Rroxscaffold_1G00042460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000181
Physical Location & Seq
Reverse (-)
60586328 .. 60588243
1916 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00042460.1

Sequence Viewer

Length: 585 bp
ATGTCTCTCGCGATCCCAGCCCAGACGCCCAACCTCAACCTCATAGATCAGGACGACAACATCCGCACTCATGGTACCGGCTCAAAAGACTCGAAGCTTGCTGGAATGTCTTTGACTCAACAATTTGACTACTTGTCGCTGGCTCTGCCTCTCCCTCATGAACAAGAAGAAGAATCAGCAAAGGAAGAAGAAGAAGAAGAAGAAGAGGAGGATGAAGAGGATGAAGAAGAGGGTGAAGAAGGAGAACAAGAGGATGAAGACGAGGAAGAAGAATTTGACGTTTGTGATGTTTGCCTGAAGGACAAGGAACACTGGACATTTGATTGCCCGTACCTGGATCGCATCCCGAACCCAATGACGACAACTGTTGGCAGTGGCTATGCAATAGTTTGTAGAGGATGTCATGCGTTGGGTGGCCATTCTGATAGGGCCTGGGTAGGACGTGCCGTTATGAAGTCTTGTGGTATTTGTGCGGTACCAGGTTCTCACTGGAGTTATGAATGCCCAAAAAACCCTGACCCCAGAAGGTATGACAATTCGAATAACCGTAAGGTGTTGATGCGAGAGGTCTATAGTGTCGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

21.92

Weight (kDa)

4.29

Isoelectric Point (pI)

