Rorug05G0519700

OST-HTH/LOTUS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000181
Physical Location & Seq
Reverse (-)
70380956 .. 70391060
10105 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0519700.1

Sequence Viewer

Length: 3006 bp
ATGGCGTCGAAGTTCGGGTTGGCCGGCGGGATACCGGAGCGGCGGGTCCGGCCCATTTGGGACGCCATCGATTCTCGCCAATTCAAAAACGCTCTCAAGCTCGTCACCGCTCTCCTCTCCAAGTTTCCCAATTCCCCTTACTGTCTGGCGCTTAAAGCTCTCATCCTGGAAAGGATGGGGAAATCGGAAGAAGCATTGTCGCTTTGCCTCAACGCCAAGGAGCAGTTGCACAAAAACGACTCCGTTTTGATGGACGATCTCACTCTCAGCACCTTGCAAATCGTCTTCCAACGCCTCGATCACCTGGAAATGGCAACCAGTTGTTACGAATATGCTTGCGGTAAATTTCCAAGCAATTTGGAGCTGATGATGGGGCTCTTTAACTGCTATGTTCGCGAATACTCTTTTGTCAAGCAGCAACAGACAGCTATAAGAATGTACAAACTTGTTGGCGAGGAAAGGTTTTTGCTCTGGGCTGTGTGTAGCATCCAGTTACAGGTGTTTTGTGGAAACGGAGGAGAAAAGCTGTTACTCTTAGCTGAAGGCTTAGTGAAGAAGCATGTTGTCTCTCATAGCTTGCATGAGCCTGAAGCTCTCATGGTCTATATTTCCATATTGGAACAACAAGCAAAGTATGGGGATGCTTTGGAGATTCTCTCTGGTAAATTAGGATCGCTTTTACTGGTTGAAGTTGATAAGCTACGCATACAGGGGAGGCTGCTTGCTCGGGTGGGTGACTACGCTGCTGCCGCCATAATATTTCAAAAAATTCTCGAACTATGTCCTGATGATTGGGAATGTTTCCTACATTATCTAGGCTGTTTGCTGGAGGATGACAGCAATTGGTGCAATAGGGCCATAACAGATCCAATTCATCCTCCGAAATTTGTCGAGTGCAAGATTTCAAACTTGACAGATGAAGTGTTTGATTCTCGTATGTCAAATGCATCGGAATTTGTAGAAAAGTTACAAGGAAATACTGGCAATACTTTTGCAAGGTGTCCATACTTGGCAAATATTGAAATTGAAAGGAGAAAGTGCTTACATGGCAAGGGGGATGATGGCAAGTTAATGGAGGCTCTAATCCAGTACTTTTCTGGGTTTGGTCACTTGGCCTGCTTCACTTCTGATGTTGAGATGTTTCTTGAAGTCTTAACTCCTGATAAGAAGGCAGAACTCTTGGGGAAGTTAAGGGAAAGTTCTGCCTCCATTTCAGCTGTGCCAGCAAAAGTACTTGGGCAGTCAATAACACTCTTTAAAATTCAAGAACTGATCGGAAACATATCCAAGCTTACTGTTGTTGAACTTGAGGGCTCTGTTGTGCAGATGGTGGAGATGTACTGTAAAAACCTACCACTTTCAAAGGACTTGGATTCTCAAGAAAGTATGCATGGGGAAGAGCTGCTATCACTAGCTTGCAATGTATTGATTCAGTTATACTGGCGCACCAGGAATGTTGGCTACTTTGTTGAGGCAATCATGTTGTTGGAGTTTGGCTTGACTATACGAAGACATGTATGGCAGTACAAGATCTTGTTGCTGCATTTGTATTCCCACTTGGGTGCCCTTTCTCTAGCATATGAATGGTTCAAATCACTCGATGTTAAAAATATCTTGATGGAAACTGTTTCACACCACATTTTACCTCAGATGTTGGTGTCTCCCCTCTGGGTAGATATAAATAATCTGCTAAAGGATTATCTCAAGTTTATGGATGACCATTTGAGAGAATCAGCGGATCTTACGTTTCTTGCCTATCGCCATAGAAATTACTCAAAAGTAATTGAATTTGTCCAGTTTAAAGAGCGACTACAACATTCTAATCAGTATCTAGTGGCGAGGGTTGAAGGACCCATTCTTCAGTTAAAGCAGAATGCAGTTAACATTGAAGAGGAAGAGGCGGTTCTTGAAAGCTTGAAATGTGGTATTCACTTTGTTGAACTCTCTAATGAGATTGGATCCAAGTCTCTGACCTTCAATGAAGATTTGCAATCACGTCCCTGGTGGGCACCAACTTCAGAGAGAAACTATCTTTTAGGTCCTTATGAAGGAGTATCATACTATCCCAGAGAGAACTCGATGACAGAAAGGGAGGCAAATGTACGGAGCATAATTGAGAGGAAATCTCTTCTTCCTCGGATGATTTATCTGTCCATACAGAGCGCTTCAACTTCACTCAAGGAAAATCTGGAAGTCAATGGGTCAGTGTCTGACCCCAAAATCCCCTCAGAGCTGAAGATTTTGCTTGAGCGATATGCAAAGATGTTGGGATATTCATTCACTGATGCAATAGAAGTGGTCTTGGGAGTTTCTGGTGGCCAAAAGTCTTTTGAGGTCTTTGGTTCGGACTTGATTGACTGGATAAACTTTTCTGTGTTTCTGAATGCATGGAACTTGAGTTCCCATGAGATTGGGCTGGCAAATGGCCGTTGTGCGGATTCTATATTGGAGAAGTATGTTTCAGATAAAGTTAGCTCCATGGAGACACTAATTACCTCTCCTTGGGTTGATCTTCCAATTCTGGTACAGTTAGTTACAGAATCGTTGGCCTGGCATGGTCTTGTAATTCAATCTTGTGTTCGTTCATGTTTCCCATCGGGAAAGAAGAAGAAGAAAACTGGATTTGCAGATCAGTCCTGTCTGTCTCGTATCCGTGATTCAGTGTTGTCTTTATGCAATACTCTAGAAAAGGTTAGGAAATGGTTAAAAGAACAGATCAACAGGCCAGAGGATGAAAATATGGAGACTCTACTGTCCTCTTTGAGGAAGAAAGAACAGATCGAGGGACCTGGACAGGTTTTCCAGATTATAGAAACTTTTACCTCATCAATAAATGACACAGAGCTTGGTGAGAGAATTTCCCAATCATTGAAGTCTTGGAGTCATGTTGATGTTGCAAGGAAGATAGTTGCTGGGAAGTGTACAGTACTGTCCGAGTTTCTCCGAATTTGTGATTCGAAATCAAAGTTGTTTCAAGCACTGAAACAGCAGATAGCTCAAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 OST-HTH RRM_1

Protein Analysis

1001

Amino Acids

113.57

Weight (kDa)

6.02

Isoelectric Point (pI)

44.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NatB_MDM20 PF09797 307 - 625 1.5e-57 N-acetyltransferase B complex (NatB) non catalytic subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2752
AccB1I GGYRCC 2 cut(s) 1562, 2008
AccBSI CCGCTC 2 cut(s) 40, 110
AccII CGCG 1 cut(s) 396
AciI CCGC 9 cut(s) 27, 40, 43, 108, 339, 750, 1736, 1901, 2435
AclWI GGATC 5 cut(s) 679, 860, 1746, 1953, 1966
AcoI YGGCCR 3 cut(s) 21, 2317, 2425
AcsI RAATTY 8 cut(s) 344, 768, 884, 953, 1260, 1787, 2856, 2946
AcuI CTGAAG 5 cut(s) 561, 609, 1844, 2001, 2255
AcyI GRCGYC 2 cut(s) 5, 63
AfaI GTAC 9 cut(s) 440, 1091, 1233, 1340, 1526, 2103, 2526, 2923, 2928
AfeI AGCGCT 1 cut(s) 2164
AfiI CCNNNNNNNGG 6 cut(s) 310, 496, 2048, 2434, 2502, 2763
AflIII ACRYGT 1 cut(s) 1513
