Rroxscaffold_1G00042450

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000181
Physical Location & Seq
Reverse (-)
60577954 .. 60579723
1770 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00042450.1

Sequence Viewer

Length: 576 bp
ATGTCTCCGGCGATCCCAGCCCAGCCACCCAACCTCAACCTCACAGATCAGGACGACAACATCCGCACTCATGAGCCACAGACAGGTACCGGCTCAAAAGACTCGAAGCTTGCTGGAATGTCTTTGACTCAACAATTTGACTACTTGTCGCTGGCTCTGCCTCTCCCTCATGAACAAGAAGAAGAATCAGCAAAAGGGGAAGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAGGATGAAGACGAGGAAGAAGTATTTGACGTTTGTCGTGTTTGCTTGAAGGACAAGGAACACTGGACATTTGATTGCCCGTACCTGGATCGCATCCAGAACCCGAAGACGACAACTGTTGGCAGTGGCTATGCAATAGTTTGTAGAGGATGTCATGTGTTGAGTGGCCATGGTGATAGGGCCTGGGTAGGACGTGCCATTATGAAGTATTGTAGTATTTGTGAGGTACCAGCTTCTCACTGGAATTACGAATGCCCAAAAAACCCCGACCCCAGAAAGTATGATTATTCGAAAAATCGCAAGGTGTTGAAGCAAGAGGTCTTTAGTGTCGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

21.81

Weight (kDa)

4.53

Isoelectric Point (pI)

