FvH4_1g02310

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000181
Physical Location & Seq
Forward (+)
1249215 .. 1250980
1766 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g02310.t1

Sequence Viewer

Length: 465 bp
ATGTCTCTCGAAATACCACTTATCTCCGGTGCCGACTCTCAAACTAACAGAGAAGCCGGCATGTCTCTCGATATACCACTTACCTCTGTTGAGAACCCGAAGCCCCAATCGGGAAATATGGAAGTAGAAGAGCCAGATCCGGAGTACGAGTCAGATGGATCAGATTCAGATGAAGAAATGATACCACCTTGTGAAGTTTGTCTGAAGGAGAATCCGGATCACTTTTCAAATGGTTGCCCGTACCTGGAGCGTGTCCCAAATCCAAAGGACACAGCTGTTGGCAAGGCCTTTATGATAGTCTGCATCCACTGCTTTCTGGAGAATCATGGCCACCCTGATGGAGCCTGGCAAGGATGTGCAATGCTAGATCCGAGGTTCTTTTATGATCGAGAGCCTGCAGATGACGAGCCTCCCCTTAAAGATGAGAGTGAATACTTTGCTTGGCTTAAGATCGACGGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

17.19

Weight (kDa)

4.14

Isoelectric Point (pI)

34.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 29
AccIII TCCGGA 2 cut(s) 139, 214
AclWI GGATC 4 cut(s) 131, 166, 225, 362
AcoI YGGCCR 1 cut(s) 328
AcuI CTGAAG 1 cut(s) 224
AdeI CACNNNGTG 1 cut(s) 191
AfaI GTAC 2 cut(s) 146, 242
AfiI CCNNNNNNNGG 2 cut(s) 110, 244
AflII CTTAAG 1 cut(s) 446
AgsI TTSAA 1 cut(s) 228
AjnI CCWGG 2 cut(s) 243, 344
AluBI AGCT 1 cut(s) 275
AluI AGCT 1 cut(s) 275
Alw26I GTCTC 2 cut(s) 9, 69
AlwI GGATC 4 cut(s) 131, 166, 225, 362
Aor13HI TCCGGA 2 cut(s) 139, 214
AoxI GGCC 2 cut(s) 285, 328
BalI TGGCCA 1 cut(s) 330
BanI GGYRCC 1 cut(s) 29
BarI GAAGNNNNNNTAC 2 cut(s) 165, 197
BccI CCATC 2 cut(s) 149, 332
BcgI CGANNNNNNTGC 2 cut(s) 49, 83
BciT130I CCWGG 2 cut(s) 245, 346
BcoDI GTCTC 2 cut(s) 9, 69
BfaI CTAG 1 cut(s) 365
BfmI CTRYAG 1 cut(s) 396
BfrI CTTAAG 1 cut(s) 446
Bme1390I CCNGG 2 cut(s) 245, 346
BmiI GGNNCC 2 cut(s) 31, 343
BmrFI CCNGG 2 cut(s) 245, 346
BmsI GCATC 1 cut(s) 312
BpmI CTGGAG 2 cut(s) 266, 338
BsaJI CCNNGG 1 cut(s) 371
BsaWI WCCGGW 3 cut(s) 26, 139, 214
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 244
Bse118I RCCGGY 1 cut(s) 56
Bse3DI GCAATG 1 cut(s) 366
BseAI TCCGGA 2 cut(s) 139, 214
BseBI CCWGG 2 cut(s) 245, 346
BseDI CCNNGG 1 cut(s) 371
BseGI GGATG 2 cut(s) 303, 359
BseLI CCNNNNNNNGG 2 cut(s) 110, 244
BseMI GCAATG 1 cut(s) 366
BshFI GGCC 2 cut(s) 287, 330
BshNI GGYRCC 1 cut(s) 29
BsiSI CCGG 4 cut(s) 27, 57, 140, 215
BslFI GGGAC 1 cut(s) 239
BslI CCNNNNNNNGG 2 cut(s) 110, 244
BsmAI GTCTC 2 cut(s) 9, 69
BsmFI GGGAC 1 cut(s) 239