AjiI CACGTC 1 cut(s) 1997
AjnI CCWGG 6 cut(s) 165, 303, 1448, 2000, 2549, 2788
AjuI GAANNNNNNNTTGG 1 cut(s) 34
AleI CACNNNNGTG 1 cut(s) 1560
AloI GAACNNNNNNTCC 4 cut(s) 2383, 2384, 2415, 2416
Alw26I GTCTC 6 cut(s) 571, 1665, 1971, 2477, 2649, 2738
AlwI GGATC 5 cut(s) 679, 860, 1746, 1953, 1966
AlwNI CAGNNNCTG 1 cut(s) 2210
Ama87I CYCGRG 1 cut(s) 726
Aor51HI AGCGCT 1 cut(s) 2164
AoxI GGCC 8 cut(s) 21, 50, 855, 1113, 2317, 2425, 2547, 2723
ApeKI GCWGC 6 cut(s) 415, 718, 743, 746, 1402, 1540
ApoI RAATTY 8 cut(s) 344, 768, 884, 953, 1260, 1787, 2856, 2946
AspLEI GCGC 3 cut(s) 151, 1446, 2165
AspS9I GGNCC 6 cut(s) 46, 51, 855, 1850, 2039, 2786
AsuHPI GGTGA 4 cut(s) 97, 293, 746, 2861
AsuII TTCGAA 1 cut(s) 2957
AvaI CYCGRG 1 cut(s) 726
AvaII GGWCC 4 cut(s) 46, 1850, 2039, 2786
BaeGI GKGCMC 2 cut(s) 1567, 2011
BalI TGGCCA 1 cut(s) 2319
BamHI GGATCC 1 cut(s) 1958
BanI GGYRCC 2 cut(s) 1562, 2008
BanII GRGCYC 2 cut(s) 378, 1316
BbsI GAAGAC 2 cut(s) 277, 1516
BbvI GCAGC 6 cut(s) 427, 705, 730, 733, 1389, 1527
BccI CCATC 8 cut(s) 74, 169, 244, 364, 1055, 1321, 1612, 2602
BceAI ACGGC 1 cut(s) 2412
BciT130I CCWGG 6 cut(s) 167, 305, 1450, 2002, 2551, 2790
BciVI GTATCC 2 cut(s) 24, 2660
BcoDI GTCTC 6 cut(s) 571, 1665, 1971, 2477, 2649, 2738
BfaI CTAG 5 cut(s) 815, 1412, 1574, 1832, 2684
BfoI RGCGCY 2 cut(s) 152, 2166
BfuI GTATCC 2 cut(s) 24, 2660
BglII AGATCT 1 cut(s) 1530
BisI GCNGC 8 cut(s) 41, 416, 719, 744, 747, 750, 1403, 1541
BlsI GCNGC 8 cut(s) 42, 417, 720, 745, 748, 751, 1404, 1542
BmcAI AGTACT 3 cut(s) 1091, 1233, 2928
Bme1390I CCNGG 6 cut(s) 167, 305, 1450, 2002, 2551, 2790
Bme18I GGWCC 4 cut(s) 46, 1850, 2039, 2786
BmeT110I CYCGRG 1 cut(s) 726
BmgBI CACGTC 1 cut(s) 1997
BmgT120I GGNCC 6 cut(s) 46, 51, 855, 1850, 2039, 2786
BmiI GGNNCC 6 cut(s) 47, 1564, 1852, 1960, 2010, 2787
BmrFI CCNGG 6 cut(s) 167, 305, 1450, 2002, 2551, 2790
BmsI GCATC 4 cut(s) 495, 631, 956, 2275
BpiI GAAGAC 2 cut(s) 277, 1516
BplI GAGNNNNNCTC 4 cut(s) 641, 673, 2110, 2142
BpmI CTGGAG 1 cut(s) 848
Bpu14I TTCGAA 1 cut(s) 2957
BpuEI CTTGAG 8 cut(s) 80, 1328, 1362, 1688, 2162, 2267, 2416, 2982
