FvH4_6g19630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000181
Physical Location & Seq
Reverse (-)
13129103 .. 13129462
360 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g19630.t1

Sequence Viewer

Length: 360 bp
ATGGAAGTAGAAGAGCCAGATCCGGAGTACGAGTCAGATGGATCAGATGAAGATATGATACCACCTTGTGAATGTTGTCTGAAGGAGAATCCGGATCACTTTTCAAATGGTTGCCCGTACCTGGAGCGTGTCCCAAATCCAAAGGACACAGCTGTTGGCAAGGCCTTTATGATAGTTTGCATCCACTGCTTTCTAGAGAATCATGGCCACCCTGATGGAGCCTGGCAAGGATGTGCAATGCTAGATCCGAGGTTCTTTTTTGATAAAGAGCCGCCTGCAGATGACGAGCCTCCCCTTAAAGATGAGAGTGAATACTTTGCTTGGCTTAAGGTGGGTGTTTCTCGTTTCTCTCGTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.54

Weight (kDa)

4.34

Isoelectric Point (pI)

29.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 22, 91
AciI CCGC 1 cut(s) 272
AclWI GGATC 4 cut(s) 14, 49, 102, 239
AcoI YGGCCR 1 cut(s) 205
AcuI CTGAAG 1 cut(s) 101
AdeI CACNNNGTG 1 cut(s) 68
AfaI GTAC 2 cut(s) 29, 119
AfiI CCNNNNNNNGG 1 cut(s) 121
AflII CTTAAG 1 cut(s) 326
AgsI TTSAA 1 cut(s) 105
AjnI CCWGG 2 cut(s) 120, 221
AluBI AGCT 1 cut(s) 152
AluI AGCT 1 cut(s) 152
AlwI GGATC 4 cut(s) 14, 49, 102, 239
Aor13HI TCCGGA 2 cut(s) 22, 91
AoxI GGCC 2 cut(s) 162, 205
BalI TGGCCA 1 cut(s) 207
BarI GAAGNNNNNNTAC 2 cut(s) 42, 74
BauI CACGAG 1 cut(s) 351
BccI CCATC 2 cut(s) 32, 209
BciT130I CCWGG 2 cut(s) 122, 223
BfaI CTAG 2 cut(s) 194, 242
BfmI CTRYAG 1 cut(s) 276
BfrI CTTAAG 1 cut(s) 326
BisI GCNGC 1 cut(s) 272
BlsI GCNGC 1 cut(s) 273
Bme1390I CCNGG 2 cut(s) 122, 223
BmiI GGNNCC 1 cut(s) 220
BmrFI CCNGG 2 cut(s) 122, 223
BmsI GCATC 1 cut(s) 189
BpmI CTGGAG 1 cut(s) 143
BsaJI CCNNGG 1 cut(s) 248
BsaWI WCCGGW 2 cut(s) 22, 91
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 1 cut(s) 121
Bse3DI GCAATG 1 cut(s) 243
BseAI TCCGGA 2 cut(s) 22, 91
BseBI CCWGG 2 cut(s) 122, 223
BseDI CCNNGG 1 cut(s) 248
BseGI GGATG 2 cut(s) 180, 236
BseLI CCNNNNNNNGG 1 cut(s) 121
BseMI GCAATG 1 cut(s) 243
BshFI GGCC 2 cut(s) 164, 207
BsiSI CCGG 2 cut(s) 23, 92
BslFI GGGAC 1 cut(s) 116
BslI CCNNNNNNNGG 1 cut(s) 121
BsmFI GGGAC 1 cut(s) 116
BsnI GGCC 2 cut(s) 164, 207
Bsp13I TCCGGA 2 cut(s) 22, 91