BsnI GGCC 2 cut(s) 287, 330
Bsp13I TCCGGA 2 cut(s) 139, 214
Bsp143I GATC 6 cut(s) 136, 158, 217, 367, 385, 450
BspANI GGCC 2 cut(s) 287, 330
BspEI TCCGGA 2 cut(s) 139, 214
BspLI GGNNCC 2 cut(s) 31, 343
BspMAI CTGCAG 1 cut(s) 400
BspPI GGATC 4 cut(s) 131, 166, 225, 362
BspQI GCTCTTC 1 cut(s) 123
BspT107I GGYRCC 1 cut(s) 29
BspTI CTTAAG 1 cut(s) 446
BsrDI GCAATG 1 cut(s) 366
BsrFI RCCGGY 1 cut(s) 56
BssAI RCCGGY 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 371
BssMI GATC 6 cut(s) 136, 158, 217, 367, 385, 450
Bst2UI CCWGG 2 cut(s) 245, 346
Bst4CI ACNGT 1 cut(s) 458
Bst6I CTCTTC 1 cut(s) 123
BstAFI CTTAAG 1 cut(s) 446
BstAPI GCANNNNNTGC 1 cut(s) 309
BstC8I GCNNGC 2 cut(s) 58, 396
BstF5I GGATG 2 cut(s) 303, 359
BstKTI GATC 6 cut(s) 139, 161, 220, 370, 388, 453
BstMAI GTCTC 2 cut(s) 9, 69
BstMBI GATC 6 cut(s) 136, 158, 217, 367, 385, 450
BstMWI GCNNNNNNNGC 1 cut(s) 309
BstNI CCWGG 2 cut(s) 245, 346
BstNSI RCATGY 1 cut(s) 64
BstSCI CCNGG 2 cut(s) 243, 344
BstSFI CTRYAG 1 cut(s) 396
BstX2I RGATCY 2 cut(s) 136, 367
BstXI CCANNNNNNTGG 1 cut(s) 338
BstYI RGATCY 2 cut(s) 136, 367
BsuRI GGCC 2 cut(s) 287, 330
BtsCI GGATG 2 cut(s) 303, 359
BtsI GCAGTG 1 cut(s) 307
BtsIMutI CAGTG 1 cut(s) 307
Cac8I GCNNGC 2 cut(s) 58, 396
Cfr10I RCCGGY 1 cut(s) 56
Csp6I GTAC 2 cut(s) 145, 241
CviAII CATG 2 cut(s) 61, 326
CviQI GTAC 2 cut(s) 145, 241
DpnI GATC 6 cut(s) 138, 160, 219, 369, 387, 452
DpnII GATC 6 cut(s) 136, 158, 217, 367, 385, 450
DraIII CACNNNGTG 1 cut(s) 191
EaeI YGGCCR 1 cut(s) 328
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
Eco147I AGGCCT 1 cut(s) 287
Eco57I CTGAAG 1 cut(s) 224
EcoRII CCWGG 2 cut(s) 243, 344
FaeI CATG 2 cut(s) 64, 329
FaiI YATR 6 cut(s) 62, 74, 119, 293, 327, 384
FaqI GGGAC 1 cut(s) 239
FatI CATG 2 cut(s) 60, 325
FokI GGATG 2 cut(s) 290, 366
FspBI CTAG 1 cut(s) 365
GsuI CTGGAG 2 cut(s) 266, 338
HaeIII GGCC 2 cut(s) 287, 330
HapII CCGG 4 cut(s) 27, 57, 140, 215
Hin1II CATG 2 cut(s) 64, 329
HinfI GANTC 5 cut(s) 35, 149, 164, 211, 322
HpaII CCGG 4 cut(s) 27, 57, 140, 215
Hpy188I TCNGA 5 cut(s) 154, 163, 169, 204, 372
Hpy188III TCNNGA 7 cut(s) 8, 68, 111, 140, 215, 317, 389
Hpy99I CGWCG 1 cut(s) 458
HpyAV CCTTC 1 cut(s) 199
HpyCH4III ACNGT 1 cut(s) 458
HpyCH4V TGCA 3 cut(s) 303, 359, 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 309
