAGAGTTTGGATCAGTGGAAGATGCTATAGTTATTGTAACTCAGATAGAAAAGAAGATACAATCTCGAGGCTTTGGTTTTGTCACATTTAGAGAGGAGAAATCTGCTTTAGAAGCCATGCAAGCGAACTACATCACCATGAGAGGCAAGAAAGTTGAAATAAAAAGTTTGATTCCAAAATTGGTTTTGGGAGCTGAGTTTGAGAAAATGTCACCTCAACAACGAGAACAAGAGAAGAATTTTCAATATCAGCTTCCACTGCAGAAGTCGAACGAGTATATTATTGAAGGTGATAACCCTGAACAAGGTTCTTGCGCTGATAGATTAGTCCTTGGACAACCAGCGGCATGTTCCATTGAACCTCAAGCTCATGTTACCAAGAGCTCTGAGGACCCAAGCACTCCTACATGGCTAAAGGTTTTCAAGAAGTGGTTTCCTGGTTTCTTACAAGGTCTGCTGAAGCACTCAAAGTATGCTCTCTCTTCTCTAAAAGCTGATTTCAGGGCTAAATTTGGGTTAGAACTGGATCATTCATCTGTGGGCTACTTCAAGCTCAGTGACTTCCTGAAATGTTTCTCCAATTTATGTACCGTTGAGATTCTCTCTATATGCAAACGTGGACCACCCAGTCACATGATCGTCCGGCCAAAGTTTTTTAGGCCTCAACGCCGACTCCTTCATACACTCAGAACACCTCATACTCTGTCATTTTTTGCATTGATTGAGAATGGTGGTGATTCAAAGTGTCTTTCAGACCTCTCAATGGGCGTTGGTGGTGATTCAAAATGTCTTCAGGATAATTCAAAGTGTTTTCATGACCATTCAGTTGCCGATAGTAGGGATTCAAAGTGTCTTCAGAATCTTTCAATTGAAGCCGGTAGTGATACAAATTGTCGTCAGGAACTTTCAGCTGACAATGCTGCTGATTCAAAGTGTTTTCAGGACCTTTCACTTGACTTTGATGGTGATTCAAAGTGTTTCCAGGACCTTTCCATTTGCAATGCTGGTGAAAGGTGTGGCTTAAATGTCACTAGCTATGGGGAAGAGAAATCGTCCTTTGGGTATCCTAAAGTGAAGAACTCAAGGTTCCTTCAATTCTTGAAGCCAGATCCTGTACTCCATGGTTCGATTTATCAGGAGAAGCTACATAGAGAGACTAAAGGGACCACTATTATTGCTTGGGTTTTAAACCAAGCACCTGCTGTAATGGCTGGTTTTGATTCCAGGATCACTAAGCATAATGAACTAGTTTCAGATACATCGGAAAAATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 OST-HTH RRM_1

Protein Analysis

955

Amino Acids

105.05

Weight (kDa)

6.09

Isoelectric Point (pI)

43.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 63 - 128 8.7e-08 Ankyrin repeats (3 copies)
Ank_2 PF12796 334 - 413 4e-10 Ankyrin repeats (3 copies)
RRM_1 PF00076 513 - 583 6.3e-14 RNA recognition motif
OST-HTH PF12872 675 - 730 1.9e-06 OST-HTH/LOTUS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 710
AarI CACCTGC 1 cut(s) 2800
AasI GACNNNNNNGTC 1 cut(s) 2220
Acc36I ACCTGC 2 cut(s) 801, 2800
AccBSI CCGCTC 2 cut(s) 13, 825
AccI GTMKAC 1 cut(s) 78
AccII CGCG 6 cut(s) 191, 338, 343, 591, 783, 988
AccIII TCCGGA 1 cut(s) 7
AclWI GGATC 5 cut(s) 1108, 1612, 2127, 2696, 2828
AcoI YGGCCR 2 cut(s) 759, 2237
AcsI RAATTY 6 cut(s) 218, 485, 946, 1831, 2102, 2861
AcuI CTGAAG 7 cut(s) 383, 782, 926, 1545, 2072, 2369, 2432
AcvI CACGTG 1 cut(s) 280
AcyI GRCGYC 1 cut(s) 746
AfaI GTAC 8 cut(s) 119, 379, 739, 1210, 1369, 1448, 2182, 2709
AfiI CCNNNNNNNGG 7 cut(s) 58, 672, 712, 1123, 1898, 2356, 2430