65.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eIF3g PF12353 66 - 113 3.8e-06 Eukaryotic translation initiation factor 3 subunit G
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 74, 475
AccB1I GGYRCC 2 cut(s) 74, 475
AccII CGCG 1 cut(s) 11
AciI CCGC 2 cut(s) 64, 473
AclWI GGATC 2 cut(s) 7, 345
AcoI YGGCCR 1 cut(s) 415
AcsI RAATTY 1 cut(s) 272
AcuI CTGAAG 1 cut(s) 317
AcyI GRCGYC 1 cut(s) 26
AfaI GTAC 3 cut(s) 76, 332, 477
AfiI CCNNNNNNNGG 1 cut(s) 334
AhdI GACNNNNNGTC 1 cut(s) 133
AjiI CACGTC 1 cut(s) 443
AjnI CCWGG 3 cut(s) 333, 431, 478
AluBI AGCT 1 cut(s) 97
AluI AGCT 1 cut(s) 97
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 2 cut(s) 7, 345
AoxI GGCC 2 cut(s) 415, 429
ApoI RAATTY 1 cut(s) 272
Asp718I GGTACC 2 cut(s) 74, 475
AspS9I GGNCC 1 cut(s) 429
AsuHPI GGTGA 1 cut(s) 245
AsuII TTCGAA 1 cut(s) 539
BalI TGGCCA 1 cut(s) 417
BanI GGYRCC 2 cut(s) 74, 475
BbsI GAAGAC 1 cut(s) 264
BceAI ACGGC 1 cut(s) 431
BciT130I CCWGG 3 cut(s) 335, 433, 480
BcoDI GTCTC 1 cut(s) 9
BfmI CTRYAG 1 cut(s) 571
Bme1390I CCNGG 3 cut(s) 335, 433, 480
BmeRI GACNNNNNGTC 1 cut(s) 133
BmgBI CACGTC 1 cut(s) 443
BmgT120I GGNCC 1 cut(s) 429
BmiI GGNNCC 2 cut(s) 76, 477
BmrFI CCNGG 3 cut(s) 335, 433, 480
BmsI GCATC 2 cut(s) 351, 549
BpiI GAAGAC 1 cut(s) 264
BpmI CTGGAG 1 cut(s) 511
Bpu14I TTCGAA 1 cut(s) 539
BsaHI GRCGYC 1 cut(s) 26
BsaJI CCNNGG 1 cut(s) 432
Bsc4I CCNNNNNNNGG 1 cut(s) 334
Bse118I RCCGGY 1 cut(s) 77
Bse1I ACTGG 2 cut(s) 317, 494
BseBI CCWGG 3 cut(s) 335, 433, 480
BseDI CCNNGG 1 cut(s) 432
BseGI GGATG 6 cut(s) 60, 217, 226, 259, 342, 404
BseLI CCNNNNNNNGG 1 cut(s) 334
BseNI ACTGG 2 cut(s) 317, 494
BseRI GAGGAG 1 cut(s) 221
BseYI CCCAGC 1 cut(s) 16
Bsh1236I CGCG 1 cut(s) 11
BshFI GGCC 2 cut(s) 417, 431
BshNI GGYRCC 2 cut(s) 74, 475
BsiSI CCGG 1 cut(s) 78
BslI CCNNNNNNNGG 1 cut(s) 334
BsmAI GTCTC 1 cut(s) 9
BsmI GAATGC 1 cut(s) 506
BsnI GGCC 2 cut(s) 417, 431
Bsp119I TTCGAA 1 cut(s) 539
Bsp143I GATC 3 cut(s) 12, 46, 337
Bsp68I TCGCGA 1 cut(s) 11
BspACI CCGC 2 cut(s) 64, 473
BspANI GGCC 2 cut(s) 417, 431
BspFNI CGCG 1 cut(s) 11
BspHI TCATGA 1 cut(s) 157
BspLI GGNNCC 2 cut(s) 76, 477
BspPI GGATC 2 cut(s) 7, 345
BspT104I TTCGAA 1 cut(s) 539
BspT107I GGYRCC 2 cut(s) 74, 475
BsrFI RCCGGY 1 cut(s) 77
BsrI ACTGG 2 cut(s) 317, 494
BssAI RCCGGY 1 cut(s) 77
BssECI CCNNGG 1 cut(s) 432
BssMI GATC 3 cut(s) 12, 46, 337
BssNI GRCGYC 1 cut(s) 26
Bst2UI CCWGG 3 cut(s) 335, 433, 480
Bst4CI ACNGT 2 cut(s) 367, 548
Bst6I CTCTTC 3 cut(s) 198, 210, 222
BstACI GRCGYC 1 cut(s) 26
BstBI TTCGAA 1 cut(s) 539
BstC8I GCNNGC 2 cut(s) 99, 141
BstF5I GGATG 6 cut(s) 60, 217, 226, 259, 342, 404
BstFNI CGCG 1 cut(s) 11
BstKTI GATC 3 cut(s) 15, 49, 340
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 3 cut(s) 12, 46, 337
BstMWI GCNNNNNNNGC 2 cut(s) 17, 145
BstNI CCWGG 3 cut(s) 335, 433, 480
BstSCI CCNGG 3 cut(s) 333, 431, 478
BstSFI CTRYAG 1 cut(s) 571
BstUI CGCG 1 cut(s) 11
BstV2I GAAGAC 1 cut(s) 264
BsuRI GGCC 2 cut(s) 417, 431
BtrI CACGTC 1 cut(s) 443
BtsCI GGATG 6 cut(s) 60, 217, 226, 259, 342, 404
BtsI GCAGTG 1 cut(s) 379
BtsIMutI CAGTG 3 cut(s) 310, 379, 487
BtuMI TCGCGA 1 cut(s) 11
Cac8I GCNNGC 2 cut(s) 99, 141
CciI TCATGA 1 cut(s) 157
Cfr10I RCCGGY 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 429