Bsp143I GATC 4 cut(s) 19, 41, 94, 244
BspACI CCGC 1 cut(s) 272
BspANI GGCC 2 cut(s) 164, 207
BspEI TCCGGA 2 cut(s) 22, 91
BspLI GGNNCC 1 cut(s) 220
BspMAI CTGCAG 1 cut(s) 280
BspPI GGATC 4 cut(s) 14, 49, 102, 239
BspQI GCTCTTC 1 cut(s) 6
BspTI CTTAAG 1 cut(s) 326
BsrDI GCAATG 1 cut(s) 243
BssECI CCNNGG 1 cut(s) 248
BssMI GATC 4 cut(s) 19, 41, 94, 244
BssSI CACGAG 1 cut(s) 351
Bst2BI CACGAG 1 cut(s) 351
Bst2UI CCWGG 2 cut(s) 122, 223
Bst6I CTCTTC 1 cut(s) 6
BstAFI CTTAAG 1 cut(s) 326
BstAPI GCANNNNNTGC 1 cut(s) 186
BstC8I GCNNGC 1 cut(s) 276
BstF5I GGATG 2 cut(s) 180, 236
BstKTI GATC 4 cut(s) 22, 44, 97, 247
BstMBI GATC 4 cut(s) 19, 41, 94, 244
BstMWI GCNNNNNNNGC 1 cut(s) 186
BstNI CCWGG 2 cut(s) 122, 223
BstSCI CCNGG 2 cut(s) 120, 221
BstSFI CTRYAG 1 cut(s) 276
BstX2I RGATCY 2 cut(s) 19, 244
BstXI CCANNNNNNTGG 1 cut(s) 215
BstYI RGATCY 2 cut(s) 19, 244
BsuRI GGCC 2 cut(s) 164, 207
BtsCI GGATG 2 cut(s) 180, 236
BtsI GCAGTG 1 cut(s) 184
BtsIMutI CAGTG 1 cut(s) 184
Cac8I GCNNGC 1 cut(s) 276
Csp6I GTAC 2 cut(s) 28, 118
CviAII CATG 1 cut(s) 203
CviJI RGCY 8 cut(s) 16, 152, 164, 207, 221, 271, 289, 325
CviKI_1 RGCY 8 cut(s) 16, 152, 164, 207, 221, 271, 289, 325
CviQI GTAC 2 cut(s) 28, 118
DpnI GATC 4 cut(s) 21, 43, 96, 246
DpnII GATC 4 cut(s) 19, 41, 94, 244
DraIII CACNNNGTG 1 cut(s) 68
EaeI YGGCCR 1 cut(s) 205
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
Eco147I AGGCCT 1 cut(s) 164
Eco57I CTGAAG 1 cut(s) 101
EcoRII CCWGG 2 cut(s) 120, 221
FaeI CATG 1 cut(s) 206
FaiI YATR 3 cut(s) 56, 170, 204
FaqI GGGAC 1 cut(s) 116
FatI CATG 1 cut(s) 202
Fnu4HI GCNGC 1 cut(s) 272
FokI GGATG 2 cut(s) 167, 243
Fsp4HI GCNGC 1 cut(s) 272
FspBI CTAG 2 cut(s) 194, 242
GluI GCNGC 1 cut(s) 272
GsuI CTGGAG 1 cut(s) 143
HaeIII GGCC 2 cut(s) 164, 207
HapII CCGG 2 cut(s) 23, 92
Hin1II CATG 1 cut(s) 206
HinfI GANTC 3 cut(s) 32, 88, 199
HpaII CCGG 2 cut(s) 23, 92
Hpy188I TCNGA 4 cut(s) 37, 46, 81, 249
Hpy188III TCNNGA 3 cut(s) 23, 92, 194
HpyAV CCTTC 1 cut(s) 76
HpyCH4V TGCA 3 cut(s) 180, 236, 278
HpyF10VI GCNNNNNNNGC 1 cut(s) 186
Hsp92II CATG 1 cut(s) 206
Kpn2I TCCGGA 2 cut(s) 22, 91
