Prupe.4G046400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000181
Physical Location & Seq
Reverse (-)
2209524 .. 2212190
2667 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G046400.1

Sequence Viewer

Length: 1164 bp
ATGACATTAAGTAAGAAACGCCCTTTTTCATTCTCTCACAATCACCCTAAACCCAAACCGCCCGTCGTTTGTTTTCTCACAATCGCAAAGCCAAACACCAAAATCTACACAGCCATGGACATCGTCTCATCTTTGGAGTGCCTGAAATTCGATTCCCAATCGGAGTTCCTCTATAAGGACAGCGGCAGAAAGGACCTTTTCTCGCCAGCTATGGTCCCCATCAACTGCGAAACGTCAATAATCAGATTCAAGGCTGATGAATCTGAGCCTGAAGAATATGAGGATGAAGAATTTCTGTCTGATGAATCAGAGGCTAAAGAACTTATTGGGAGCACTTCTCTTGAATCAGAAGCTGATGAATCGGAGAGTGATGAATTGGAGCCTAGCAAACTTATTGGTCATGAATGTGAGTATTGTTTACAAGTGGGTGATCACTTTACCCAACTATGCCCTTACAAGTTTCATGTCCCAAAGAACGCAATTGTTAGCACTAGGTGTGTGATTCTTTGTAATCGTTGTGGTTGCCACTTTAGAAACACATGTTGTGCCAGTTGTGGCCGAAGAGATGGATGTGCAGTTATCATGGATTGTTTAAATTGTGGGAAGAAAGGTGAACACATGACTTATATGTGTCCGAACCGCAAGCGGAATTCTTTTCGCTCACACACAGTCGTGGACGACGGCGTTGTGTCTCCACTTTTGCAAATCCACCGGCCAAAGCCAATCAGGAGCAAGGCTGATGAATCGGAGACTGATGAATCGGAGACTGATGAATCGGAGACTGAAATACTTTTTGGTCATGAATGTGAGTATTGTTTAAAGGTGGGTGATCACTTTACGCAAATATGCCCTTACAAGTATCTAGTCCCAAAGAACGCAATTGTTAGCAGTAGGTGTGTTGTGCTTTGTAAATTTTGTGGTTGCCACTTTAGAGACTCATGTTGTGGCAGTTGTGGCCTAAGCTATGGATATGCAGTTATCGTGTATTGTTTACACTGTGGGACCAGAGGTGAACACATGACTTATATGTGTCCGATCCTCGAGGGGAAACCTTCTAATTTTTCTTGTGACCCTTATACTGGTTCTTGTTCTTTCAAAATAAGAGAATGGAGAGTTAAAGTTATTTTAAACATTAATGTGAATTACAATTTAACAAATAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

388

Amino Acids

43.76

Weight (kDa)

5.81

Isoelectric Point (pI)