AflIII ACRYGT 2 cut(s) 277, 336
AhlI ACTAGT 1 cut(s) 2839
AjnI CCWGG 5 cut(s) 726, 1278, 2029, 2574, 2816
AleI CACNNNNGTG 1 cut(s) 323
AloI GAACNNNNNNTCC 2 cut(s) 801, 833
Alw21I GWGCWC 4 cut(s) 141, 521, 1036, 1979
Alw26I GTCTC 6 cut(s) 89, 336, 520, 828, 873, 2741
AlwI GGATC 5 cut(s) 1108, 1612, 2127, 2696, 2828
AlwNI CAGNNNCTG 1 cut(s) 2705
Ama87I CYCGRG 1 cut(s) 1659
Aor13HI TCCGGA 1 cut(s) 7
AoxI GGCC 9 cut(s) 90, 132, 297, 723, 759, 1104, 1344, 2237, 2252
ApeKI GCWGC 6 cut(s) 213, 593, 898, 1082, 1514, 2513
ApoI RAATTY 6 cut(s) 218, 485, 946, 1831, 2102, 2861
Asp700I GAANNNNTTC 2 cut(s) 287, 2165
AspLEI GCGC 5 cut(s) 239, 247, 591, 593, 1910
AsuC2I CCSGG 1 cut(s) 301
AsuHPI GGTGA 9 cut(s) 856, 1393, 1720, 1797, 1895, 2339, 2381, 2570, 2612
AvaI CYCGRG 1 cut(s) 1659
AvaII GGWCC 9 cut(s) 15, 29, 178, 382, 1984, 2213, 2536, 2578, 2757
AxyI CCTNAGG 1 cut(s) 386
BaeI ACNNNNGTAYC 2 cut(s) 956, 989
BanII GRGCYC 2 cut(s) 141, 1979
BauI CACGAG 1 cut(s) 140
BbrPI CACGTG 1 cut(s) 280
BbsI GAAGAC 6 cut(s) 75, 914, 1134, 1398, 2375, 2438
Bbv12I GWGCWC 4 cut(s) 141, 521, 1036, 1979
BbvCI CCTCAGC 1 cut(s) 558
BbvI GCAGC 6 cut(s) 200, 605, 885, 1069, 1501, 2500
BccI CCATC 2 cut(s) 935, 2549
BceAI ACGGC 4 cut(s) 98, 336, 621, 733
BcgI CGANNNNNNTGC 2 cut(s) 184, 218
BciT130I CCWGG 5 cut(s) 728, 1280, 2031, 2576, 2818
BciVI GTATCC 2 cut(s) 957, 2667
BcnI CCSGG 1 cut(s) 301
BcoDI GTCTC 6 cut(s) 89, 336, 520, 828, 873, 2741
BcuI ACTAGT 1 cut(s) 2839
BfaI CTAG 3 cut(s) 1022, 2625, 2840
BfmI CTRYAG 4 cut(s) 813, 1374, 1620, 1853
BfoI RGCGCY 1 cut(s) 248
BfuAI ACCTGC 2 cut(s) 801, 2800
BfuI GTATCC 2 cut(s) 957, 2667
BmcAI AGTACT 1 cut(s) 1448
Bme1390I CCNGG 6 cut(s) 301, 728, 1280, 2031, 2576, 2818
Bme18I GGWCC 9 cut(s) 15, 29, 178, 382, 1984, 2213, 2536, 2578, 2757
BmeT110I CYCGRG 1 cut(s) 1659
BmiI GGNNCC 5 cut(s) 6, 180, 1986, 2681, 2758
BmrFI CCNGG 6 cut(s) 301, 728, 1280, 2031, 2576, 2818
BmrI ACTGGG 2 cut(s) 68, 2214
BmsI GCATC 4 cut(s) 214, 919, 925, 1606
BmuI ACTGGG 2 cut(s) 68, 2214
BpiI GAAGAC 6 cut(s) 75, 914, 1134, 1398, 2375, 2438
BplI GAGNNNNNCTC 4 cut(s) 224, 256, 2180, 2212
Bpu10I CCTNAGC 1 cut(s) 558
BpuEI CTTGAG 4 cut(s) 1130, 1275, 1941, 2659
BpuMI CCSGG 1 cut(s) 301
Bsa29I ATCGAT 2 cut(s) 639, 977
BsaAI YACGTR 1 cut(s) 280
BsaHI GRCGYC 1 cut(s) 746