Kzo9I GATC 4 cut(s) 19, 41, 94, 244
LguI GCTCTTC 1 cut(s) 6
LmnI GCTCC 2 cut(s) 124, 218
LpnPI CCDG 9 cut(s) 30, 36, 105, 107, 134, 208, 225, 235, 288
LweI GCATC 1 cut(s) 189
MaeI CTAG 2 cut(s) 194, 242
MalI GATC 4 cut(s) 21, 43, 96, 246
MboI GATC 4 cut(s) 19, 41, 94, 244
MboII GAAGA 2 cut(s) 23, 62
MflI RGATCY 2 cut(s) 19, 244
MlsI TGGCCA 1 cut(s) 207
MluNI TGGCCA 1 cut(s) 207
MlyI GAGTC 1 cut(s) 41
MnlI CCTC 2 cut(s) 243, 300
Mox20I TGGCCA 1 cut(s) 207
MroI TCCGGA 2 cut(s) 22, 91
MscI TGGCCA 1 cut(s) 207
MseI TTAA 2 cut(s) 297, 327
MslI CAYNNNNRTG 1 cut(s) 213
Msp20I TGGCCA 1 cut(s) 207
MspA1I CMGCKG 1 cut(s) 152
MspCI CTTAAG 1 cut(s) 326
MspI CCGG 2 cut(s) 23, 92
MspR9I CCNGG 2 cut(s) 122, 223
MvaI CCWGG 2 cut(s) 122, 223
MwoI GCNNNNNNNGC 1 cut(s) 186
NdeII GATC 4 cut(s) 19, 41, 94, 244
NlaIII CATG 1 cut(s) 206
NlaIV GGNNCC 1 cut(s) 220
PceI AGGCCT 1 cut(s) 164
PciSI GCTCTTC 1 cut(s) 6
PcsI WCGNNNNNNNCGW 1 cut(s) 349
PfeI GAWTC 2 cut(s) 88, 199
PkrI GCNGC 1 cut(s) 273
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
Psp6I CCWGG 2 cut(s) 120, 221
PspGI CCWGG 2 cut(s) 120, 221
PspN4I GGNNCC 1 cut(s) 220
PstI CTGCAG 1 cut(s) 280
PsuI RGATCY 2 cut(s) 19, 244
PvuII CAGCTG 1 cut(s) 152
RsaI GTAC 2 cut(s) 29, 119
RsaNI GTAC 2 cut(s) 28, 118
RseI CAYNNNNRTG 1 cut(s) 213
SapI GCTCTTC 1 cut(s) 6
SaqAI TTAA 2 cut(s) 297, 327
SatI GCNGC 1 cut(s) 272
Sau3AI GATC 4 cut(s) 19, 41, 94, 244
SchI GAGTC 1 cut(s) 41
ScrFI CCNGG 2 cut(s) 122, 223
SetI ASST 5 cut(s) 67, 123, 154, 254, 333
SfaNI GCATC 1 cut(s) 189
SfcI CTRYAG 1 cut(s) 276
SmiMI CAYNNNNRTG 1 cut(s) 213
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
SseBI AGGCCT 1 cut(s) 164
SsiI CCGC 1 cut(s) 272
SspMI CTAG 2 cut(s) 194, 242
StuI AGGCCT 1 cut(s) 164
StyD4I CCNGG 2 cut(s) 120, 221
TauI GCSGC 1 cut(s) 274
TfiI GAWTC 2 cut(s) 88, 199
Tru1I TTAA 2 cut(s) 297, 327
Tru9I TTAA 2 cut(s) 297, 327
TscAI CASTG 1 cut(s) 191
TspDTI ATGAA 1 cut(s) 63
TspRI CASTG 1 cut(s) 191
Vha464I CTTAAG 1 cut(s) 326
XbaI TCTAGA 1 cut(s) 193
XspI CTAG 2 cut(s) 194, 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.