Bsa29I ATCGAT 1 cut(s) 69
BsaHI GRCGYC 2 cut(s) 5, 63
BsaJI CCNNGG 5 cut(s) 216, 2000, 2135, 2478, 2501
BsaWI WCCGGW 1 cut(s) 34
Bsc4I CCNNNNNNNGG 6 cut(s) 310, 496, 2048, 2434, 2502, 2763
Bse118I RCCGGY 1 cut(s) 23
Bse1I ACTGG 9 cut(s) 318, 490, 687, 985, 1087, 1445, 1795, 2363, 2623
Bse3DI GCAATG 1 cut(s) 1426
BseBI CCWGG 6 cut(s) 167, 305, 1450, 2002, 2551, 2790
BseCI ATCGAT 1 cut(s) 69
BseDI CCNNGG 5 cut(s) 216, 2000, 2135, 2478, 2501
BseLI CCNNNNNNNGG 6 cut(s) 310, 496, 2048, 2434, 2502, 2763
BseMI GCAATG 1 cut(s) 1426
BseMII CTCAG 3 cut(s) 280, 1661, 2241
BseNI ACTGG 9 cut(s) 318, 490, 687, 985, 1087, 1445, 1795, 2363, 2623
BseRI GAGGAG 2 cut(s) 104, 531
BseSI GKGCMC 2 cut(s) 1567, 2011
BseXI GCAGC 6 cut(s) 427, 705, 730, 733, 1389, 1527
BseYI CCCAGC 1 cut(s) 2912
BsgI GTGCAG 1 cut(s) 1343
Bsh1236I CGCG 1 cut(s) 396
BshFI GGCC 8 cut(s) 23, 52, 857, 1115, 2319, 2427, 2549, 2725
BshNI GGYRCC 2 cut(s) 1562, 2008
BshVI ATCGAT 1 cut(s) 69
BsiHKCI CYCGRG 1 cut(s) 726
BsiSI CCGG 3 cut(s) 24, 35, 49
BslFI GGGAC 3 cut(s) 74, 1983, 2799
BslI CCNNNNNNNGG 6 cut(s) 310, 496, 2048, 2434, 2502, 2763
BsmAI GTCTC 6 cut(s) 571, 1665, 1971, 2477, 2649, 2738
BsmFI GGGAC 3 cut(s) 74, 1983, 2799
BsmI GAATGC 2 cut(s) 1879, 2389
BsnI GGCC 8 cut(s) 23, 52, 857, 1115, 2319, 2427, 2549, 2725
BsoBI CYCGRG 1 cut(s) 726
Bsp119I TTCGAA 1 cut(s) 2957
Bsp1286I GDGCHC 4 cut(s) 378, 1316, 1567, 2011
Bsp1407I TGTACA 2 cut(s) 438, 2921
Bsp19I CCATGG 1 cut(s) 2478
Bsp68I TCGCGA 1 cut(s) 396
BspACI CCGC 9 cut(s) 27, 40, 43, 108, 339, 750, 1736, 1901, 2435
BspANI GGCC 8 cut(s) 23, 52, 857, 1115, 2319, 2427, 2549, 2725
BspCNI CTCAG 3 cut(s) 279, 1660, 2240
BspDI ATCGAT 1 cut(s) 69
BspFNI CGCG 1 cut(s) 396
BspLI GGNNCC 6 cut(s) 47, 1564, 1852, 1960, 2010, 2787
BspPI GGATC 5 cut(s) 679, 860, 1746, 1953, 1966
BspQI GCTCTTC 1 cut(s) 1392
BspT104I TTCGAA 1 cut(s) 2957
BspT107I GGYRCC 2 cut(s) 1562, 2008
BsrBI CCGCTC 2 cut(s) 40, 110
BsrDI GCAATG 1 cut(s) 1426
BsrFI RCCGGY 1 cut(s) 23
BsrGI TGTACA 2 cut(s) 438, 2921
BsrI ACTGG 9 cut(s) 318, 490, 687, 985, 1087, 1445, 1795, 2363, 2623
BssAI RCCGGY 1 cut(s) 23