50.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02310 FvH4_1g02340 FvH4_1g02340 FvH4_1g02340 FvH4_3g13110 FvH4_4g04530 FvH4_5g26960 FvH4_5g26990 FvH4_6g01091 FvH4_6g08071 FvH4_6g19630 FvH4_6g38111 FvH4_6g38112 FvH4_6g48801 FvH4_6g48810 FvH4_6g48861 FvH4_6g49020 FvH4_6g49040 FvH4_6g49040 FvH4_6g49060 FvH4_6g49070 FvH4_6g49070 FvH4_6g49870 FvH4_6g49880
malus_domestica MD05G1007300.v1.1 MD05G1007600.v1.1 MD08G1121900.v1.1 MD08G1122000.v1.1 MD08G1122200.v1.1 MD08G1122700.v1.1
prunus_persica Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G019700_v2.0.a1 Prupe.1G187100_v2.0.a1 Prupe.2G227700_v2.0.a1 Prupe.2G227800_v2.0.a1 Prupe.2G227900_v2.0.a1 Prupe.4G043000_v2.0.a1 Prupe.4G046400_v2.0.a1 Prupe.4G077400_v2.0.a1 Prupe.4G077500_v2.0.a1 Prupe.4G159200_v2.0.a1 Prupe.4G159300_v2.0.a1 Prupe.4G159500_v2.0.a1 Prupe.6G311400_v2.0.a1 Prupe.6G311400_v2.0.a1
pyrus_communis pycom05g00390 pycom07g27750 pycom08g10150 pycom08g10170
rosa_chinensis RchiOBHm_Chr1g0328161 RchiOBHm_Chr1g0372961 RchiOBHm_Chr2g0131001 RchiOBHm_Chr2g0151211 RchiOBHm_Chr2g0151231 RchiOBHm_Chr2g0151281 RchiOBHm_Chr2g0151321 RchiOBHm_Chr2g0170041 RchiOBHm_Chr3g0457761 RchiOBHm_Chr3g0457871 RchiOBHm_Chr5g0014841 RchiOBHm_Chr5g0021371 RchiOBHm_Chr5g0038581 RchiOBHm_Chr5g0038691 RchiOBHm_Chr5g0038761 RchiOBHm_Chr6g0246131 RchiOBHm_Chr6g0246181
rosa_laevigata RLG00000015270 RLG00000020541 RLG00000021919 RLG00000025188 RLG00000032146 RLG00000032147 RLG00000032607 RLG00000033860
rosa_multiflora Rmu_sc0001102.1_g000003 Rmu_sc0002298.1_g000007 Rmu_sc0002516.1_g000005 Rmu_sc0002516.1_g000013 Rmu_sc0003629.1_g000050 Rmu_sc0023055.1_g000001
rosa_roxburghii Rroxscaffold_1G00042380 Rroxscaffold_1G00042450 Rroxscaffold_1G00042460 Rroxscaffold_1G00042550 Rroxscaffold_1G00061700 Rroxscaffold_1G00061730 Rroxscaffold_1G00063310 Rroxscaffold_1G00065700 Rroxscaffold_2G00096530 Rroxscaffold_2G00096560 Rroxscaffold_2G00096590 Rroxscaffold_2G00096660 Rroxscaffold_2G00101110 Rroxscaffold_2G00113390 Rroxscaffold_5G00339030 Rroxscaffold_5G00351680 Rroxscaffold_6G00421510 Rroxscaffold_7G00168250 Rroxscaffold_7G00214760 Rroxscaffold_7G00214840
rosa_rugosa Rorug02G0294400 Rorug02G0545100 Rorug05G0008000 Rorug05G0066600 Rorug05G0173700 Rorug05G0173800 Rorug05G0290700 Rorug05G0290800 Rorug05G0290800 Rorug05G0519600 Rorug05G0519700
rosa_samantha Rh1CG087500 Rh1DG094400 Rh2AG570900 Rh2AG612800 Rh2BG354000 Rh2BG498100 Rh2BG498500 Rh2BG498600 Rh2BG628900 Rh2DG372100 Rh2DG509000 Rh2DG509300 Rh2DG509400 Rh2DG509600 Rh2DG640700 Rh3AG083900 Rh3BG086400 Rh3CG086700 Rh5AG102700 Rh5AG259700 Rh5AG261200 Rh5BG098700 Rh5BG098800 Rh5BG099500 Rh5BG113500 Rh5BG113900 Rh5BG155300 Rh5BG264600 Rh5CG111100 Rh5CG125200 Rh5CG169000 Rh5CG297600 Rh5DG098300 Rh5DG272900 Rh6AG033700 Rh6BG028900 Rh6CG029100 Rh6CG029200 Rh6DG028200 Rh6DG028300 Rh7CG429700