BsaJI CCNNGG 8 cut(s) 240, 477, 546, 726, 727, 1428, 1924, 2713
BsaWI WCCGGW 1 cut(s) 7
BsaXI ACNNNNNCTCC 6 cut(s) 458, 488, 801, 831, 2250, 2280
Bsc4I CCNNNNNNNGG 7 cut(s) 58, 672, 712, 1123, 1898, 2356, 2430
Bse118I RCCGGY 2 cut(s) 1085, 2468
Bse1I ACTGG 4 cut(s) 74, 1144, 2121, 2220
Bse21I CCTNAGG 1 cut(s) 386
Bse3DI GCAATG 1 cut(s) 2599
BseAI TCCGGA 1 cut(s) 7
BseBI CCWGG 5 cut(s) 728, 1280, 2031, 2576, 2818
BseCI ATCGAT 2 cut(s) 639, 977
BseDI CCNNGG 8 cut(s) 240, 477, 546, 726, 727, 1428, 1924, 2713
BseGI GGATG 1 cut(s) 858
BseLI CCNNNNNNNGG 7 cut(s) 58, 672, 712, 1123, 1898, 2356, 2430
BseMI GCAATG 1 cut(s) 2599
BseNI ACTGG 4 cut(s) 74, 1144, 2121, 2220
BsePI GCGCGC 1 cut(s) 589
BseRI GAGGAG 3 cut(s) 891, 1491, 1703
BseXI GCAGC 6 cut(s) 200, 605, 885, 1069, 1501, 2500
BseYI CCCAGC 1 cut(s) 181
Bsh1236I CGCG 6 cut(s) 191, 338, 343, 591, 783, 988
Bsh1285I CGRYCG 2 cut(s) 87, 189
BshFI GGCC 9 cut(s) 92, 134, 299, 725, 761, 1106, 1346, 2239, 2254
BshVI ATCGAT 2 cut(s) 639, 977
BsiEI CGRYCG 2 cut(s) 87, 189
BsiHKAI GWGCWC 4 cut(s) 141, 521, 1036, 1979
BsiHKCI CYCGRG 1 cut(s) 1659
BsiSI CCGG 5 cut(s) 8, 300, 1086, 2236, 2469
BsiWI CGTACG 1 cut(s) 377
BslFI GGGAC 1 cut(s) 2770
BslI CCNNNNNNNGG 7 cut(s) 58, 672, 712, 1123, 1898, 2356, 2430
BsmAI GTCTC 6 cut(s) 89, 336, 520, 828, 873, 2741
BsmBI CGTCTC 1 cut(s) 89
BsmFI GGGAC 1 cut(s) 2770
BsmI GAATGC 1 cut(s) 707
BsnI GGCC 9 cut(s) 92, 134, 299, 725, 761, 1106, 1346, 2239, 2254
BsoBI CYCGRG 1 cut(s) 1659
Bsp1286I GDGCHC 4 cut(s) 141, 521, 1036, 1979
Bsp13I TCCGGA 1 cut(s) 7
Bsp143I GATC 7 cut(s) 552, 1113, 1604, 2119, 2229, 2701, 2820
Bsp19I CCATGG 1 cut(s) 2713
BspANI GGCC 9 cut(s) 92, 134, 299, 725, 761, 1106, 1346, 2239, 2254
BspDI ATCGAT 2 cut(s) 639, 977
BspEI TCCGGA 1 cut(s) 7
BspFNI CGCG 6 cut(s) 191, 338, 343, 591, 783, 988
BspHI TCATGA 1 cut(s) 2407
BspLI GGNNCC 5 cut(s) 6, 180, 1986, 2681, 2758
BspMAI CTGCAG 1 cut(s) 1857
BspMI ACCTGC 2 cut(s) 801, 2800
BspPI GGATC 5 cut(s) 1108, 1612, 2127, 2696, 2828
BspQI GCTCTTC 2 cut(s) 809, 960
BsrBI CCGCTC 2 cut(s) 13, 825
BsrDI GCAATG 1 cut(s) 2599
BsrFI RCCGGY 2 cut(s) 1085, 2468
BsrI ACTGG 4 cut(s) 74, 1144, 2121, 2220
BssAI RCCGGY 2 cut(s) 1085, 2468
BssECI CCNNGG 8 cut(s) 240, 477, 546, 726, 727, 1428, 1924, 2713
BssHII GCGCGC 1 cut(s) 589