BssECI CCNNGG 5 cut(s) 216, 2000, 2135, 2478, 2501
BssNI GRCGYC 2 cut(s) 5, 63
BssT1I CCWWGG 3 cut(s) 216, 2478, 2501
Bst2UI CCWGG 6 cut(s) 167, 305, 1450, 2002, 2551, 2790
Bst4CI ACNGT 8 cut(s) 143, 1297, 1343, 1627, 2529, 2754, 2926, 2931
Bst6I CTCTTC 4 cut(s) 1392, 1884, 1890, 2133
BstACI GRCGYC 2 cut(s) 5, 63
BstAPI GCANNNNNTGC 1 cut(s) 846
BstAUI TGTACA 2 cut(s) 438, 2921
BstBI TTCGAA 1 cut(s) 2957
BstC8I GCNNGC 8 cut(s) 25, 337, 578, 723, 1117, 1224, 1417, 2418
BstDEI CTNAG 5 cut(s) 266, 535, 547, 1647, 2227
BstDSI CCRYGG 1 cut(s) 2478
BstENI CCTNNNNNAGG 2 cut(s) 2046, 2761
BstFNI CGCG 1 cut(s) 396
BstH2I RGCGCY 2 cut(s) 152, 2166
BstHHI GCGC 3 cut(s) 151, 1446, 2165
BstMAI GTCTC 6 cut(s) 571, 1665, 1971, 2477, 2649, 2738
BstMWI GCNNNNNNNGC 7 cut(s) 49, 155, 393, 749, 846, 1047, 1223
BstNI CCWGG 6 cut(s) 167, 305, 1450, 2002, 2551, 2790
BstNSI RCATGY 2 cut(s) 563, 1517
BstSCI CCNGG 6 cut(s) 165, 303, 1448, 2000, 2549, 2788
BstSLI GKGCMC 2 cut(s) 1567, 2011
BstUI CGCG 1 cut(s) 396
BstV1I GCAGC 6 cut(s) 427, 705, 730, 733, 1389, 1527
BstV2I GAAGAC 2 cut(s) 277, 1516
BstX2I RGATCY 4 cut(s) 865, 1530, 1738, 1958
BstXI CCANNNNNNTGG 1 cut(s) 2411
BstYI RGATCY 4 cut(s) 865, 1530, 1738, 1958
Bsu15I ATCGAT 1 cut(s) 69
BsuI GTATCC 2 cut(s) 24, 2660
BsuRI GGCC 8 cut(s) 23, 52, 857, 1115, 2319, 2427, 2549, 2725
BsuTUI ATCGAT 1 cut(s) 69
BtgI CCRYGG 1 cut(s) 2478
BtrI CACGTC 1 cut(s) 1997
BtsIMutI CAGTG 4 cut(s) 2211, 2280, 2667, 2978
BtuMI TCGCGA 1 cut(s) 396
Cac8I GCNNGC 8 cut(s) 25, 337, 578, 723, 1117, 1224, 1417, 2418
CaiI CAGNNNCTG 1 cut(s) 2210
CfoI GCGC 3 cut(s) 151, 1446, 2165
Cfr10I RCCGGY 1 cut(s) 23
Cfr13I GGNCC 6 cut(s) 46, 51, 855, 1850, 2039, 2786
ClaI ATCGAT 1 cut(s) 69
CseI GACGC 1 cut(s) 71
Csp6I GTAC 9 cut(s) 439, 1090, 1232, 1339, 1525, 2102, 2525, 2922, 2927
CspCI CAANNNNNGTGG 2 cut(s) 2277, 2312
CviQI GTAC 9 cut(s) 439, 1090, 1232, 1339, 1525, 2102, 2525, 2922, 2927
DdeI CTNAG 5 cut(s) 266, 535, 547, 1647, 2227
DraI TTTAAA 2 cut(s) 1258, 1801
DrdI GACNNNNNNGTC 1 cut(s) 2752
DseDI GACNNNNNNGTC 1 cut(s) 2752
EaeI YGGCCR 3 cut(s) 21, 2317, 2425