CseI GACGC 1 cut(s) 34
CsiI ACCWGGT 1 cut(s) 478
Csp6I GTAC 3 cut(s) 75, 331, 476
CviAII CATG 4 cut(s) 71, 158, 404, 582
CviJI RGCY 7 cut(s) 20, 81, 97, 143, 378, 417, 431
CviKI_1 RGCY 7 cut(s) 20, 81, 97, 143, 378, 417, 431
CviQI GTAC 3 cut(s) 75, 331, 476
DpnI GATC 3 cut(s) 14, 48, 339
DpnII GATC 3 cut(s) 12, 46, 337
DriI GACNNNNNGTC 1 cut(s) 133
EaeI YGGCCR 1 cut(s) 415
Eam1104I CTCTTC 3 cut(s) 198, 210, 222
Eam1105I GACNNNNNGTC 1 cut(s) 133
EarI CTCTTC 3 cut(s) 198, 210, 222
Eco57I CTGAAG 1 cut(s) 317
EcoO109I RGGNCCY 1 cut(s) 429
EcoRII CCWGG 3 cut(s) 333, 431, 478
FaeI CATG 4 cut(s) 74, 161, 407, 585
FatI CATG 4 cut(s) 70, 157, 403, 581
FokI GGATG 6 cut(s) 47, 224, 233, 266, 329, 411
GsaI CCCAGC 1 cut(s) 20
GsuI CTGGAG 1 cut(s) 511
HaeIII GGCC 2 cut(s) 417, 431
HapII CCGG 1 cut(s) 78
HgaI GACGC 1 cut(s) 34
Hin1I GRCGYC 1 cut(s) 26
Hin1II CATG 4 cut(s) 74, 161, 407, 585
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 3 cut(s) 89, 115, 173
HpaII CCGG 1 cut(s) 78
HphI GGTGA 1 cut(s) 245
Hpy188I TCNGA 1 cut(s) 424
Hpy188III TCNNGA 4 cut(s) 10, 50, 158, 346
HpyAV CCTTC 3 cut(s) 233, 292, 519
HpyCH4III ACNGT 2 cut(s) 367, 548
HpyCH4IV ACGT 2 cut(s) 279, 442
HpyCH4V TGCA 1 cut(s) 383
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 145
HpySE526I ACGT 2 cut(s) 279, 442
Hsp92I GRCGYC 1 cut(s) 26
Hsp92II CATG 4 cut(s) 74, 161, 407, 585
KpnI GGTACC 2 cut(s) 78, 479
Kzo9I GATC 3 cut(s) 12, 46, 337
LweI GCATC 2 cut(s) 351, 549
MabI ACCWGGT 1 cut(s) 478
MaeII ACGT 2 cut(s) 279, 442
MalI GATC 3 cut(s) 14, 48, 339
MboI GATC 3 cut(s) 12, 46, 337
MlsI TGGCCA 1 cut(s) 417
MluCI AATT 3 cut(s) 122, 272, 535
MluNI TGGCCA 1 cut(s) 417
MlyI GAGTC 2 cut(s) 83, 109
Mox20I TGGCCA 1 cut(s) 417
MscI TGGCCA 1 cut(s) 417
Msp20I TGGCCA 1 cut(s) 417
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 3 cut(s) 335, 433, 480
Mva1269I GAATGC 1 cut(s) 506
MvaI CCWGG 3 cut(s) 335, 433, 480
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 2 cut(s) 17, 145
NdeII GATC 3 cut(s) 12, 46, 337
NlaIII CATG 4 cut(s) 74, 161, 407, 585
NlaIV GGNNCC 2 cut(s) 76, 477
NruI TCGCGA 1 cut(s) 11
NspV TTCGAA 1 cut(s) 539
PagI TCATGA 1 cut(s) 157
PctI GAATGC 1 cut(s) 506
PfeI GAWTC 1 cut(s) 173
PleI GAGTC 2 cut(s) 83, 109
PpsI GAGTC 2 cut(s) 83, 109
Psp6I CCWGG 3 cut(s) 333, 431, 478
PspFI CCCAGC 1 cut(s) 16
PspGI CCWGG 3 cut(s) 333, 431, 478
PspN4I GGNNCC 2 cut(s) 76, 477
PspPI GGNCC 1 cut(s) 429
RruI TCGCGA 1 cut(s) 11
RsaI GTAC 3 cut(s) 76, 332, 477
RsaNI GTAC 3 cut(s) 75, 331, 476
Sau3AI GATC 3 cut(s) 12, 46, 337
Sau96I GGNCC 1 cut(s) 429
SchI GAGTC 2 cut(s) 83, 109
ScrFI CCNGG 3 cut(s) 335, 433, 480
SexAI ACCWGGT 1 cut(s) 478
SfaNI GCATC 2 cut(s) 351, 549
SfcI CTRYAG 1 cut(s) 571
SfuI TTCGAA 1 cut(s) 539
Sse9I AATT 3 cut(s) 122, 272, 535
SsiI CCGC 2 cut(s) 64, 473
StyD4I CCNGG 3 cut(s) 333, 431, 478
TaaI ACNGT 2 cut(s) 367, 548
TaiI ACGT 2 cut(s) 282, 445
TaqI TCGA 2 cut(s) 92, 539
TasI AATT 3 cut(s) 122, 272, 535
TfiI GAWTC 1 cut(s) 173
TscAI CASTG 3 cut(s) 317, 379, 494
TspDTI ATGAA 6 cut(s) 174, 228, 237, 270, 467, 513
TspRI CASTG 3 cut(s) 317, 379, 494
XapI RAATTY 1 cut(s) 272
XcmI CCANNNNNNNNNTGG 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.