BssMI GATC 7 cut(s) 552, 1113, 1604, 2119, 2229, 2701, 2820
BssNI GRCGYC 1 cut(s) 746
BssSI CACGAG 1 cut(s) 140
BssT1I CCWWGG 5 cut(s) 477, 546, 1428, 1924, 2713
Bst2BI CACGAG 1 cut(s) 140
Bst2UI CCWGG 5 cut(s) 728, 1280, 2031, 2576, 2818
Bst4CI ACNGT 6 cut(s) 401, 417, 523, 1208, 1327, 2185
Bst6I CTCTTC 5 cut(s) 809, 960, 1590, 2080, 2631
BstACI GRCGYC 1 cut(s) 746
BstBAI YACGTR 1 cut(s) 280
BstC8I GCNNGC 3 cut(s) 591, 1441, 1716
BstDSI CCRYGG 1 cut(s) 2713
BstENI CCTNNNNNAGG 1 cut(s) 1896
BstF5I GGATG 1 cut(s) 858
BstFNI CGCG 6 cut(s) 191, 338, 343, 591, 783, 988
BstH2I RGCGCY 1 cut(s) 248
BstHHI GCGC 5 cut(s) 239, 247, 591, 593, 1910
BstKTI GATC 7 cut(s) 555, 1116, 1607, 2122, 2232, 2704, 2823
BstMAI GTCTC 6 cut(s) 89, 336, 520, 828, 873, 2741
BstMBI GATC 7 cut(s) 552, 1113, 1604, 2119, 2229, 2701, 2820
BstMCI CGRYCG 2 cut(s) 87, 189
BstMWI GCNNNNNNNGC 6 cut(s) 563, 1706, 1715, 1852, 2510, 2801
BstNI CCWGG 5 cut(s) 728, 1280, 2031, 2576, 2818
BstNSI RCATGY 1 cut(s) 1944
BstSCI CCNGG 6 cut(s) 299, 726, 1278, 2029, 2574, 2816
BstSFI CTRYAG 4 cut(s) 813, 1374, 1620, 1853
BstUI CGCG 6 cut(s) 191, 338, 343, 591, 783, 988
BstV1I GCAGC 6 cut(s) 200, 605, 885, 1069, 1501, 2500
BstV2I GAAGAC 6 cut(s) 75, 914, 1134, 1398, 2375, 2438
BstX2I RGATCY 2 cut(s) 1113, 2701
BstYI RGATCY 2 cut(s) 1113, 2701
Bsu15I ATCGAT 2 cut(s) 639, 977
Bsu36I CCTNAGG 1 cut(s) 386
BsuI GTATCC 2 cut(s) 957, 2667
BsuRI GGCC 9 cut(s) 92, 134, 299, 725, 761, 1106, 1346, 2239, 2254
BsuTUI ATCGAT 2 cut(s) 639, 977
BtgI CCRYGG 1 cut(s) 2713
BtsCI GGATG 1 cut(s) 858
BtsI GCAGTG 1 cut(s) 1850
BtsIMutI CAGTG 6 cut(s) 519, 1323, 1569, 1614, 1850, 2155
BveI ACCTGC 2 cut(s) 801, 2800
Cac8I GCNNGC 3 cut(s) 591, 1441, 1716
CaiI CAGNNNCTG 1 cut(s) 2705
CciI TCATGA 1 cut(s) 2407
CfoI GCGC 5 cut(s) 239, 247, 591, 593, 1910
Cfr10I RCCGGY 2 cut(s) 1085, 2468
ClaI ATCGAT 2 cut(s) 639, 977
CpoI CGGWCCG 1 cut(s) 15
CseI GACGC 4 cut(s) 180, 327, 754, 977
Csp6I GTAC 8 cut(s) 118, 378, 738, 1209, 1368, 1447, 2181, 2708
CspCI CAANNNNNGTGG 2 cut(s) 2749, 2784
CspI CGGWCCG 1 cut(s) 15
CviQI GTAC 8 cut(s) 118, 378, 738, 1209, 1368, 1447, 2181, 2708
DpnI GATC 7 cut(s) 554, 1115, 1606, 2121, 2231, 2703, 2822
DpnII GATC 7 cut(s) 552, 1113, 1604, 2119, 2229, 2701, 2820
DraI TTTAAA 1 cut(s) 2781
DrdI GACNNNNNNGTC 1 cut(s) 2220
DseDI GACNNNNNNGTC 1 cut(s) 2220