Eam1104I CTCTTC 4 cut(s) 1392, 1884, 1890, 2133
EarI CTCTTC 4 cut(s) 1392, 1884, 1890, 2133
Eco130I CCWWGG 3 cut(s) 216, 2478, 2501
Eco24I GRGCYC 2 cut(s) 378, 1316
Eco47I GGWCC 4 cut(s) 46, 1850, 2039, 2786
Eco47III AGCGCT 1 cut(s) 2164
Eco57I CTGAAG 5 cut(s) 561, 609, 1844, 2001, 2255
Eco88I CYCGRG 1 cut(s) 726
EcoNI CCTNNNNNAGG 2 cut(s) 2046, 2761
EcoO109I RGGNCCY 3 cut(s) 1850, 2039, 2786
EcoRII CCWGG 6 cut(s) 165, 303, 1448, 2000, 2549, 2788
EcoT14I CCWWGG 3 cut(s) 216, 2478, 2501
EcoT22I ATGCAT 3 cut(s) 949, 1392, 2389
EcoT38I GRGCYC 2 cut(s) 378, 1316
ErhI CCWWGG 3 cut(s) 216, 2478, 2501
FaqI GGGAC 3 cut(s) 74, 1983, 2799
FauI CCCGC 2 cut(s) 20, 36
FauNDI CATATG 1 cut(s) 1579
Fnu4HI GCNGC 8 cut(s) 41, 416, 719, 744, 747, 750, 1403, 1541
FriOI GRGCYC 2 cut(s) 378, 1316
Fsp4HI GCNGC 8 cut(s) 41, 416, 719, 744, 747, 750, 1403, 1541
FspBI CTAG 5 cut(s) 815, 1412, 1574, 1832, 2684
GlaI GCGC 3 cut(s) 150, 1445, 2164
GluI GCNGC 8 cut(s) 41, 416, 719, 744, 747, 750, 1403, 1541
GsaI CCCAGC 1 cut(s) 2916
GsuI CTGGAG 1 cut(s) 848
HaeII RGCGCY 2 cut(s) 152, 2166
HaeIII GGCC 8 cut(s) 23, 52, 857, 1115, 2319, 2427, 2549, 2725
HapII CCGG 3 cut(s) 24, 35, 49
HgaI GACGC 1 cut(s) 71
HhaI GCGC 3 cut(s) 151, 1446, 2165
Hin1I GRCGYC 2 cut(s) 5, 63
Hin6I GCGC 3 cut(s) 149, 1444, 2163
HinP1I GCGC 3 cut(s) 149, 1444, 2163
HincII GTYRAC 1 cut(s) 1882
HindII GTYRAC 1 cut(s) 1882
HindIII AAGCTT 2 cut(s) 1289, 1912
HpaI GTTAAC 1 cut(s) 1882
HpaII CCGG 3 cut(s) 24, 35, 49
HphI GGTGA 4 cut(s) 97, 293, 746, 2861
Hpy166II GTNNAC 2 cut(s) 1882, 2922
Hpy8I GTNNAC 2 cut(s) 1882, 2922
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 5 cut(s) 536, 1162, 1841, 1984, 2042
HpyCH4III ACNGT 8 cut(s) 143, 1297, 1343, 1627, 2529, 2754, 2926, 2931
HpyCH4IV ACGT 2 cut(s) 1745, 1996
HpyF10VI GCNNNNNNNGC 7 cut(s) 49, 155, 393, 749, 846, 1047, 1223
HpyF3I CTNAG 5 cut(s) 266, 535, 547, 1647, 2227
HpySE526I ACGT 2 cut(s) 1745, 1996
Hsp92I GRCGYC 2 cut(s) 5, 63
HspAI GCGC 3 cut(s) 149, 1444, 2163
KroI GCCGGC 1 cut(s) 23
KroNI GCCGGC 1 cut(s) 25
KspAI GTTAAC 1 cut(s) 1882
LguI GCTCTTC 1 cut(s) 1392