70.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eIF3g PF12353 64 - 110 4.1e-08 Eukaryotic translation initiation factor 3 subunit G
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 86, 466
AccB1I GGYRCC 2 cut(s) 86, 466
AciI CCGC 1 cut(s) 64
AclWI GGATC 2 cut(s) 7, 336
AcoI YGGCCR 1 cut(s) 406
AfaI GTAC 3 cut(s) 88, 323, 468
AfiI CCNNNNNNNGG 2 cut(s) 83, 325
AgsI TTSAA 2 cut(s) 289, 550
AhdI GACNNNNNGTC 1 cut(s) 145
AjiI CACGTC 1 cut(s) 434
AjnI CCWGG 2 cut(s) 324, 422
AluBI AGCT 2 cut(s) 109, 473
AluI AGCT 2 cut(s) 109, 473
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 2 cut(s) 7, 336
AoxI GGCC 2 cut(s) 406, 420
Asp718I GGTACC 2 cut(s) 86, 466
AspS9I GGNCC 1 cut(s) 420
AsuHPI GGTGA 1 cut(s) 425
AsuII TTCGAA 1 cut(s) 530
BalI TGGCCA 1 cut(s) 408
BanI GGYRCC 2 cut(s) 86, 466
BbsI GAAGAC 2 cut(s) 255, 353
BciT130I CCWGG 2 cut(s) 326, 424
BcoDI GTCTC 1 cut(s) 9
Bme1390I CCNGG 2 cut(s) 326, 424
BmeRI GACNNNNNGTC 1 cut(s) 145
BmgBI CACGTC 1 cut(s) 434
BmgT120I GGNCC 1 cut(s) 420
BmiI GGNNCC 2 cut(s) 88, 468
BmrFI CCNGG 2 cut(s) 326, 424
BmsI GCATC 1 cut(s) 342
BoxI GACNNNNGTC 1 cut(s) 273
BpiI GAAGAC 2 cut(s) 255, 353
Bpu14I TTCGAA 1 cut(s) 530
BsaJI CCNNGG 2 cut(s) 409, 423
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 325
Bse118I RCCGGY 1 cut(s) 89
Bse1I ACTGG 2 cut(s) 308, 485
BseBI CCWGG 2 cut(s) 326, 424
BseDI CCNNGG 2 cut(s) 409, 423
BseGI GGATG 4 cut(s) 60, 250, 333, 395
BseLI CCNNNNNNNGG 2 cut(s) 83, 325
BseNI ACTGG 2 cut(s) 308, 485
BseRI GAGGAG 6 cut(s) 218, 221, 224, 227, 230, 233
BseYI CCCAGC 2 cut(s) 16, 21
BshFI GGCC 2 cut(s) 408, 422
BshNI GGYRCC 2 cut(s) 86, 466
BsiSI CCGG 2 cut(s) 8, 90
BslI CCNNNNNNNGG 2 cut(s) 83, 325
BsmAI GTCTC 1 cut(s) 9
BsmI GAATGC 1 cut(s) 497
BsnI GGCC 2 cut(s) 408, 422
Bsp119I TTCGAA 1 cut(s) 530
Bsp143I GATC 3 cut(s) 12, 46, 328
Bsp19I CCATGG 1 cut(s) 409
BspACI CCGC 1 cut(s) 64
BspANI GGCC 2 cut(s) 408, 422
BspHI TCATGA 2 cut(s) 70, 169
BspLI GGNNCC 2 cut(s) 88, 468
BspPI GGATC 2 cut(s) 7, 336
BspT104I TTCGAA 1 cut(s) 530
BspT107I GGYRCC 2 cut(s) 86, 466
BsrFI RCCGGY 1 cut(s) 89
BsrI ACTGG 2 cut(s) 308, 485
BssAI RCCGGY 1 cut(s) 89
BssECI CCNNGG 2 cut(s) 409, 423
BssMI GATC 3 cut(s) 12, 46, 328
BssT1I CCWWGG 1 cut(s) 409
Bst2UI CCWGG 2 cut(s) 326, 424
Bst4CI ACNGT 1 cut(s) 358
Bst6I CTCTTC 2 cut(s) 195, 234
BstBI TTCGAA 1 cut(s) 530
BstC8I GCNNGC 2 cut(s) 111, 153
BstDSI CCRYGG 1 cut(s) 409
BstF5I GGATG 4 cut(s) 60, 250, 333, 395
BstKTI GATC 3 cut(s) 15, 49, 331
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 3 cut(s) 12, 46, 328
BstMWI GCNNNNNNNGC 2 cut(s) 17, 157
BstNI CCWGG 2 cut(s) 326, 424
BstPAI GACNNNNGTC 1 cut(s) 273
BstSCI CCNGG 2 cut(s) 324, 422
BstV2I GAAGAC 2 cut(s) 255, 353
BsuRI GGCC 2 cut(s) 408, 422
BtgI CCRYGG 1 cut(s) 409
BtrI CACGTC 1 cut(s) 434
BtsCI GGATG 4 cut(s) 60, 250, 333, 395
BtsI GCAGTG 1 cut(s) 370
BtsIMutI CAGTG 3 cut(s) 301, 370, 478
Cac8I GCNNGC 2 cut(s) 111, 153