EaeI YGGCCR 2 cut(s) 759, 2237
Eam1104I CTCTTC 5 cut(s) 809, 960, 1590, 2080, 2631
EarI CTCTTC 5 cut(s) 809, 960, 1590, 2080, 2631
EciI GGCGGA 2 cut(s) 28, 270
Ecl136II GAGCTC 2 cut(s) 139, 1977
Eco130I CCWWGG 5 cut(s) 477, 546, 1428, 1924, 2713
Eco147I AGGCCT 2 cut(s) 1346, 2254
Eco24I GRGCYC 2 cut(s) 141, 1979
Eco47I GGWCC 9 cut(s) 15, 29, 178, 382, 1984, 2213, 2536, 2578, 2757
Eco53kI GAGCTC 2 cut(s) 139, 1977
Eco57I CTGAAG 7 cut(s) 383, 782, 926, 1545, 2072, 2369, 2432
Eco72I CACGTG 1 cut(s) 280
Eco81I CCTNAGG 1 cut(s) 386
Eco88I CYCGRG 1 cut(s) 1659
EcoICRI GAGCTC 2 cut(s) 139, 1977
EcoNI CCTNNNNNAGG 1 cut(s) 1896
EcoO109I RGGNCCY 4 cut(s) 1105, 1984, 2536, 2578
EcoRII CCWGG 5 cut(s) 726, 1278, 2029, 2574, 2816
EcoT14I CCWWGG 5 cut(s) 477, 546, 1428, 1924, 2713
EcoT38I GRGCYC 2 cut(s) 141, 1979
ErhI CCWWGG 5 cut(s) 477, 546, 1428, 1924, 2713
Esp3I CGTCTC 1 cut(s) 89
FaqI GGGAC 1 cut(s) 2770
FauI CCCGC 1 cut(s) 161
FblI GTMKAC 1 cut(s) 78
FokI GGATG 1 cut(s) 845
FriOI GRGCYC 2 cut(s) 141, 1979
FspBI CTAG 3 cut(s) 1022, 2625, 2840
GlaI GCGC 5 cut(s) 238, 246, 590, 592, 1909
GsaI CCCAGC 1 cut(s) 185
HaeII RGCGCY 1 cut(s) 248
HaeIII GGCC 9 cut(s) 92, 134, 299, 725, 761, 1106, 1346, 2239, 2254
HapII CCGG 5 cut(s) 8, 300, 1086, 2236, 2469
HgaI GACGC 4 cut(s) 180, 327, 754, 977
HhaI GCGC 5 cut(s) 239, 247, 591, 593, 1910
Hin1I GRCGYC 1 cut(s) 746
Hin6I GCGC 5 cut(s) 237, 245, 589, 591, 1908
HinP1I GCGC 5 cut(s) 237, 245, 589, 591, 1908
HincII GTYRAC 3 cut(s) 690, 1065, 1417
HindII GTYRAC 3 cut(s) 690, 1065, 1417
HpaI GTTAAC 1 cut(s) 1417
HpaII CCGG 5 cut(s) 8, 300, 1086, 2236, 2469
HphI GGTGA 9 cut(s) 856, 1393, 1720, 1797, 1895, 2339, 2381, 2570, 2612
Hpy166II GTNNAC 9 cut(s) 79, 118, 283, 690, 992, 1065, 1417, 1567, 2213
Hpy8I GTNNAC 9 cut(s) 79, 118, 283, 690, 992, 1065, 1417, 1567, 2213
Hpy99I CGWCG 6 cut(s) 196, 296, 343, 430, 623, 748
HpyAV CCTTC 9 cut(s) 388, 625, 835, 1127, 1357, 1569, 1874, 2279, 2693
HpyCH4III ACNGT 6 cut(s) 401, 417, 523, 1208, 1327, 2185
HpyCH4IV ACGT 2 cut(s) 279, 2209
HpyF10VI GCNNNNNNNGC 6 cut(s) 563, 1706, 1715, 1852, 2510, 2801
HpySE526I ACGT 2 cut(s) 279, 2209
Hsp92I GRCGYC 1 cut(s) 746
HspAI GCGC 5 cut(s) 237, 245, 589, 591, 1908
Kpn2I TCCGGA 1 cut(s) 7
KspAI GTTAAC 1 cut(s) 1417
Kzo9I GATC 7 cut(s) 552, 1113, 1604, 2119, 2229, 2701, 2820