rosa_wichuraiana Rw0G009330 Rw0G012230 Rw0G018980 Rw1G008830 Rw2G035660 Rw2G039830 Rw2G040230 Rw2G040240 Rw5G013700 Rw5G024330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 1040
AciI CCGC 4 cut(s) 59, 183, 640, 646
AclWI GGATC 1 cut(s) 1030
AcoI YGGCCR 2 cut(s) 556, 713
AcsI RAATTY 4 cut(s) 146, 290, 649, 911
AcuI CTGAAG 1 cut(s) 291
AdeI CACNNNGTG 1 cut(s) 495
AfiI CCNNNNNNNGG 2 cut(s) 175, 1079
AflIII ACRYGT 1 cut(s) 539
AgsI TTSAA 3 cut(s) 250, 344, 1096
AjuI GAANNNNNNNTTGG 2 cut(s) 777, 809
AleI CACNNNNGTG 1 cut(s) 671
AluBI AGCT 3 cut(s) 209, 353, 963
AluI AGCT 3 cut(s) 209, 353, 963
Alw21I GWGCWC 1 cut(s) 335
Alw26I GTCTC 6 cut(s) 130, 696, 743, 758, 773, 927
AlwI GGATC 1 cut(s) 1030
AlwNI CAGNNNCTG 1 cut(s) 353
Ama87I CYCGRG 1 cut(s) 1040
AoxI GGCC 3 cut(s) 556, 713, 955
ApoI RAATTY 4 cut(s) 146, 290, 649, 911
ArsI GACNNNNNNTTYG 2 cut(s) 48, 80
AseI ATTAAT 1 cut(s) 1134
Asp700I GAANNNNTTC 1 cut(s) 291
AspS9I GGNCC 3 cut(s) 193, 214, 1002
AsuHPI GGTGA 5 cut(s) 35, 440, 623, 839, 1022
AvaI CYCGRG 1 cut(s) 1040
AvaII GGWCC 3 cut(s) 193, 214, 1002
Bbv12I GWGCWC 1 cut(s) 335
BccI CCATC 2 cut(s) 227, 560
BceAI ACGGC 1 cut(s) 697
BclI TGATCA 2 cut(s) 430, 829
BcoDI GTCTC 6 cut(s) 130, 696, 743, 758, 773, 927
BfaI CTAG 3 cut(s) 384, 492, 863
BisI GCNGC 1 cut(s) 184
BlsI GCNGC 1 cut(s) 185
Bme18I GGWCC 3 cut(s) 193, 214, 1002
BmeT110I CYCGRG 1 cut(s) 1040
BmgT120I GGNCC 3 cut(s) 193, 214, 1002
BmiI GGNNCC 3 cut(s) 216, 381, 1003
BplI GAGNNNNNCTC 2 cut(s) 322, 354
Bpu10I CCTNAGC 1 cut(s) 959
BsaJI CCNNGG 1 cut(s) 114
Bsc4I CCNNNNNNNGG 2 cut(s) 175, 1079
Bse118I RCCGGY 1 cut(s) 711
Bse1I ACTGG 2 cut(s) 549, 1084
BseDI CCNNGG 1 cut(s) 114
BseGI GGATG 2 cut(s) 289, 575
BseLI CCNNNNNNNGG 2 cut(s) 175, 1079
BseMII CTCAG 1 cut(s) 255
BseNI ACTGG 2 cut(s) 549, 1084
BsgI GTGCAG 1 cut(s) 594
BshFI GGCC 3 cut(s) 558, 715, 957
BsiHKAI GWGCWC 1 cut(s) 335
BsiHKCI CYCGRG 1 cut(s) 1040
BsiSI CCGG 1 cut(s) 712
BslFI GGGAC 4 cut(s) 200, 452, 851, 1015
BslI CCNNNNNNNGG 2 cut(s) 175, 1079
BsmAI GTCTC 6 cut(s) 130, 696, 743, 758, 773, 927
BsmBI CGTCTC 1 cut(s) 130
BsmFI GGGAC 4 cut(s) 200, 452, 851, 1015
BsnI GGCC 3 cut(s) 558, 715, 957
BsoBI CYCGRG 1 cut(s) 1040
Bsp1286I GDGCHC 1 cut(s) 335
Bsp143I GATC 3 cut(s) 430, 829, 1035
Bsp19I CCATGG 1 cut(s) 114
BspACI CCGC 4 cut(s) 59, 183, 640, 646
BspANI GGCC 3 cut(s) 558, 715, 957
BspCNI CTCAG 1 cut(s) 256
BspHI TCATGA 2 cut(s) 400, 799