CciI TCATGA 2 cut(s) 70, 169
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 1 cut(s) 420
Csp6I GTAC 3 cut(s) 87, 322, 467
CviAII CATG 5 cut(s) 71, 170, 395, 410, 573
CviQI GTAC 3 cut(s) 87, 322, 467
DpnI GATC 3 cut(s) 14, 48, 330
DpnII GATC 3 cut(s) 12, 46, 328
DriI GACNNNNNGTC 1 cut(s) 145
EaeI YGGCCR 1 cut(s) 406
Eam1104I CTCTTC 2 cut(s) 195, 234
Eam1105I GACNNNNNGTC 1 cut(s) 145
EarI CTCTTC 2 cut(s) 195, 234
Eco130I CCWWGG 1 cut(s) 409
EcoO109I RGGNCCY 1 cut(s) 420
EcoRII CCWGG 2 cut(s) 324, 422
EcoT14I CCWWGG 1 cut(s) 409
ErhI CCWWGG 1 cut(s) 409
FaeI CATG 5 cut(s) 74, 173, 398, 413, 576
FaiI YATR 8 cut(s) 72, 171, 372, 396, 411, 443, 522, 574
FatI CATG 5 cut(s) 70, 169, 394, 409, 572
FokI GGATG 4 cut(s) 47, 257, 320, 402
GsaI CCCAGC 2 cut(s) 20, 25
HaeIII GGCC 2 cut(s) 408, 422
HapII CCGG 2 cut(s) 8, 90
Hin1II CATG 5 cut(s) 74, 173, 398, 413, 576
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 3 cut(s) 101, 127, 185
HpaII CCGG 2 cut(s) 8, 90
HphI GGTGA 1 cut(s) 425
Hpy188III TCNNGA 4 cut(s) 50, 71, 170, 337
HpyAV CCTTC 1 cut(s) 283
HpyCH4III ACNGT 1 cut(s) 358
HpyCH4IV ACGT 2 cut(s) 270, 433
HpyCH4V TGCA 1 cut(s) 374
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 157
HpySE526I ACGT 2 cut(s) 270, 433
Hsp92II CATG 5 cut(s) 74, 173, 398, 413, 576
KpnI GGTACC 2 cut(s) 90, 470
Kzo9I GATC 3 cut(s) 12, 46, 328
LweI GCATC 1 cut(s) 342
MaeII ACGT 2 cut(s) 270, 433
MalI GATC 3 cut(s) 14, 48, 330
MboI GATC 3 cut(s) 12, 46, 328
MlsI TGGCCA 1 cut(s) 408
MluCI AATT 2 cut(s) 134, 484
MluNI TGGCCA 1 cut(s) 408
MlyI GAGTC 2 cut(s) 95, 121
Mox20I TGGCCA 1 cut(s) 408
MscI TGGCCA 1 cut(s) 408
Msp20I TGGCCA 1 cut(s) 408
MspI CCGG 2 cut(s) 8, 90
MspR9I CCNGG 2 cut(s) 326, 424
Mva1269I GAATGC 1 cut(s) 497
MvaI CCWGG 2 cut(s) 326, 424
MwoI GCNNNNNNNGC 2 cut(s) 17, 157
NcoI CCATGG 1 cut(s) 409
NdeII GATC 3 cut(s) 12, 46, 328
NlaIII CATG 5 cut(s) 74, 173, 398, 413, 576
NlaIV GGNNCC 2 cut(s) 88, 468
NspV TTCGAA 1 cut(s) 530
PagI TCATGA 2 cut(s) 70, 169
PctI GAATGC 1 cut(s) 497
PfeI GAWTC 1 cut(s) 185
PleI GAGTC 2 cut(s) 95, 121
PpsI GAGTC 2 cut(s) 95, 121
PshAI GACNNNNGTC 1 cut(s) 273
Psp6I CCWGG 2 cut(s) 324, 422
PspFI CCCAGC 2 cut(s) 16, 21
PspGI CCWGG 2 cut(s) 324, 422
PspN4I GGNNCC 2 cut(s) 88, 468
PspPI GGNCC 1 cut(s) 420
RsaI GTAC 3 cut(s) 88, 323, 468
RsaNI GTAC 3 cut(s) 87, 322, 467
Sau3AI GATC 3 cut(s) 12, 46, 328
Sau96I GGNCC 1 cut(s) 420
SchI GAGTC 2 cut(s) 95, 121
ScrFI CCNGG 2 cut(s) 326, 424
SfaNI GCATC 1 cut(s) 342
SfuI TTCGAA 1 cut(s) 530
Sse9I AATT 2 cut(s) 134, 484
SsiI CCGC 1 cut(s) 64
StyD4I CCNGG 2 cut(s) 324, 422
StyI CCWWGG 1 cut(s) 409
TaaI ACNGT 1 cut(s) 358
TaiI ACGT 2 cut(s) 273, 436
TaqI TCGA 2 cut(s) 104, 530
TasI AATT 2 cut(s) 134, 484
TfiI GAWTC 1 cut(s) 185
TscAI CASTG 3 cut(s) 308, 370, 485
TspDTI ATGAA 3 cut(s) 186, 261, 458
TspRI CASTG 3 cut(s) 308, 370, 485
XcmI CCANNNNNNNNNTGG 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.