LguI GCTCTTC 2 cut(s) 809, 960
LmnI GCTCC 7 cut(s) 10, 204, 266, 783, 809, 1232, 1784
Lsp1109I GCAGC 6 cut(s) 200, 605, 885, 1069, 1501, 2500
LweI GCATC 4 cut(s) 214, 919, 925, 1606
MaeI CTAG 3 cut(s) 1022, 2625, 2840
MaeII ACGT 2 cut(s) 279, 2209
MalI GATC 7 cut(s) 554, 1115, 1606, 2121, 2231, 2703, 2822
MbiI CCGCTC 2 cut(s) 13, 825
MboI GATC 7 cut(s) 552, 1113, 1604, 2119, 2229, 2701, 2820
MfeI CAATTG 1 cut(s) 2460
MflI RGATCY 2 cut(s) 1113, 2701
MhlI GDGCHC 4 cut(s) 141, 521, 1036, 1979
MluI ACGCGT 1 cut(s) 336
MmeI TCCRAC 6 cut(s) 156, 399, 426, 630, 1104, 1525
MroI TCCGGA 1 cut(s) 7
MroXI GAANNNNTTC 2 cut(s) 287, 2165
MseI TTAA 7 cut(s) 1251, 1338, 1416, 1482, 2615, 2780, 2866
MslI CAYNNNNRTG 3 cut(s) 323, 1509, 1730
MspA1I CMGCKG 3 cut(s) 898, 1937, 2504
MspI CCGG 5 cut(s) 8, 300, 1086, 2236, 2469
MspR9I CCNGG 6 cut(s) 301, 728, 1280, 2031, 2576, 2818
MunI CAATTG 1 cut(s) 2460
Mva1269I GAATGC 1 cut(s) 707
MvaI CCWGG 5 cut(s) 728, 1280, 2031, 2576, 2818
MvnI CGCG 6 cut(s) 191, 338, 343, 591, 783, 988
MwoI GCNNNNNNNGC 6 cut(s) 563, 1706, 1715, 1852, 2510, 2801
NciI CCSGG 1 cut(s) 301
NcoI CCATGG 1 cut(s) 2713
NdeII GATC 7 cut(s) 552, 1113, 1604, 2119, 2229, 2701, 2820
NlaIV GGNNCC 5 cut(s) 6, 180, 1986, 2681, 2758
NmeAIII GCCGAG 4 cut(s) 118, 160, 221, 652
NspI RCATGY 1 cut(s) 1944
OliI CACNNNNGTG 1 cut(s) 323
PaeR7I CTCGAG 1 cut(s) 1659
PagI TCATGA 1 cut(s) 2407
PaqCI CACCTGC 1 cut(s) 2800
PasI CCCWGGG 1 cut(s) 727
PauI GCGCGC 1 cut(s) 589
PceI AGGCCT 2 cut(s) 1346, 2254
PciSI GCTCTTC 2 cut(s) 809, 960
PcsI WCGNNNNNNNCGW 2 cut(s) 291, 624
PctI GAATGC 1 cut(s) 707
PdmI GAANNNNTTC 2 cut(s) 287, 2165
Pfl23II CGTACG 1 cut(s) 377
PflFI GACNNNGTC 2 cut(s) 83, 190
PfoI TCCNGGA 2 cut(s) 2574, 2816
PmaCI CACGTG 1 cut(s) 280
PmlI CACGTG 1 cut(s) 280
Ppu21I YACGTR 1 cut(s) 280
PpuMI RGGWCCY 3 cut(s) 1984, 2536, 2578
PsiI TTATAA 1 cut(s) 710
Psp124BI GAGCTC 2 cut(s) 141, 1979
Psp5II RGGWCCY 3 cut(s) 1984, 2536, 2578
Psp6I CCWGG 5 cut(s) 726, 1278, 2029, 2574, 2816
PspCI CACGTG 1 cut(s) 280
PspFI CCCAGC 1 cut(s) 181
PspGI CCWGG 5 cut(s) 726, 1278, 2029, 2574, 2816
PspLI CGTACG 1 cut(s) 377
PspN4I GGNNCC 5 cut(s) 6, 180, 1986, 2681, 2758
PspPPI RGGWCCY 3 cut(s) 1984, 2536, 2578
PsrI GAACNNNNNNTAC 2 cut(s) 2275, 2307
PstI CTGCAG 1 cut(s) 1857
PstNI CAGNNNCTG 1 cut(s) 2705