BspLI GGNNCC 3 cut(s) 216, 381, 1003
BspPI GGATC 1 cut(s) 1030
BsrFI RCCGGY 1 cut(s) 711
BsrI ACTGG 2 cut(s) 549, 1084
BssAI RCCGGY 1 cut(s) 711
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 3 cut(s) 430, 829, 1035
BssT1I CCWWGG 1 cut(s) 114
Bst4CI ACNGT 2 cut(s) 670, 998
Bst6I CTCTTC 1 cut(s) 556
BstC8I GCNNGC 2 cut(s) 207, 644
BstDEI CTNAG 2 cut(s) 264, 959
BstDSI CCRYGG 1 cut(s) 114
BstENI CCTNNNNNAGG 1 cut(s) 173
BstF5I GGATG 2 cut(s) 289, 575
BstKTI GATC 3 cut(s) 433, 832, 1038
BstMAI GTCTC 6 cut(s) 130, 696, 743, 758, 773, 927
BstMBI GATC 3 cut(s) 430, 829, 1035
BstMWI GCNNNNNNNGC 1 cut(s) 954
BstNSI RCATGY 1 cut(s) 543
BsuRI GGCC 3 cut(s) 558, 715, 957
BtgI CCRYGG 1 cut(s) 114
BtsCI GGATG 2 cut(s) 289, 575
BtsIMutI CAGTG 1 cut(s) 994
Cac8I GCNNGC 2 cut(s) 207, 644
CaiI CAGNNNCTG 1 cut(s) 353
CciI TCATGA 2 cut(s) 400, 799
Cfr10I RCCGGY 1 cut(s) 711
Cfr13I GGNCC 3 cut(s) 193, 214, 1002
CviAII CATG 9 cut(s) 115, 401, 464, 540, 583, 619, 800, 939, 1018
DdeI CTNAG 2 cut(s) 264, 959
DpnI GATC 3 cut(s) 432, 831, 1037
DpnII GATC 3 cut(s) 430, 829, 1035
DraI TTTAAA 3 cut(s) 594, 819, 1128
DraIII CACNNNGTG 1 cut(s) 495
EaeI YGGCCR 2 cut(s) 556, 713
Eam1104I CTCTTC 1 cut(s) 556
EarI CTCTTC 1 cut(s) 556
Eco130I CCWWGG 1 cut(s) 114
Eco47I GGWCC 3 cut(s) 193, 214, 1002
Eco57I CTGAAG 1 cut(s) 291
Eco88I CYCGRG 1 cut(s) 1040
EcoNI CCTNNNNNAGG 1 cut(s) 173
EcoO109I RGGNCCY 1 cut(s) 193
EcoRI GAATTC 1 cut(s) 649
EcoT14I CCWWGG 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 114
Esp3I CGTCTC 1 cut(s) 130
FaeI CATG 9 cut(s) 118, 404, 467, 543, 586, 622, 803, 942, 1021
FaqI GGGAC 4 cut(s) 200, 452, 851, 1015
FatI CATG 9 cut(s) 114, 400, 463, 539, 582, 618, 799, 938, 1017
FbaI TGATCA 2 cut(s) 430, 829
Fnu4HI GCNGC 1 cut(s) 184
FokI GGATG 2 cut(s) 296, 582
Fsp4HI GCNGC 1 cut(s) 184
FspBI CTAG 3 cut(s) 384, 492, 863
GluI GCNGC 1 cut(s) 184
HaeIII GGCC 3 cut(s) 558, 715, 957
HapII CCGG 1 cut(s) 712
Hin1II CATG 9 cut(s) 118, 404, 467, 543, 586, 622, 803, 942, 1021
HpaII CCGG 1 cut(s) 712
HphI GGTGA 5 cut(s) 35, 440, 623, 839, 1022
Hpy166II GTNNAC 5 cut(s) 419, 614, 676, 992, 1013
Hpy188III TCNNGA 4 cut(s) 341, 401, 727, 800
Hpy8I GTNNAC 5 cut(s) 419, 614, 676, 992, 1013
Hpy99I CGWCG 2 cut(s) 68, 683
HpyAV CCTTC 1 cut(s) 1062
HpyCH4III ACNGT 2 cut(s) 670, 998
HpyCH4IV ACGT 1 cut(s) 233
HpyCH4V TGCA 3 cut(s) 575, 703, 974
HpyF10VI GCNNNNNNNGC 1 cut(s) 954
HpyF3I CTNAG 2 cut(s) 264, 959
HpySE526I ACGT 1 cut(s) 233
Hsp92II CATG 9 cut(s) 118, 404, 467, 543, 586, 622, 803, 942, 1021
Ksp22I TGATCA 2 cut(s) 430, 829
Kzo9I GATC 3 cut(s) 430, 829, 1035
LmnI GCTCC 3 cut(s) 330, 379, 729