Hsp92II CATG 2 cut(s) 64, 329
Kpn2I TCCGGA 2 cut(s) 139, 214
KroI GCCGGC 1 cut(s) 56
KroNI GCCGGC 1 cut(s) 58
Kzo9I GATC 6 cut(s) 136, 158, 217, 367, 385, 450
LguI GCTCTTC 1 cut(s) 123
LmnI GCTCC 2 cut(s) 247, 341
LweI GCATC 1 cut(s) 312
MaeI CTAG 1 cut(s) 365
MalI GATC 6 cut(s) 138, 160, 219, 369, 387, 452
MboI GATC 6 cut(s) 136, 158, 217, 367, 385, 450
MboII GAAGA 2 cut(s) 140, 185
MflI RGATCY 2 cut(s) 136, 367
MlsI TGGCCA 1 cut(s) 330
MluNI TGGCCA 1 cut(s) 330
MlyI GAGTC 2 cut(s) 29, 158
MnlI CCTC 3 cut(s) 94, 366, 420
Mox20I TGGCCA 1 cut(s) 330
MroI TCCGGA 2 cut(s) 139, 214
MroNI GCCGGC 1 cut(s) 56
MscI TGGCCA 1 cut(s) 330
MseI TTAA 2 cut(s) 417, 447
MslI CAYNNNNRTG 1 cut(s) 336
Msp20I TGGCCA 1 cut(s) 330
MspA1I CMGCKG 1 cut(s) 275
MspCI CTTAAG 1 cut(s) 446
MspI CCGG 4 cut(s) 27, 57, 140, 215
MspR9I CCNGG 2 cut(s) 245, 346
MvaI CCWGG 2 cut(s) 245, 346
MwoI GCNNNNNNNGC 1 cut(s) 309
NaeI GCCGGC 1 cut(s) 58
NdeII GATC 6 cut(s) 136, 158, 217, 367, 385, 450
NgoMIV GCCGGC 1 cut(s) 56
NlaIII CATG 2 cut(s) 64, 329
NlaIV GGNNCC 2 cut(s) 31, 343
NspI RCATGY 1 cut(s) 64
PceI AGGCCT 1 cut(s) 287
PciSI GCTCTTC 1 cut(s) 123
PdiI GCCGGC 1 cut(s) 58
PfeI GAWTC 3 cut(s) 164, 211, 322
PleI GAGTC 2 cut(s) 29, 157
PpsI GAGTC 2 cut(s) 29, 157
Psp6I CCWGG 2 cut(s) 243, 344
PspGI CCWGG 2 cut(s) 243, 344
PspN4I GGNNCC 2 cut(s) 31, 343
PstI CTGCAG 1 cut(s) 400
PsuI RGATCY 2 cut(s) 136, 367
PvuII CAGCTG 1 cut(s) 275
RsaI GTAC 2 cut(s) 146, 242
RsaNI GTAC 2 cut(s) 145, 241
RseI CAYNNNNRTG 1 cut(s) 336
SapI GCTCTTC 1 cut(s) 123
SaqAI TTAA 2 cut(s) 417, 447
Sau3AI GATC 6 cut(s) 136, 158, 217, 367, 385, 450
SchI GAGTC 2 cut(s) 29, 158
ScrFI CCNGG 2 cut(s) 245, 346
SetI ASST 5 cut(s) 86, 190, 246, 277, 377
SfaNI GCATC 1 cut(s) 312
SfcI CTRYAG 1 cut(s) 396
SmiMI CAYNNNNRTG 1 cut(s) 336
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
SseBI AGGCCT 1 cut(s) 287
SspMI CTAG 1 cut(s) 365
StuI AGGCCT 1 cut(s) 287
StyD4I CCNGG 2 cut(s) 243, 344
TaaI ACNGT 1 cut(s) 458
TaqI TCGA 4 cut(s) 9, 69, 388, 453
TfiI GAWTC 3 cut(s) 164, 211, 322
Tru1I TTAA 2 cut(s) 417, 447
Tru9I TTAA 2 cut(s) 417, 447
TscAI CASTG 1 cut(s) 314
TspDTI ATGAA 1 cut(s) 186
TspRI CASTG 1 cut(s) 314
Vha464I CTTAAG 1 cut(s) 446
XceI RCATGY 1 cut(s) 64
XspI CTAG 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.