LmnI GCTCC 5 cut(s) 37, 220, 361, 2106, 2480
Lsp1109I GCAGC 6 cut(s) 427, 705, 730, 733, 1389, 1527
LweI GCATC 4 cut(s) 495, 631, 956, 2275
MaeI CTAG 5 cut(s) 815, 1412, 1574, 1832, 2684
MaeII ACGT 2 cut(s) 1745, 1996
MaeIII GTNAC 8 cut(s) 103, 323, 492, 528, 734, 966, 1106, 2533
MbiI CCGCTC 2 cut(s) 40, 110
MfeI CAATTG 1 cut(s) 841
MflI RGATCY 4 cut(s) 865, 1530, 1738, 1958
MhlI GDGCHC 4 cut(s) 378, 1316, 1567, 2011
MlsI TGGCCA 1 cut(s) 2319
MluNI TGGCCA 1 cut(s) 2319
MlyI GAGTC 3 cut(s) 233, 2740, 2890
MmeI TCCRAC 2 cut(s) 313, 1467
Mox20I TGGCCA 1 cut(s) 2319
Mph1103I ATGCAT 3 cut(s) 949, 1392, 2389
MroNI GCCGGC 1 cut(s) 23
MscI TGGCCA 1 cut(s) 2319
MslI CAYNNNNRTG 3 cut(s) 1560, 1582, 2889
Msp20I TGGCCA 1 cut(s) 2319
MspA1I CMGCKG 2 cut(s) 1217, 1736
MspI CCGG 3 cut(s) 24, 35, 49
MspR9I CCNGG 6 cut(s) 167, 305, 1450, 2002, 2551, 2790
MunI CAATTG 1 cut(s) 841
Mva1269I GAATGC 2 cut(s) 1879, 2389
MvaI CCWGG 6 cut(s) 167, 305, 1450, 2002, 2551, 2790
MvnI CGCG 1 cut(s) 396
MwoI GCNNNNNNNGC 7 cut(s) 49, 155, 393, 749, 846, 1047, 1223
NaeI GCCGGC 1 cut(s) 25
NcoI CCATGG 1 cut(s) 2478
NdeI CATATG 1 cut(s) 1579
NgoMIV GCCGGC 1 cut(s) 23
NlaIV GGNNCC 6 cut(s) 47, 1564, 1852, 1960, 2010, 2787
NmuCI GTSAC 3 cut(s) 103, 734, 1106
NruI TCGCGA 1 cut(s) 396
NsiI ATGCAT 3 cut(s) 949, 1392, 2389
NspI RCATGY 2 cut(s) 563, 1517
NspV TTCGAA 1 cut(s) 2957
OliI CACNNNNGTG 1 cut(s) 1560
PciI ACATGT 1 cut(s) 1513
PciSI GCTCTTC 1 cut(s) 1392
PctI GAATGC 2 cut(s) 1879, 2389
PdiI GCCGGC 1 cut(s) 25
PfoI TCCNGGA 1 cut(s) 165
PkrI GCNGC 8 cut(s) 42, 417, 720, 745, 748, 751, 1404, 1542
PleI GAGTC 3 cut(s) 233, 2740, 2889
PpsI GAGTC 3 cut(s) 233, 2740, 2889
PpuMI RGGWCCY 3 cut(s) 1850, 2039, 2786
PscI ACATGT 1 cut(s) 1513
Psp5II RGGWCCY 3 cut(s) 1850, 2039, 2786
Psp6I CCWGG 6 cut(s) 165, 303, 1448, 2000, 2549, 2788
PspFI CCCAGC 1 cut(s) 2912
PspGI CCWGG 6 cut(s) 165, 303, 1448, 2000, 2549, 2788
PspN4I GGNNCC 6 cut(s) 47, 1564, 1852, 1960, 2010, 2787
PspPI GGNCC 6 cut(s) 46, 51, 855, 1850, 2039, 2786
PspPPI RGGWCCY 3 cut(s) 1850, 2039, 2786
PstNI CAGNNNCTG 1 cut(s) 2210