LpnPI CCDG 8 cut(s) 155, 219, 282, 562, 712, 725, 1018, 1065
MaeI CTAG 3 cut(s) 384, 492, 863
MaeII ACGT 1 cut(s) 233
MaeIII GTNAC 1 cut(s) 1067
MalI GATC 3 cut(s) 432, 831, 1037
MboI GATC 3 cut(s) 430, 829, 1035
MboII GAAGA 4 cut(s) 284, 299, 573, 616
MfeI CAATTG 2 cut(s) 480, 879
MhlI GDGCHC 1 cut(s) 335
MlyI GAGTC 1 cut(s) 929
MnlI CCTC 6 cut(s) 179, 274, 304, 1001, 1036, 1049
MroXI GAANNNNTTC 1 cut(s) 291
MseI TTAA 7 cut(s) 8, 593, 818, 1116, 1127, 1134, 1151
MslI CAYNNNNRTG 5 cut(s) 113, 405, 671, 804, 1136
MspA1I CMGCKG 1 cut(s) 183
MspI CCGG 1 cut(s) 712
MunI CAATTG 2 cut(s) 480, 879
MwoI GCNNNNNNNGC 1 cut(s) 954
NcoI CCATGG 1 cut(s) 114
NdeII GATC 3 cut(s) 430, 829, 1035
NlaIII CATG 9 cut(s) 118, 404, 467, 543, 586, 622, 803, 942, 1021
NlaIV GGNNCC 3 cut(s) 216, 381, 1003
NmuCI GTSAC 1 cut(s) 1067
NspI RCATGY 1 cut(s) 543
OliI CACNNNNGTG 1 cut(s) 671
PaeR7I CTCGAG 1 cut(s) 1040
PagI TCATGA 2 cut(s) 400, 799
PciI ACATGT 1 cut(s) 539
PdmI GAANNNNTTC 1 cut(s) 291
PflFI GACNNNGTC 1 cut(s) 122
PkrI GCNGC 1 cut(s) 185
PleI GAGTC 1 cut(s) 929
PpsI GAGTC 1 cut(s) 929
PpuMI RGGWCCY 1 cut(s) 193
PscI ACATGT 1 cut(s) 539
PshBI ATTAAT 1 cut(s) 1134
Psp5II RGGWCCY 1 cut(s) 193
PspN4I GGNNCC 3 cut(s) 216, 381, 1003
PspPI GGNCC 3 cut(s) 193, 214, 1002
PspPPI RGGWCCY 1 cut(s) 193
PspXI VCTCGAGB 1 cut(s) 1040
PstNI CAGNNNCTG 1 cut(s) 353
PsyI GACNNNGTC 1 cut(s) 122
RseI CAYNNNNRTG 5 cut(s) 113, 405, 671, 804, 1136
SaqAI TTAA 7 cut(s) 8, 593, 818, 1116, 1127, 1134, 1151
SatI GCNGC 1 cut(s) 184
Sau3AI GATC 3 cut(s) 430, 829, 1035
Sau96I GGNCC 3 cut(s) 193, 214, 1002
SchI GAGTC 1 cut(s) 929
SduI GDGCHC 1 cut(s) 335
Sfr274I CTCGAG 1 cut(s) 1040
SinI GGWCC 3 cut(s) 193, 214, 1002
SlaI CTCGAG 1 cut(s) 1040
SmiMI CAYNNNNRTG 5 cut(s) 113, 405, 671, 804, 1136
SmlI CTYRAG 1 cut(s) 1040
SmoI CTYRAG 1 cut(s) 1040
SsiI CCGC 4 cut(s) 59, 183, 640, 646
SspMI CTAG 3 cut(s) 384, 492, 863
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 2 cut(s) 670, 998
TaiI ACGT 1 cut(s) 236
TaqI TCGA 2 cut(s) 150, 1041
TauI GCSGC 1 cut(s) 186
Tru1I TTAA 7 cut(s) 8, 593, 818, 1116, 1127, 1134, 1151
Tru9I TTAA 7 cut(s) 8, 593, 818, 1116, 1127, 1134, 1151
TscAI CASTG 1 cut(s) 1001
TseFI GTSAC 1 cut(s) 1067
Tsp45I GTSAC 1 cut(s) 1067
TspRI CASTG 1 cut(s) 1001
Tth111I GACNNNGTC 1 cut(s) 122
VpaK11BI GGWCC 3 cut(s) 193, 214, 1002
VspI ATTAAT 1 cut(s) 1134
XagI CCTNNNNNAGG 1 cut(s) 173
XapI RAATTY 4 cut(s) 146, 290, 649, 911
XceI RCATGY 1 cut(s) 543
XhoI CTCGAG 1 cut(s) 1040
XmnI GAANNNNTTC 1 cut(s) 291
XspI CTAG 3 cut(s) 384, 492, 863
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.