PsuI RGATCY 2 cut(s) 1113, 2701
PsyI GACNNNGTC 2 cut(s) 83, 190
PteI GCGCGC 1 cut(s) 589
PvuII CAGCTG 2 cut(s) 898, 2504
RsaI GTAC 8 cut(s) 119, 379, 739, 1210, 1369, 1448, 2182, 2709
RsaNI GTAC 8 cut(s) 118, 378, 738, 1209, 1368, 1447, 2181, 2708
RseI CAYNNNNRTG 3 cut(s) 323, 1509, 1730
Rsr2I CGGWCCG 1 cut(s) 15
RsrII CGGWCCG 1 cut(s) 15
SacI GAGCTC 2 cut(s) 141, 1979
SapI GCTCTTC 2 cut(s) 809, 960
SaqAI TTAA 7 cut(s) 1251, 1338, 1416, 1482, 2615, 2780, 2866
Sau3AI GATC 7 cut(s) 552, 1113, 1604, 2119, 2229, 2701, 2820
ScaI AGTACT 1 cut(s) 1448
ScrFI CCNGG 6 cut(s) 301, 728, 1280, 2031, 2576, 2818
SduI GDGCHC 4 cut(s) 141, 521, 1036, 1979
SfaNI GCATC 4 cut(s) 214, 919, 925, 1606
SfcI CTRYAG 4 cut(s) 813, 1374, 1620, 1853
Sfr274I CTCGAG 1 cut(s) 1659
SinI GGWCC 9 cut(s) 15, 29, 178, 382, 1984, 2213, 2536, 2578, 2757
SlaI CTCGAG 1 cut(s) 1659
SmiMI CAYNNNNRTG 3 cut(s) 323, 1509, 1730
SmlI CTYRAG 5 cut(s) 1109, 1290, 1659, 1956, 2674
SmoI CTYRAG 5 cut(s) 1109, 1290, 1659, 1956, 2674
SpeI ACTAGT 1 cut(s) 2839
SseBI AGGCCT 2 cut(s) 1346, 2254
SspMI CTAG 3 cut(s) 1022, 2625, 2840
SstI GAGCTC 2 cut(s) 141, 1979
StuI AGGCCT 2 cut(s) 1346, 2254
StyD4I CCNGG 6 cut(s) 299, 726, 1278, 2029, 2574, 2816
StyI CCWWGG 5 cut(s) 477, 546, 1428, 1924, 2713
TaaI ACNGT 6 cut(s) 401, 417, 523, 1208, 1327, 2185
TaiI ACGT 2 cut(s) 282, 2212
TaqII GACCGA 1 cut(s) 73
TatI WGTACW 4 cut(s) 1208, 1367, 1446, 2707
TauI GCSGC 7 cut(s) 168, 313, 626, 735, 761, 869, 1940
Tru1I TTAA 7 cut(s) 1251, 1338, 1416, 1482, 2615, 2780, 2866
Tru9I TTAA 7 cut(s) 1251, 1338, 1416, 1482, 2615, 2780, 2866
TscAI CASTG 6 cut(s) 526, 1330, 1569, 1614, 1857, 2155
TseI GCWGC 6 cut(s) 213, 593, 898, 1082, 1514, 2513
TspDTI ATGAA 9 cut(s) 561, 947, 1064, 1175, 1404, 2115, 2261, 2396, 2850
TspGWI ACGGA 4 cut(s) 395, 634, 851, 1169
TspRI CASTG 6 cut(s) 526, 1330, 1569, 1614, 1857, 2155
Tth111I GACNNNGTC 2 cut(s) 83, 190
VpaK11BI GGWCC 9 cut(s) 15, 29, 178, 382, 1984, 2213, 2536, 2578, 2757
XagI CCTNNNNNAGG 1 cut(s) 1896
XapI RAATTY 6 cut(s) 218, 485, 946, 1831, 2102, 2861
XbaI TCTAGA 1 cut(s) 1021
XceI RCATGY 1 cut(s) 1944
XhoI CTCGAG 1 cut(s) 1659
XmiI GTMKAC 1 cut(s) 78
XmnI GAANNNNTTC 2 cut(s) 287, 2165
XspI CTAG 3 cut(s) 1022, 2625, 2840
ZrmI AGTACT 1 cut(s) 1448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.