PsuI RGATCY 4 cut(s) 865, 1530, 1738, 1958
PvuII CAGCTG 1 cut(s) 1217
RruI TCGCGA 1 cut(s) 396
RsaI GTAC 9 cut(s) 440, 1091, 1233, 1340, 1526, 2103, 2526, 2923, 2928
RsaNI GTAC 9 cut(s) 439, 1090, 1232, 1339, 1525, 2102, 2525, 2922, 2927
RseI CAYNNNNRTG 3 cut(s) 1560, 1582, 2889
SapI GCTCTTC 1 cut(s) 1392
SatI GCNGC 8 cut(s) 41, 416, 719, 744, 747, 750, 1403, 1541
Sau96I GGNCC 6 cut(s) 46, 51, 855, 1850, 2039, 2786
ScaI AGTACT 3 cut(s) 1091, 1233, 2928
SchI GAGTC 3 cut(s) 233, 2740, 2890
ScrFI CCNGG 6 cut(s) 167, 305, 1450, 2002, 2551, 2790
SduI GDGCHC 4 cut(s) 378, 1316, 1567, 2011
SfaNI GCATC 4 cut(s) 495, 631, 956, 2275
SfuI TTCGAA 1 cut(s) 2957
SinI GGWCC 4 cut(s) 46, 1850, 2039, 2786
SmiMI CAYNNNNRTG 3 cut(s) 1560, 1582, 2889
SmlI CTYRAG 8 cut(s) 95, 1307, 1377, 1703, 2177, 2246, 2395, 2997
SmoI CTYRAG 8 cut(s) 95, 1307, 1377, 1703, 2177, 2246, 2395, 2997
SsiI CCGC 9 cut(s) 27, 40, 43, 108, 339, 750, 1736, 1901, 2435
SspI AATATT 2 cut(s) 759, 1018
SspMI CTAG 5 cut(s) 815, 1412, 1574, 1832, 2684
StyD4I CCNGG 6 cut(s) 165, 303, 1448, 2000, 2549, 2788
StyI CCWWGG 3 cut(s) 216, 2478, 2501
TaaI ACNGT 8 cut(s) 143, 1297, 1343, 1627, 2529, 2754, 2926, 2931
TaiI ACGT 2 cut(s) 1748, 1999
TaqI TCGA 9 cut(s) 8, 69, 297, 774, 891, 1599, 2078, 2781, 2957
TatI WGTACW 7 cut(s) 438, 1089, 1231, 1338, 1524, 2921, 2926
TauI GCSGC 2 cut(s) 43, 752
TscAI CASTG 4 cut(s) 2211, 2287, 2667, 2985
TseFI GTSAC 3 cut(s) 103, 734, 1106
TseI GCWGC 6 cut(s) 415, 718, 743, 746, 1402, 1540
Tsp45I GTSAC 3 cut(s) 103, 734, 1106
TspDTI ATGAA 8 cut(s) 863, 933, 1596, 1995, 2061, 2265, 2574, 2748
TspGWI ACGGA 4 cut(s) 232, 528, 2119, 2642
TspRI CASTG 4 cut(s) 2211, 2287, 2667, 2985
VpaK11BI GGWCC 4 cut(s) 46, 1850, 2039, 2786
XagI CCTNNNNNAGG 2 cut(s) 2046, 2761
XapI RAATTY 8 cut(s) 344, 768, 884, 953, 1260, 1787, 2856, 2946
XbaI TCTAGA 1 cut(s) 2683
XceI RCATGY 2 cut(s) 563, 1517
XcmI CCANNNNNNNNNTGG 1 cut(s) 1094
XspI CTAG 5 cut(s) 815, 1412, 1574, 1832, 2684
ZrmI AGTACT 3 cut(s) 1091, 1233, 2928
Zsp2I ATGCAT 3 cut(s) 949, 1392, 2389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.